HEADER TRANSFERASE 18-FEB-25 9IFV TITLE PARP15 CATALYTIC DOMAIN MUTANT (R576E) IN COMPLEX WITH 3- TITLE 2 AMINOBENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP15; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 7,ARTD7,B- COMPND 5 AGGRESSIVE LYMPHOMA PROTEIN 3,POLY [ADP-RIBOSE] POLYMERASE 15,PARP- COMPND 6 15; COMPND 7 EC: 2.4.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: N-TERMINAL HIS-TAG AND TEV CLEAVAGE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP15, BAL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ADP-RIBOSYLTRANSFERASE, PARP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.EBENWALDNER,D.T.LOGAN,H.SCHULER,M.MOCHE REVDAT 2 12-NOV-25 9IFV 1 JRNL REVDAT 1 08-OCT-25 9IFV 0 JRNL AUTH C.EBENWALDNER,A.G.GARCIA SAURA,S.EKSTROM,K.BERNFUR,M.MOCHE, JRNL AUTH 2 D.T.LOGAN,M.S.COHEN,H.SCHULER JRNL TITL REGULATION OF ADP-RIBOSYLTRANSFERASE ACTIVITY BY ART DOMAIN JRNL TITL 2 DIMERIZATION IN PARP15. JRNL REF NAT COMMUN V. 16 9567 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41162413 JRNL DOI 10.1038/S41467-025-65315-9 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21RC1_5084 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 68447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8600 - 4.1300 1.00 3507 173 0.1677 0.1694 REMARK 3 2 4.1300 - 3.2800 0.88 2997 125 0.1755 0.1877 REMARK 3 3 3.2800 - 2.8600 1.00 3367 160 0.2024 0.2536 REMARK 3 4 2.8600 - 2.6000 0.91 3034 167 0.1956 0.2347 REMARK 3 5 2.6000 - 2.4100 1.00 3295 205 0.1925 0.2320 REMARK 3 6 2.4100 - 2.2700 1.00 3343 148 0.1940 0.2014 REMARK 3 7 2.2700 - 2.1600 0.95 3090 193 0.1933 0.2642 REMARK 3 8 2.1600 - 2.0600 0.94 3097 168 0.2111 0.2735 REMARK 3 9 2.0600 - 1.9800 1.00 3336 142 0.2233 0.2230 REMARK 3 10 1.9800 - 1.9200 0.96 3117 156 0.2205 0.2793 REMARK 3 11 1.9200 - 1.8600 0.95 3068 165 0.2234 0.2390 REMARK 3 12 1.8600 - 1.8000 1.00 3298 178 0.2255 0.2592 REMARK 3 13 1.8000 - 1.7600 1.00 3331 142 0.2305 0.2561 REMARK 3 14 1.7600 - 1.7100 0.98 3197 194 0.2420 0.2840 REMARK 3 15 1.7100 - 1.6700 1.00 3263 193 0.2644 0.3170 REMARK 3 16 1.6700 - 1.6400 0.98 3208 173 0.2812 0.3030 REMARK 3 17 1.6400 - 1.6100 0.91 3007 153 0.2449 0.2901 REMARK 3 18 1.6100 - 1.5800 0.81 2626 142 0.2451 0.2713 REMARK 3 19 1.5800 - 1.5500 0.70 2262 137 0.2511 0.3010 REMARK 3 20 1.5500 - 1.5200 0.61 2002 100 0.2727 0.3088 REMARK 3 21 1.5200 - 1.5000 0.53 1697 81 0.2690 0.2999 REMARK 3 22 1.5000 - 1.4700 0.39 1306 61 0.3001 0.2781 REMARK 3 23 1.4700 - 1.4500 0.17 540 35 0.3489 0.4468 REMARK 3 24 1.4500 - 1.4310 0.02 62 6 0.2681 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.199 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.481 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3365 REMARK 3 ANGLE : 1.170 4571 REMARK 3 CHIRALITY : 0.087 475 REMARK 3 PLANARITY : 0.021 610 REMARK 3 DIHEDRAL : 13.927 1259 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9IFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1292145398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.431 REMARK 200 RESOLUTION RANGE LOW (A) : 77.781 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 1.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES PH 7.5, 0.02 M MGCL2, 1 REMARK 280 MM SPERMINE-HCL, 5% (W/V) PEG (8K), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.78100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.78100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.85650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.34850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.85650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.34850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.78100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.85650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.34850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.78100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.85650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.34850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.71300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.78100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -155.56200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 SER A 465 REMARK 465 SER A 466 REMARK 465 GLY A 467 REMARK 465 VAL A 468 REMARK 465 ASP A 469 REMARK 465 LEU A 470 REMARK 465 GLY A 471 REMARK 465 THR A 472 REMARK 465 GLU A 473 REMARK 465 ASN A 474 REMARK 465 LEU A 475 REMARK 465 TYR A 476 REMARK 465 PHE A 477 REMARK 465 GLN A 478 REMARK 465 SER A 479 REMARK 465 MET A 480 REMARK 465 MET B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 465 HIS B 464 REMARK 465 SER B 465 REMARK 465 SER B 466 REMARK 465 GLY B 467 REMARK 465 VAL B 468 REMARK 465 ASP B 469 REMARK 465 LEU B 470 REMARK 465 GLY B 471 REMARK 465 THR B 472 REMARK 465 GLU B 473 REMARK 465 ASN B 474 REMARK 465 LEU B 475 REMARK 465 TYR B 476 REMARK 465 PHE B 477 REMARK 465 GLN B 478 REMARK 465 SER B 479 REMARK 465 MET B 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 481 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 500 O HOH A 801 1.70 REMARK 500 O HOH A 801 O HOH A 836 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 912 O HOH B 912 4554 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 495 CB CYS A 495 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 491 -0.78 71.49 REMARK 500 ASN A 552 49.16 -107.72 REMARK 500 TYR A 604 -69.05 -102.99 REMARK 500 HIS B 491 20.00 57.21 REMARK 500 ASN B 552 51.30 -110.45 REMARK 500 TYR B 604 -61.88 -102.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 655 0.18 SIDE CHAIN REMARK 500 ARG B 515 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9IFV A 481 678 UNP Q460N3 PAR15_HUMAN 481 678 DBREF 9IFV B 481 678 UNP Q460N3 PAR15_HUMAN 481 678 SEQADV 9IFV MET A 458 UNP Q460N3 INITIATING METHIONINE SEQADV 9IFV HIS A 459 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS A 460 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS A 461 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS A 462 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS A 463 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS A 464 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER A 465 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER A 466 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLY A 467 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV VAL A 468 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV ASP A 469 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV LEU A 470 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLY A 471 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV THR A 472 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLU A 473 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV ASN A 474 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV LEU A 475 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV TYR A 476 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV PHE A 477 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLN A 478 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER A 479 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV MET A 480 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLU A 576 UNP Q460N3 ARG 576 ENGINEERED MUTATION SEQADV 9IFV MET B 458 UNP Q460N3 INITIATING METHIONINE SEQADV 9IFV HIS B 459 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS B 460 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS B 461 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS B 462 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS B 463 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV HIS B 464 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER B 465 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER B 466 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLY B 467 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV VAL B 468 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV ASP B 469 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV LEU B 470 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLY B 471 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV THR B 472 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLU B 473 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV ASN B 474 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV LEU B 475 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV TYR B 476 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV PHE B 477 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLN B 478 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV SER B 479 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV MET B 480 UNP Q460N3 EXPRESSION TAG SEQADV 9IFV GLU B 576 UNP Q460N3 ARG 576 ENGINEERED MUTATION SEQRES 1 A 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 A 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 A 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 A 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 A 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 A 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 A 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 A 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 A 221 ASN GLU SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 A 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 A 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 A 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 A 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 A 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 A 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 A 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA SEQRES 1 B 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 B 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 B 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 B 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 B 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 B 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 B 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 B 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 B 221 ASN GLU SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 B 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 B 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 B 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 B 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 B 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 B 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 B 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA HET 3AB A 701 18 HET 3AB B 701 18 HETNAM 3AB 3-AMINOBENZAMIDE FORMUL 3 3AB 2(C7 H8 N2 O) FORMUL 5 HOH *217(H2 O) HELIX 1 AA1 GLN A 503 SER A 518 1 16 HELIX 2 AA2 ALA A 531 ASP A 549 1 19 HELIX 3 AA3 ASP A 562 ASP A 564 5 3 HELIX 4 AA4 SER A 565 GLY A 573 1 9 HELIX 5 AA5 ASN A 575 GLY A 580 1 6 HELIX 6 AA6 ASP A 595 ALA A 600 1 6 HELIX 7 AA7 GLN B 503 SER B 518 1 16 HELIX 8 AA8 ALA B 531 ASP B 549 1 19 HELIX 9 AA9 ASP B 562 ASP B 564 5 3 HELIX 10 AB1 SER B 565 GLY B 573 1 9 HELIX 11 AB2 ASN B 575 GLY B 580 1 6 HELIX 12 AB3 ASP B 595 ALA B 600 1 6 SHEET 1 AA1 5 PHE A 494 GLN A 498 0 SHEET 2 AA1 5 ALA A 521 ASN A 530 -1 O ARG A 527 N VAL A 497 SHEET 3 AA1 5 ALA A 668 THR A 677 -1 O GLU A 671 N ILE A 528 SHEET 4 AA1 5 ARG A 612 LEU A 621 -1 N MET A 615 O ILE A 674 SHEET 5 AA1 5 GLU A 554 THR A 561 -1 N ARG A 555 O VAL A 620 SHEET 1 AA2 4 THR A 590 ALA A 593 0 SHEET 2 AA2 4 LEU A 659 VAL A 662 -1 O PHE A 660 N PHE A 592 SHEET 3 AA2 4 SER A 649 THR A 651 -1 N VAL A 650 O VAL A 661 SHEET 4 AA2 4 PHE A 625 LYS A 627 1 N THR A 626 O THR A 651 SHEET 1 AA3 5 PHE B 494 GLN B 498 0 SHEET 2 AA3 5 ALA B 521 ASN B 530 -1 O ARG B 527 N VAL B 497 SHEET 3 AA3 5 ALA B 668 THR B 677 -1 O THR B 675 N LYS B 524 SHEET 4 AA3 5 LYS B 613 LEU B 621 -1 N MET B 615 O ILE B 674 SHEET 5 AA3 5 GLU B 554 THR B 561 -1 N LEU B 557 O VAL B 618 SHEET 1 AA4 4 THR B 590 ALA B 593 0 SHEET 2 AA4 4 LEU B 659 VAL B 662 -1 O PHE B 660 N PHE B 592 SHEET 3 AA4 4 SER B 649 THR B 651 -1 N VAL B 650 O VAL B 661 SHEET 4 AA4 4 PHE B 625 LYS B 627 1 N THR B 626 O THR B 651 SHEET 1 AA5 2 PRO B 637 ASN B 639 0 SHEET 2 AA5 2 ASN B 642 LEU B 646 -1 O ASP B 645 N LYS B 638 CRYST1 75.713 76.697 155.562 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006428 0.00000 CONECT 6382 6383 6392 6393 CONECT 6383 6382 6384 6385 CONECT 6384 6383 6388 6394 CONECT 6385 6383 6386 6395 CONECT 6386 6385 6387 6396 CONECT 6387 6386 6388 6397 CONECT 6388 6384 6387 6389 CONECT 6389 6388 6390 6391 CONECT 6390 6389 CONECT 6391 6389 6398 6399 CONECT 6392 6382 CONECT 6393 6382 CONECT 6394 6384 CONECT 6395 6385 CONECT 6396 6386 CONECT 6397 6387 CONECT 6398 6391 CONECT 6399 6391 CONECT 6400 6401 6410 6411 CONECT 6401 6400 6402 6403 CONECT 6402 6401 6406 6412 CONECT 6403 6401 6404 6413 CONECT 6404 6403 6405 6414 CONECT 6405 6404 6406 6415 CONECT 6406 6402 6405 6407 CONECT 6407 6406 6408 6409 CONECT 6408 6407 CONECT 6409 6407 6416 6417 CONECT 6410 6400 CONECT 6411 6400 CONECT 6412 6402 CONECT 6413 6403 CONECT 6414 6404 CONECT 6415 6405 CONECT 6416 6409 CONECT 6417 6409 MASTER 399 0 2 12 20 0 0 6 3438 2 36 34 END