HEADER DNA BINDING PROTEIN 30-JUN-24 9ILK TITLE MONOMERIC SARA, TRUNCATION OF RESIDUE 20-124 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR SARA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STAPHYLOCOCCAL ACCESSORY REGULATOR A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TRUNCATION OF RESIDUES 20-124 OF SARA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS N315; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 GENE: SARA, SA0573; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS S.AUREUS, DNA-BINDING, WINGED-HELIX, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.XIA,D.H.FU REVDAT 1 15-OCT-25 9ILK 0 JRNL AUTH B.XIA,D.H.FU JRNL TITL SOLUTION STRUCTURE OF THE MONOMERIC DNA-BINDING DOMAIN OF JRNL TITL 2 SARA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ILK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300048939. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 50 MM REMARK 210 NACL, 90 % H2O, 10 % [U-99% 2H] REMARK 210 D2O, 0.01 % DSS, 0.01 % SODIUM REMARK 210 AZIDE, 5 % EDTA-FREE PROTEASE REMARK 210 INHIBITOR COCKTAIL, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D CCH-COSY; 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, AMBER, DYANA, TALOS-N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 6 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 ARG A 83 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 16 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 18 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 18 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A 83 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 20 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 17.33 57.70 REMARK 500 1 LYS A 29 110.39 -35.93 REMARK 500 2 ASP A 60 17.15 59.52 REMARK 500 4 ASN A 28 31.09 -95.90 REMARK 500 4 LYS A 29 119.96 -39.04 REMARK 500 5 SER A 13 17.75 59.53 REMARK 500 5 LYS A 29 108.99 -35.94 REMARK 500 5 HIS A 109 0.60 -66.43 REMARK 500 5 HIS A 110 -5.58 -58.54 REMARK 500 6 LYS A 29 113.21 -32.67 REMARK 500 6 ASP A 60 11.40 56.06 REMARK 500 7 ASN A 28 31.28 -93.05 REMARK 500 7 LYS A 29 113.72 -36.39 REMARK 500 8 ASN A 28 31.55 -89.56 REMARK 500 8 LYS A 29 115.51 -32.87 REMARK 500 8 ASP A 60 19.33 59.11 REMARK 500 10 LYS A 29 109.75 -40.71 REMARK 500 10 ASP A 60 13.03 56.16 REMARK 500 11 LYS A 29 119.03 -37.85 REMARK 500 12 LYS A 29 107.93 -37.22 REMARK 500 13 LYS A 29 112.02 -39.73 REMARK 500 13 HIS A 109 35.54 -98.99 REMARK 500 14 SER A 13 17.21 59.48 REMARK 500 14 LYS A 29 110.70 -39.68 REMARK 500 15 ASN A 28 31.27 -97.85 REMARK 500 15 LYS A 29 114.16 -33.88 REMARK 500 17 ASN A 28 31.08 -95.68 REMARK 500 17 LYS A 29 108.47 -31.58 REMARK 500 17 ASP A 60 19.96 59.30 REMARK 500 18 ASN A 28 31.62 -92.15 REMARK 500 18 LYS A 29 112.77 -36.56 REMARK 500 19 ASP A 60 10.60 55.89 REMARK 500 20 LYS A 29 116.33 -35.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 83 0.09 SIDE CHAIN REMARK 500 11 ARG A 96 0.08 SIDE CHAIN REMARK 500 19 TYR A 24 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36678 RELATED DB: BMRB REMARK 900 MONOMERIC SARA, TRUNCATION OF RESIDUE 20-124 DBREF 9ILK A 2 106 UNP Q7A732 SARA_STAAN 20 124 SEQADV 9ILK MET A 1 UNP Q7A732 INITIATING METHIONINE SEQADV 9ILK LEU A 107 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK GLU A 108 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 109 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 110 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 111 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 112 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 113 UNP Q7A732 EXPRESSION TAG SEQADV 9ILK HIS A 114 UNP Q7A732 EXPRESSION TAG SEQRES 1 A 114 MET ASP LYS LEU LYS SER LEU ILE LYS LYS GLU PHE SER SEQRES 2 A 114 ILE SER PHE GLU GLU PHE ALA VAL LEU THR TYR ILE SER SEQRES 3 A 114 GLU ASN LYS GLU LYS GLU TYR TYR LEU LYS ASP ILE ILE SEQRES 4 A 114 ASN HIS LEU ASN TYR LYS GLN PRO GLN VAL VAL LYS ALA SEQRES 5 A 114 VAL LYS ILE LEU SER GLN GLU ASP TYR PHE ASP LYS LYS SEQRES 6 A 114 ARG ASN GLU HIS ASP GLU ARG THR VAL LEU ILE LEU VAL SEQRES 7 A 114 ASN ALA GLN GLN ARG LYS LYS ILE GLU SER LEU LEU SER SEQRES 8 A 114 ARG VAL ASN LYS ARG ILE THR GLU ALA ASN ASN GLU ILE SEQRES 9 A 114 GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASP A 2 SER A 13 1 12 HELIX 2 AA2 SER A 15 ASN A 28 1 14 HELIX 3 AA3 LEU A 35 LEU A 42 1 8 HELIX 4 AA4 LYS A 45 GLU A 59 1 15 HELIX 5 AA5 ASN A 79 HIS A 109 1 31 SHEET 1 AA1 3 GLU A 32 TYR A 34 0 SHEET 2 AA1 3 VAL A 74 LEU A 77 -1 O ILE A 76 N TYR A 33 SHEET 3 AA1 3 ASP A 63 ARG A 66 -1 N LYS A 65 O LEU A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 185 0 0 5 3 0 0 6 973 1 0 9 END