HEADER LIPID BINDING PROTEIN 08-JUL-24 9INK TITLE CRYSTAL STRUCTURE OF BETA-CAROTENE-BINDING PROTEIN (BBP) FROM TITLE 2 SCHISTOCERCA GREGARIA COMPLEXED WITH BETA-CAROTENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YELLOW PROTEIN OF THE TAKEOUT FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TUBULAR LIPID-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOCERCA GREGARIA; SOURCE 3 ORGANISM_TAXID: 7010; SOURCE 4 GENE: YPT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS COMPLEX WITH BETA-CAROTENE, CAROTENOPROTEIN, TAKEOUT-1 DOMAIN, KEYWDS 2 TUBULAR LIPID-BINDING PROTEIN (TULIPS), CAROTENOID SOLUBILIZER, KEYWDS 3 DIMER, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,L.A.VARFOLOMEEVA,N.A.EGORKIN,V.O.POPOV,N.N.SLUCHANKO REVDAT 3 18-DEC-24 9INK 1 JRNL REVDAT 2 13-NOV-24 9INK 1 REMARK REVDAT 1 18-SEP-24 9INK 0 JRNL AUTH N.A.EGORKIN,E.E.DOMINNIK,R.I.RAEVSKII,D.D.KUKLINA, JRNL AUTH 2 L.A.VARFOLOMEEVA,V.O.POPOV,K.M.BOYKO,N.N.SLUCHANKO JRNL TITL STRUCTURAL BASIS OF SELECTIVE BETA-CAROTENE BINDING BY A JRNL TITL 2 SOLUBLE PROTEIN. JRNL REF STRUCTURE V. 32 2123 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39383875 JRNL DOI 10.1016/J.STR.2024.09.014 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.388 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.448 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 56.162 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3339 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3202 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4580 ; 2.313 ; 1.786 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7386 ; 1.062 ; 1.703 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 8.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;17.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;19.740 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3973 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1762 ; 4.172 ; 3.588 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1762 ; 4.169 ; 3.589 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2199 ; 6.332 ; 6.488 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2200 ; 6.332 ; 6.488 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1577 ; 4.452 ; 3.845 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1578 ; 4.451 ; 3.845 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2382 ; 6.897 ; 6.988 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7429 ; 9.470 ;52.440 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7430 ; 9.470 ;52.440 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2523 29.0741 18.6524 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.1538 REMARK 3 T33: 0.0204 T12: -0.0791 REMARK 3 T13: -0.0382 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.5703 L22: 2.9792 REMARK 3 L33: 0.8352 L12: -0.3378 REMARK 3 L13: 0.1348 L23: -1.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.1543 S12: 0.0698 S13: 0.0075 REMARK 3 S21: 0.0088 S22: -0.2486 S23: -0.1709 REMARK 3 S31: -0.1786 S32: 0.0743 S33: 0.0943 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9392 -30.4526 41.4534 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.1755 REMARK 3 T33: 0.0173 T12: -0.0680 REMARK 3 T13: -0.0097 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.0568 L22: 1.5420 REMARK 3 L33: 1.9013 L12: 0.4741 REMARK 3 L13: -0.5438 L23: -1.1522 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.2041 S13: -0.0875 REMARK 3 S21: -0.0801 S22: -0.0196 S23: -0.0495 REMARK 3 S31: 0.1061 S32: 0.1731 S33: 0.0795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9INK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17UM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.41100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 2.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM ACETATE, PH 4.0, 0.2 M REMARK 280 POTASSIUM CHLORIDE, 20% PEG 6000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 112.11000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.69500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.75500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.11000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.69500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.75500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 THR A 246 REMARK 465 PRO A 247 REMARK 465 ALA A 248 REMARK 465 ALA A 249 REMARK 465 VAL A 250 REMARK 465 GLY A 251 REMARK 465 LEU A 252 REMARK 465 TYR A 253 REMARK 465 ARG A 254 REMARK 465 ALA A 255 REMARK 465 VAL A 256 REMARK 465 PRO A 257 REMARK 465 GLY A 258 REMARK 465 LEU A 259 REMARK 465 HIS A 260 REMARK 465 THR A 261 REMARK 465 LEU A 262 REMARK 465 PRO A 263 REMARK 465 LEU A 264 REMARK 465 PRO A 265 REMARK 465 LEU A 266 REMARK 465 SER A 267 REMARK 465 ALA A 268 REMARK 465 PHE A 269 REMARK 465 ALA A 270 REMARK 465 TYR A 271 REMARK 465 HIS A 272 REMARK 465 LYS A 273 REMARK 465 GLY B 19 REMARK 465 PRO B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 465 GLY B 23 REMARK 465 VAL B 24 REMARK 465 GLN B 25 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 ALA B 248 REMARK 465 ALA B 249 REMARK 465 VAL B 250 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 TYR B 253 REMARK 465 ARG B 254 REMARK 465 ALA B 255 REMARK 465 VAL B 256 REMARK 465 PRO B 257 REMARK 465 GLY B 258 REMARK 465 LEU B 259 REMARK 465 HIS B 260 REMARK 465 THR B 261 REMARK 465 LEU B 262 REMARK 465 PRO B 263 REMARK 465 LEU B 264 REMARK 465 PRO B 265 REMARK 465 LEU B 266 REMARK 465 SER B 267 REMARK 465 ALA B 268 REMARK 465 PHE B 269 REMARK 465 ALA B 270 REMARK 465 TYR B 271 REMARK 465 HIS B 272 REMARK 465 LYS B 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU A 168 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 THR A 181 CA - CB - OG1 ANGL. DEV. = -20.1 DEGREES REMARK 500 LEU A 194 CB - CG - CD1 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLN B 163 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 245 CG - CD - NE ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG B 245 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 55.27 -119.07 REMARK 500 PHE A 77 85.69 -163.02 REMARK 500 ASN A 145 64.32 39.39 REMARK 500 PHE A 188 62.00 37.59 REMARK 500 ASN B 145 63.36 34.67 REMARK 500 PHE B 188 60.40 34.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 161 GLY B 162 143.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 65 0.11 SIDE CHAIN REMARK 500 ARG A 167 0.12 SIDE CHAIN REMARK 500 ARG A 228 0.08 SIDE CHAIN REMARK 500 ARG B 167 0.13 SIDE CHAIN REMARK 500 ARG B 245 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 9INK A 23 273 UNP A0A6N3ISN1_SCHGR DBREF2 9INK A A0A6N3ISN1 23 273 DBREF1 9INK B 23 273 UNP A0A6N3ISN1_SCHGR DBREF2 9INK B A0A6N3ISN1 23 273 SEQADV 9INK GLY A 19 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK PRO A 20 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK HIS A 21 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK MET A 22 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK GLY B 19 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK PRO B 20 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK HIS B 21 UNP A0A6N3ISN EXPRESSION TAG SEQADV 9INK MET B 22 UNP A0A6N3ISN EXPRESSION TAG SEQRES 1 A 255 GLY PRO HIS MET GLY VAL GLN THR CYS ASN ALA SER SER SEQRES 2 A 255 PRO ASP PHE GLN LEU CYS VAL ARG ALA SER LEU GLN GLN SEQRES 3 A 255 LEU ILE PRO GLU LEU ALA SER GLY VAL PRO SER ILE GLY SEQRES 4 A 255 ALA GLU GLY VAL ASP PRO LEU ARG GLY LEU PRO PRO ILE SEQRES 5 A 255 VAL HIS ASN SER ASN GLY PHE LYS VAL GLN LEU ASP ASP SEQRES 6 A 255 VAL SER ILE SER GLY LEU SER ALA THR LEU ILE ASN ASP SEQRES 7 A 255 VAL ASN VAL ASP LEU THR SER ASN THR ILE ARG ILE GLN SEQRES 8 A 255 ALA THR VAL PRO GLY TYR ILE THR ALA THR GLY ILE GLN SEQRES 9 A 255 THR THR ASP ALA GLU ILE MET GLY ILE PRO LEU LYS GLY SEQRES 10 A 255 SER GLY PRO PHE THR ILE SER LEU ALA ASN PRO SER LEU SEQRES 11 A 255 ALA VAL THR LEU THR GLY ALA PRO SER ALA GLY PRO ASN SEQRES 12 A 255 GLY GLN THR TYR LEU ARG LEU THR SER ALA SER ALA ALA SEQRES 13 A 255 ILE GLU PRO GLY THR PRO THR ALA ASP ILE LYS GLY PHE SEQRES 14 A 255 PHE PRO GLN PHE PRO PRO LEU GLU ALA ALA ALA SER ALA SEQRES 15 A 255 PHE ALA SER VAL VAL ALA PRO ASP VAL VAL GLN SER LEU SEQRES 16 A 255 LYS PRO THR LEU ASP LYS TRP LEU GLY GLY VAL ALA LEU SEQRES 17 A 255 GLN ARG ALA GLN ALA VAL PHE SER SER VAL SER TYR ASP SEQRES 18 A 255 ALA LEU PHE PRO GLY ARG THR PRO ALA ALA VAL GLY LEU SEQRES 19 A 255 TYR ARG ALA VAL PRO GLY LEU HIS THR LEU PRO LEU PRO SEQRES 20 A 255 LEU SER ALA PHE ALA TYR HIS LYS SEQRES 1 B 255 GLY PRO HIS MET GLY VAL GLN THR CYS ASN ALA SER SER SEQRES 2 B 255 PRO ASP PHE GLN LEU CYS VAL ARG ALA SER LEU GLN GLN SEQRES 3 B 255 LEU ILE PRO GLU LEU ALA SER GLY VAL PRO SER ILE GLY SEQRES 4 B 255 ALA GLU GLY VAL ASP PRO LEU ARG GLY LEU PRO PRO ILE SEQRES 5 B 255 VAL HIS ASN SER ASN GLY PHE LYS VAL GLN LEU ASP ASP SEQRES 6 B 255 VAL SER ILE SER GLY LEU SER ALA THR LEU ILE ASN ASP SEQRES 7 B 255 VAL ASN VAL ASP LEU THR SER ASN THR ILE ARG ILE GLN SEQRES 8 B 255 ALA THR VAL PRO GLY TYR ILE THR ALA THR GLY ILE GLN SEQRES 9 B 255 THR THR ASP ALA GLU ILE MET GLY ILE PRO LEU LYS GLY SEQRES 10 B 255 SER GLY PRO PHE THR ILE SER LEU ALA ASN PRO SER LEU SEQRES 11 B 255 ALA VAL THR LEU THR GLY ALA PRO SER ALA GLY PRO ASN SEQRES 12 B 255 GLY GLN THR TYR LEU ARG LEU THR SER ALA SER ALA ALA SEQRES 13 B 255 ILE GLU PRO GLY THR PRO THR ALA ASP ILE LYS GLY PHE SEQRES 14 B 255 PHE PRO GLN PHE PRO PRO LEU GLU ALA ALA ALA SER ALA SEQRES 15 B 255 PHE ALA SER VAL VAL ALA PRO ASP VAL VAL GLN SER LEU SEQRES 16 B 255 LYS PRO THR LEU ASP LYS TRP LEU GLY GLY VAL ALA LEU SEQRES 17 B 255 GLN ARG ALA GLN ALA VAL PHE SER SER VAL SER TYR ASP SEQRES 18 B 255 ALA LEU PHE PRO GLY ARG THR PRO ALA ALA VAL GLY LEU SEQRES 19 B 255 TYR ARG ALA VAL PRO GLY LEU HIS THR LEU PRO LEU PRO SEQRES 20 B 255 LEU SER ALA PHE ALA TYR HIS LYS HET BCR A 301 40 HET BCR B 301 40 HETNAM BCR BETA-CAROTENE FORMUL 3 BCR 2(C40 H56) FORMUL 5 HOH *5(H2 O) HELIX 1 AA1 ASP A 33 ALA A 50 1 18 HELIX 2 AA2 GLY A 88 THR A 92 5 5 HELIX 3 AA3 PHE A 191 VAL A 236 1 46 HELIX 4 AA4 SER A 237 PHE A 242 1 6 HELIX 5 AA5 PHE B 34 ALA B 50 1 17 HELIX 6 AA6 GLY B 88 THR B 92 5 5 HELIX 7 AA7 PRO B 160 GLY B 162 5 3 HELIX 8 AA8 PHE B 191 VAL B 236 1 46 HELIX 9 AA9 SER B 237 PHE B 242 1 6 SHEET 1 AA1 2 GLY A 52 VAL A 53 0 SHEET 2 AA1 2 ALA A 58 GLU A 59 -1 O ALA A 58 N VAL A 53 SHEET 1 AA2 5 ILE A 70 SER A 74 0 SHEET 2 AA2 5 PHE A 77 SER A 87 -1 O VAL A 79 N HIS A 72 SHEET 3 AA2 5 TYR A 115 ILE A 128 -1 O ILE A 121 N ASP A 82 SHEET 4 AA2 5 ILE A 131 ALA A 144 -1 O LEU A 133 N ALA A 126 SHEET 5 AA2 5 THR A 179 ILE A 184 -1 O THR A 181 N SER A 142 SHEET 1 AA3 4 LEU A 93 ASP A 100 0 SHEET 2 AA3 4 THR A 105 THR A 111 -1 O THR A 111 N LEU A 93 SHEET 3 AA3 4 SER A 147 ALA A 158 -1 O VAL A 150 N ILE A 108 SHEET 4 AA3 4 THR A 164 GLU A 176 -1 O THR A 169 N THR A 153 SHEET 1 AA4 5 ILE B 70 SER B 74 0 SHEET 2 AA4 5 PHE B 77 SER B 87 -1 O VAL B 79 N HIS B 72 SHEET 3 AA4 5 TYR B 115 ILE B 128 -1 O THR B 117 N SER B 87 SHEET 4 AA4 5 ILE B 131 ALA B 144 -1 O LEU B 133 N ALA B 126 SHEET 5 AA4 5 THR B 179 ILE B 184 -1 O THR B 181 N SER B 142 SHEET 1 AA5 4 LEU B 93 ASP B 100 0 SHEET 2 AA5 4 THR B 105 THR B 111 -1 O THR B 111 N LEU B 93 SHEET 3 AA5 4 SER B 147 ALA B 158 -1 O VAL B 150 N ILE B 108 SHEET 4 AA5 4 THR B 164 GLU B 176 -1 O ALA B 174 N ALA B 149 SSBOND 1 CYS A 27 CYS A 37 1555 1555 2.57 SSBOND 2 CYS B 27 CYS B 37 1555 1555 2.92 CISPEP 1 ASP A 62 PRO A 63 0 1.83 CISPEP 2 ASP B 62 PRO B 63 0 2.66 CRYST1 55.390 75.510 224.220 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004460 0.00000 CONECT 22 96 CONECT 96 22 CONECT 1613 1687 CONECT 1687 1613 CONECT 3192 3193 3197 3204 3205 CONECT 3193 3192 3194 CONECT 3194 3193 3195 CONECT 3195 3194 3196 CONECT 3196 3195 3197 3203 CONECT 3197 3192 3196 3198 CONECT 3198 3197 3199 CONECT 3199 3198 3200 CONECT 3200 3199 3201 3206 CONECT 3201 3200 3202 CONECT 3202 3201 3207 CONECT 3203 3196 CONECT 3204 3192 CONECT 3205 3192 CONECT 3206 3200 CONECT 3207 3202 3208 CONECT 3208 3207 3209 3226 CONECT 3209 3208 3210 CONECT 3210 3209 3211 CONECT 3211 3210 3212 CONECT 3212 3211 3213 CONECT 3213 3212 3214 3227 CONECT 3214 3213 3215 CONECT 3215 3214 3216 CONECT 3216 3215 3217 CONECT 3217 3216 3218 3228 CONECT 3218 3217 3219 CONECT 3219 3218 3220 CONECT 3220 3219 3221 3225 CONECT 3221 3220 3222 3229 CONECT 3222 3221 3223 CONECT 3223 3222 3224 CONECT 3224 3223 3225 CONECT 3225 3220 3224 3230 3231 CONECT 3226 3208 CONECT 3227 3213 CONECT 3228 3217 CONECT 3229 3221 CONECT 3230 3225 CONECT 3231 3225 CONECT 3232 3233 3237 3244 3245 CONECT 3233 3232 3234 CONECT 3234 3233 3235 CONECT 3235 3234 3236 CONECT 3236 3235 3237 3243 CONECT 3237 3232 3236 3238 CONECT 3238 3237 3239 CONECT 3239 3238 3240 CONECT 3240 3239 3241 3246 CONECT 3241 3240 3242 CONECT 3242 3241 3247 CONECT 3243 3236 CONECT 3244 3232 CONECT 3245 3232 CONECT 3246 3240 CONECT 3247 3242 3248 CONECT 3248 3247 3249 3266 CONECT 3249 3248 3250 CONECT 3250 3249 3251 CONECT 3251 3250 3252 CONECT 3252 3251 3253 CONECT 3253 3252 3254 3267 CONECT 3254 3253 3255 CONECT 3255 3254 3256 CONECT 3256 3255 3257 CONECT 3257 3256 3258 3268 CONECT 3258 3257 3259 CONECT 3259 3258 3260 CONECT 3260 3259 3261 3265 CONECT 3261 3260 3262 3269 CONECT 3262 3261 3263 CONECT 3263 3262 3264 CONECT 3264 3263 3265 CONECT 3265 3260 3264 3270 3271 CONECT 3266 3248 CONECT 3267 3253 CONECT 3268 3257 CONECT 3269 3261 CONECT 3270 3265 CONECT 3271 3265 MASTER 452 0 2 9 20 0 0 6 3274 2 84 40 END