HEADER BIOSYNTHETIC PROTEIN 16-JUL-24 9IRV TITLE MULTIBODY REFINEMENT OF DIMERIC DARPIN AND ITS BOUND GFP ON A TITLE 2 SYMMETRIC SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: DARPIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 8 ORGANISM_COMMON: WATER JELLYFISH, MESONEMA VICTORIA; SOURCE 9 ORGANISM_TAXID: 6100; SOURCE 10 GENE: GFP; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DARPIN, DIMERIC, GFP, SCAFFOLD, BIOSYNTHETIC PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.LU,M.YAN,H.M.ZHANG,Q.HAO REVDAT 1 04-JUN-25 9IRV 0 JRNL AUTH X.LU,M.YAN,Y.CAI,X.SONG,H.CHEN,M.DU,Z.WANG,J.LI,L.NIU, JRNL AUTH 2 F.ZENG,Q.HAO,H.ZHANG JRNL TITL A LARGE, GENERAL AND MODULAR DARPIN-APOFERRITIN SCAFFOLD JRNL TITL 2 ENABLES THE VISUALIZATION OF SMALL PROTEINS BY CRYO-EM. JRNL REF IUCRJ V. 12 393 2025 JRNL REFN ESSN 2052-2525 JRNL PMID 40277178 JRNL DOI 10.1107/S2052252525003021 REMARK 2 REMARK 2 RESOLUTION. 3.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.470 REMARK 3 NUMBER OF PARTICLES : 113239 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9IRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 19-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049090. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 3D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DARPIN AND ITS BOUND GFP ON A REMARK 245 SYMMETRIC SCAFFOLD REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 128.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 ARG A 13 REMARK 465 MET A 14 REMARK 465 LYS A 15 REMARK 465 GLN A 16 REMARK 465 LEU A 17 REMARK 465 GLU A 18 REMARK 465 ASP A 19 REMARK 465 LYS A 20 REMARK 465 VAL A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 465 LEU A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 ASN A 28 REMARK 465 TYR A 29 REMARK 465 HIS A 30 REMARK 465 LEU A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 GLU A 34 REMARK 465 VAL A 35 REMARK 465 ALA A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 LEU A 41 REMARK 465 VAL A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 GLU A 52 REMARK 465 LEU A 53 REMARK 465 ILE A 218 REMARK 465 ASN A 219 REMARK 465 TYR A 220 REMARK 465 GLN A 221 REMARK 465 ILE A 222 REMARK 465 ASN A 223 REMARK 465 LEU A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 TYR A 227 REMARK 465 ALA A 228 REMARK 465 SER A 229 REMARK 465 TYR A 230 REMARK 465 VAL A 231 REMARK 465 TYR A 232 REMARK 465 LEU A 233 REMARK 465 SER A 234 REMARK 465 MET A 235 REMARK 465 SER A 236 REMARK 465 TYR A 237 REMARK 465 TYR A 238 REMARK 465 PHE A 239 REMARK 465 ASP A 240 REMARK 465 ARG A 241 REMARK 465 ASP A 242 REMARK 465 ASP A 243 REMARK 465 VAL A 244 REMARK 465 ALA A 245 REMARK 465 LEU A 246 REMARK 465 LYS A 247 REMARK 465 ASN A 248 REMARK 465 PHE A 249 REMARK 465 ALA A 250 REMARK 465 LYS A 251 REMARK 465 TYR A 252 REMARK 465 PHE A 253 REMARK 465 LEU A 254 REMARK 465 HIS A 255 REMARK 465 GLN A 256 REMARK 465 SER A 257 REMARK 465 HIS A 258 REMARK 465 GLU A 259 REMARK 465 GLU A 260 REMARK 465 ARG A 261 REMARK 465 GLU A 262 REMARK 465 HIS A 263 REMARK 465 ALA A 264 REMARK 465 GLU A 265 REMARK 465 LYS A 266 REMARK 465 LEU A 267 REMARK 465 MET A 268 REMARK 465 LYS A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 ASN A 272 REMARK 465 GLN A 273 REMARK 465 ARG A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 GLU A 277 REMARK 465 ILE A 278 REMARK 465 SER A 279 REMARK 465 LEU A 280 REMARK 465 GLN A 281 REMARK 465 SER A 282 REMARK 465 ILE A 283 REMARK 465 SER A 284 REMARK 465 SER A 285 REMARK 465 PRO A 286 REMARK 465 ASP A 287 REMARK 465 SER A 288 REMARK 465 ASP A 289 REMARK 465 ASP A 290 REMARK 465 TRP A 291 REMARK 465 GLU A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 LEU A 295 REMARK 465 ASN A 296 REMARK 465 ALA A 297 REMARK 465 MET A 298 REMARK 465 GLU A 299 REMARK 465 SER A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 HIS A 303 REMARK 465 LEU A 304 REMARK 465 GLU A 305 REMARK 465 LYS A 306 REMARK 465 ALA A 307 REMARK 465 VAL A 308 REMARK 465 ASN A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 LEU A 313 REMARK 465 ARG A 314 REMARK 465 LEU A 315 REMARK 465 HIS A 316 REMARK 465 LYS A 317 REMARK 465 LEU A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 ASP A 321 REMARK 465 CYS A 322 REMARK 465 ASN A 323 REMARK 465 ASP A 324 REMARK 465 PRO A 325 REMARK 465 HIS A 326 REMARK 465 LEU A 327 REMARK 465 CYS A 328 REMARK 465 ASP A 329 REMARK 465 PHE A 330 REMARK 465 ILE A 331 REMARK 465 GLU A 332 REMARK 465 THR A 333 REMARK 465 HIS A 334 REMARK 465 TYR A 335 REMARK 465 LEU A 336 REMARK 465 ASN A 337 REMARK 465 GLU A 338 REMARK 465 GLN A 339 REMARK 465 VAL A 340 REMARK 465 LYS A 341 REMARK 465 ALA A 342 REMARK 465 ILE A 343 REMARK 465 LYS A 344 REMARK 465 GLU A 345 REMARK 465 LEU A 346 REMARK 465 GLY A 347 REMARK 465 ASP A 348 REMARK 465 HIS A 349 REMARK 465 VAL A 350 REMARK 465 THR A 351 REMARK 465 ASN A 352 REMARK 465 LEU A 353 REMARK 465 ARG A 354 REMARK 465 LYS A 355 REMARK 465 MET A 356 REMARK 465 GLY A 357 REMARK 465 ALA A 358 REMARK 465 PRO A 359 REMARK 465 GLU A 360 REMARK 465 SER A 361 REMARK 465 GLY A 362 REMARK 465 LEU A 363 REMARK 465 ALA A 364 REMARK 465 GLU A 365 REMARK 465 TYR A 366 REMARK 465 LEU A 367 REMARK 465 PHE A 368 REMARK 465 ASP A 369 REMARK 465 LYS A 370 REMARK 465 HIS A 371 REMARK 465 THR A 372 REMARK 465 LEU A 373 REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 GLY A 376 REMARK 465 SER A 377 REMARK 465 GLY A 378 REMARK 465 ALA A 379 REMARK 465 GLU A 380 REMARK 465 ILE A 381 REMARK 465 GLU A 382 REMARK 465 GLN A 383 REMARK 465 ALA A 384 REMARK 465 LYS A 385 REMARK 465 LYS A 386 REMARK 465 GLU A 387 REMARK 465 ILE A 388 REMARK 465 ALA A 389 REMARK 465 TYR A 390 REMARK 465 LEU A 391 REMARK 465 ILE A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 ARG B 13 REMARK 465 MET B 14 REMARK 465 LYS B 15 REMARK 465 GLN B 16 REMARK 465 LEU B 17 REMARK 465 GLU B 18 REMARK 465 ASP B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 GLU B 22 REMARK 465 GLU B 23 REMARK 465 LEU B 24 REMARK 465 LEU B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 ASN B 28 REMARK 465 TYR B 29 REMARK 465 HIS B 30 REMARK 465 LEU B 31 REMARK 465 GLU B 32 REMARK 465 ASN B 33 REMARK 465 GLU B 34 REMARK 465 VAL B 35 REMARK 465 ALA B 36 REMARK 465 ARG B 37 REMARK 465 LEU B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 LEU B 41 REMARK 465 VAL B 42 REMARK 465 GLY B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 GLY B 46 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 GLY B 49 REMARK 465 GLY B 50 REMARK 465 SER B 51 REMARK 465 GLU B 52 REMARK 465 LEU B 53 REMARK 465 ILE B 218 REMARK 465 ASN B 219 REMARK 465 TYR B 220 REMARK 465 GLN B 221 REMARK 465 ILE B 222 REMARK 465 ASN B 223 REMARK 465 LEU B 224 REMARK 465 GLU B 225 REMARK 465 LEU B 226 REMARK 465 TYR B 227 REMARK 465 ALA B 228 REMARK 465 SER B 229 REMARK 465 TYR B 230 REMARK 465 VAL B 231 REMARK 465 TYR B 232 REMARK 465 LEU B 233 REMARK 465 SER B 234 REMARK 465 MET B 235 REMARK 465 SER B 236 REMARK 465 TYR B 237 REMARK 465 TYR B 238 REMARK 465 PHE B 239 REMARK 465 ASP B 240 REMARK 465 ARG B 241 REMARK 465 ASP B 242 REMARK 465 ASP B 243 REMARK 465 VAL B 244 REMARK 465 ALA B 245 REMARK 465 LEU B 246 REMARK 465 LYS B 247 REMARK 465 ASN B 248 REMARK 465 PHE B 249 REMARK 465 ALA B 250 REMARK 465 LYS B 251 REMARK 465 TYR B 252 REMARK 465 PHE B 253 REMARK 465 LEU B 254 REMARK 465 HIS B 255 REMARK 465 GLN B 256 REMARK 465 SER B 257 REMARK 465 HIS B 258 REMARK 465 GLU B 259 REMARK 465 GLU B 260 REMARK 465 ARG B 261 REMARK 465 GLU B 262 REMARK 465 HIS B 263 REMARK 465 ALA B 264 REMARK 465 GLU B 265 REMARK 465 LYS B 266 REMARK 465 LEU B 267 REMARK 465 MET B 268 REMARK 465 LYS B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 ASN B 272 REMARK 465 GLN B 273 REMARK 465 ARG B 274 REMARK 465 GLY B 275 REMARK 465 GLY B 276 REMARK 465 GLU B 277 REMARK 465 ILE B 278 REMARK 465 SER B 279 REMARK 465 LEU B 280 REMARK 465 GLN B 281 REMARK 465 SER B 282 REMARK 465 ILE B 283 REMARK 465 SER B 284 REMARK 465 SER B 285 REMARK 465 PRO B 286 REMARK 465 ASP B 287 REMARK 465 SER B 288 REMARK 465 ASP B 289 REMARK 465 ASP B 290 REMARK 465 TRP B 291 REMARK 465 GLU B 292 REMARK 465 SER B 293 REMARK 465 GLY B 294 REMARK 465 LEU B 295 REMARK 465 ASN B 296 REMARK 465 ALA B 297 REMARK 465 MET B 298 REMARK 465 GLU B 299 REMARK 465 SER B 300 REMARK 465 ALA B 301 REMARK 465 LEU B 302 REMARK 465 HIS B 303 REMARK 465 LEU B 304 REMARK 465 GLU B 305 REMARK 465 LYS B 306 REMARK 465 ALA B 307 REMARK 465 VAL B 308 REMARK 465 ASN B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 LEU B 312 REMARK 465 LEU B 313 REMARK 465 ARG B 314 REMARK 465 LEU B 315 REMARK 465 HIS B 316 REMARK 465 LYS B 317 REMARK 465 LEU B 318 REMARK 465 ALA B 319 REMARK 465 THR B 320 REMARK 465 ASP B 321 REMARK 465 CYS B 322 REMARK 465 ASN B 323 REMARK 465 ASP B 324 REMARK 465 PRO B 325 REMARK 465 HIS B 326 REMARK 465 LEU B 327 REMARK 465 CYS B 328 REMARK 465 ASP B 329 REMARK 465 PHE B 330 REMARK 465 ILE B 331 REMARK 465 GLU B 332 REMARK 465 THR B 333 REMARK 465 HIS B 334 REMARK 465 TYR B 335 REMARK 465 LEU B 336 REMARK 465 ASN B 337 REMARK 465 GLU B 338 REMARK 465 GLN B 339 REMARK 465 VAL B 340 REMARK 465 LYS B 341 REMARK 465 ALA B 342 REMARK 465 ILE B 343 REMARK 465 LYS B 344 REMARK 465 GLU B 345 REMARK 465 LEU B 346 REMARK 465 GLY B 347 REMARK 465 ASP B 348 REMARK 465 HIS B 349 REMARK 465 VAL B 350 REMARK 465 THR B 351 REMARK 465 ASN B 352 REMARK 465 LEU B 353 REMARK 465 ARG B 354 REMARK 465 LYS B 355 REMARK 465 MET B 356 REMARK 465 GLY B 357 REMARK 465 ALA B 358 REMARK 465 PRO B 359 REMARK 465 GLU B 360 REMARK 465 SER B 361 REMARK 465 GLY B 362 REMARK 465 LEU B 363 REMARK 465 ALA B 364 REMARK 465 GLU B 365 REMARK 465 TYR B 366 REMARK 465 LEU B 367 REMARK 465 PHE B 368 REMARK 465 ASP B 369 REMARK 465 LYS B 370 REMARK 465 HIS B 371 REMARK 465 THR B 372 REMARK 465 LEU B 373 REMARK 465 GLY B 374 REMARK 465 SER B 375 REMARK 465 GLY B 376 REMARK 465 SER B 377 REMARK 465 GLY B 378 REMARK 465 ALA B 379 REMARK 465 GLU B 380 REMARK 465 ILE B 381 REMARK 465 GLU B 382 REMARK 465 GLN B 383 REMARK 465 ALA B 384 REMARK 465 LYS B 385 REMARK 465 LYS B 386 REMARK 465 GLU B 387 REMARK 465 ILE B 388 REMARK 465 ALA B 389 REMARK 465 TYR B 390 REMARK 465 LEU B 391 REMARK 465 ILE B 392 REMARK 465 LYS B 393 REMARK 465 LYS B 394 REMARK 465 MET C 1 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 465 HIS C 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 83 -68.47 -90.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60822 RELATED DB: EMDB REMARK 900 DIMERIC DARPIN AND ITS BOUND GFP ON A SYMMETRIC SCAFFOLD REMARK 900 RELATED ID: EMD-61130 RELATED DB: EMDB REMARK 900 GFP BOUND TO 24-MER DARPIN-APOFERRITIN MODEL 6C DBREF 9IRV A 1 394 PDB 9IRV 9IRV 1 394 DBREF 9IRV B 1 394 PDB 9IRV 9IRV 1 394 DBREF1 9IRV C 1 231 UNP A0A059PIQ0_AEQVI DBREF2 9IRV C A0A059PIQ0 1 231 SEQADV 9IRV SER C 2 UNP A0A059PIQ ARG 2 CONFLICT SEQADV 9IRV ARG C 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 9IRV CRO C 66 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 9IRV CRO C 66 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 9IRV CRO C 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 9IRV SER C 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 9IRV ARG C 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 9IRV HIS C 232 UNP A0A059PIQ EXPRESSION TAG SEQADV 9IRV HIS C 233 UNP A0A059PIQ EXPRESSION TAG SEQADV 9IRV HIS C 234 UNP A0A059PIQ EXPRESSION TAG SEQADV 9IRV HIS C 235 UNP A0A059PIQ EXPRESSION TAG SEQADV 9IRV HIS C 236 UNP A0A059PIQ EXPRESSION TAG SEQRES 1 A 394 MET GLY HIS HIS HIS HIS HIS HIS GLY PRO GLY SER ARG SEQRES 2 A 394 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 3 A 394 LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 4 A 394 LYS LEU VAL GLY GLY SER GLY GLY SER GLY GLY SER GLU SEQRES 5 A 394 LEU GLY LYS GLU LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 6 A 394 ASP ASP GLU VAL ALA VAL LEU MET ALA ARG GLY ALA GLU SEQRES 7 A 394 VAL ASN ALA ALA ASP ASP VAL GLY VAL THR PRO LEU HIS SEQRES 8 A 394 LEU ALA ALA GLN ARG GLY HIS LEU ALA ILE VAL SER VAL SEQRES 9 A 394 LEU LEU ALA PHE GLY ALA SER VAL ASN ALA ALA ASP LEU SEQRES 10 A 394 TRP GLY GLN THR PRO LEU HIS LEU ALA ALA THR ALA GLY SEQRES 11 A 394 HIS LEU GLU ILE VAL GLU VAL LEU LEU ARG SER GLY ALA SEQRES 12 A 394 SER VAL ASN ALA ARG ASP ASN ILE GLY HIS THR PRO LEU SEQRES 13 A 394 HIS LEU ALA ALA TRP ALA GLY HIS LEU GLU ILE VAL GLU SEQRES 14 A 394 VAL LEU LEU ALA TYR GLY ALA ASP VAL PHE ALA GLN ASP SEQRES 15 A 394 LYS PHE GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN SEQRES 16 A 394 GLY ASN GLU ASP ILE ALA GLU VAL LEU GLN ARG LEU LEU SEQRES 17 A 394 GLU CYS ARG ARG ASP ALA GLU ALA ALA ILE ASN TYR GLN SEQRES 18 A 394 ILE ASN LEU GLU LEU TYR ALA SER TYR VAL TYR LEU SER SEQRES 19 A 394 MET SER TYR TYR PHE ASP ARG ASP ASP VAL ALA LEU LYS SEQRES 20 A 394 ASN PHE ALA LYS TYR PHE LEU HIS GLN SER HIS GLU GLU SEQRES 21 A 394 ARG GLU HIS ALA GLU LYS LEU MET LYS LEU GLN ASN GLN SEQRES 22 A 394 ARG GLY GLY GLU ILE SER LEU GLN SER ILE SER SER PRO SEQRES 23 A 394 ASP SER ASP ASP TRP GLU SER GLY LEU ASN ALA MET GLU SEQRES 24 A 394 SER ALA LEU HIS LEU GLU LYS ALA VAL ASN ALA SER LEU SEQRES 25 A 394 LEU ARG LEU HIS LYS LEU ALA THR ASP CYS ASN ASP PRO SEQRES 26 A 394 HIS LEU CYS ASP PHE ILE GLU THR HIS TYR LEU ASN GLU SEQRES 27 A 394 GLN VAL LYS ALA ILE LYS GLU LEU GLY ASP HIS VAL THR SEQRES 28 A 394 ASN LEU ARG LYS MET GLY ALA PRO GLU SER GLY LEU ALA SEQRES 29 A 394 GLU TYR LEU PHE ASP LYS HIS THR LEU GLY SER GLY SER SEQRES 30 A 394 GLY ALA GLU ILE GLU GLN ALA LYS LYS GLU ILE ALA TYR SEQRES 31 A 394 LEU ILE LYS LYS SEQRES 1 B 394 MET GLY HIS HIS HIS HIS HIS HIS GLY PRO GLY SER ARG SEQRES 2 B 394 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 3 B 394 LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 4 B 394 LYS LEU VAL GLY GLY SER GLY GLY SER GLY GLY SER GLU SEQRES 5 B 394 LEU GLY LYS GLU LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 6 B 394 ASP ASP GLU VAL ALA VAL LEU MET ALA ARG GLY ALA GLU SEQRES 7 B 394 VAL ASN ALA ALA ASP ASP VAL GLY VAL THR PRO LEU HIS SEQRES 8 B 394 LEU ALA ALA GLN ARG GLY HIS LEU ALA ILE VAL SER VAL SEQRES 9 B 394 LEU LEU ALA PHE GLY ALA SER VAL ASN ALA ALA ASP LEU SEQRES 10 B 394 TRP GLY GLN THR PRO LEU HIS LEU ALA ALA THR ALA GLY SEQRES 11 B 394 HIS LEU GLU ILE VAL GLU VAL LEU LEU ARG SER GLY ALA SEQRES 12 B 394 SER VAL ASN ALA ARG ASP ASN ILE GLY HIS THR PRO LEU SEQRES 13 B 394 HIS LEU ALA ALA TRP ALA GLY HIS LEU GLU ILE VAL GLU SEQRES 14 B 394 VAL LEU LEU ALA TYR GLY ALA ASP VAL PHE ALA GLN ASP SEQRES 15 B 394 LYS PHE GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN SEQRES 16 B 394 GLY ASN GLU ASP ILE ALA GLU VAL LEU GLN ARG LEU LEU SEQRES 17 B 394 GLU CYS ARG ARG ASP ALA GLU ALA ALA ILE ASN TYR GLN SEQRES 18 B 394 ILE ASN LEU GLU LEU TYR ALA SER TYR VAL TYR LEU SER SEQRES 19 B 394 MET SER TYR TYR PHE ASP ARG ASP ASP VAL ALA LEU LYS SEQRES 20 B 394 ASN PHE ALA LYS TYR PHE LEU HIS GLN SER HIS GLU GLU SEQRES 21 B 394 ARG GLU HIS ALA GLU LYS LEU MET LYS LEU GLN ASN GLN SEQRES 22 B 394 ARG GLY GLY GLU ILE SER LEU GLN SER ILE SER SER PRO SEQRES 23 B 394 ASP SER ASP ASP TRP GLU SER GLY LEU ASN ALA MET GLU SEQRES 24 B 394 SER ALA LEU HIS LEU GLU LYS ALA VAL ASN ALA SER LEU SEQRES 25 B 394 LEU ARG LEU HIS LYS LEU ALA THR ASP CYS ASN ASP PRO SEQRES 26 B 394 HIS LEU CYS ASP PHE ILE GLU THR HIS TYR LEU ASN GLU SEQRES 27 B 394 GLN VAL LYS ALA ILE LYS GLU LEU GLY ASP HIS VAL THR SEQRES 28 B 394 ASN LEU ARG LYS MET GLY ALA PRO GLU SER GLY LEU ALA SEQRES 29 B 394 GLU TYR LEU PHE ASP LYS HIS THR LEU GLY SER GLY SER SEQRES 30 B 394 GLY ALA GLU ILE GLU GLN ALA LYS LYS GLU ILE ALA TYR SEQRES 31 B 394 LEU ILE LYS LYS SEQRES 1 C 234 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 C 234 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 C 234 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 C 234 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 C 234 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 C 234 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 C 234 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 C 234 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 C 234 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 C 234 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 C 234 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE SEQRES 12 C 234 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 13 C 234 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL SEQRES 14 C 234 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 C 234 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 C 234 ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS ASP SEQRES 17 C 234 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 C 234 VAL THR ALA ALA GLY ILE THR HIS HIS HIS HIS HIS HIS MODRES 9IRV CRO C 66 THR CHROMOPHORE MODRES 9IRV CRO C 66 TYR CHROMOPHORE MODRES 9IRV CRO C 66 GLY CHROMOPHORE HET CRO C 66 22 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 3 CRO C15 H17 N3 O5 HELIX 1 AA1 LEU A 57 ALA A 63 1 7 HELIX 2 AA2 GLN A 65 ARG A 75 1 11 HELIX 3 AA3 THR A 88 ARG A 96 1 9 HELIX 4 AA4 HIS A 98 PHE A 108 1 11 HELIX 5 AA5 THR A 121 GLY A 130 1 10 HELIX 6 AA6 HIS A 131 SER A 141 1 11 HELIX 7 AA7 THR A 154 GLY A 163 1 10 HELIX 8 AA8 HIS A 164 TYR A 174 1 11 HELIX 9 AA9 THR A 187 ASP A 194 1 8 HELIX 10 AB1 GLU A 198 ALA A 216 1 19 HELIX 11 AB2 GLU B 56 GLY B 64 1 9 HELIX 12 AB3 ASP B 66 ARG B 75 1 10 HELIX 13 AB4 THR B 88 ARG B 96 1 9 HELIX 14 AB5 LEU B 99 PHE B 108 1 10 HELIX 15 AB6 THR B 121 GLY B 130 1 10 HELIX 16 AB7 HIS B 131 SER B 141 1 11 HELIX 17 AB8 THR B 154 GLY B 163 1 10 HELIX 18 AB9 HIS B 164 TYR B 174 1 11 HELIX 19 AC1 THR B 187 ASP B 194 1 8 HELIX 20 AC2 GLU B 198 ALA B 216 1 19 HELIX 21 AC3 LYS C 3 LEU C 7 1 5 HELIX 22 AC4 PRO C 56 VAL C 61 1 6 HELIX 23 AC5 VAL C 68 SER C 72 5 5 HELIX 24 AC6 PRO C 75 ASP C 82 5 8 HELIX 25 AC7 PHE C 83 MET C 88 5 6 SHEET 1 AA112 VAL C 11 VAL C 22 0 SHEET 2 AA112 HIS C 25 ASP C 36 -1 O GLY C 31 N VAL C 16 SHEET 3 AA112 LYS C 41 ILE C 47 -1 O LYS C 41 N ASP C 36 SHEET 4 AA112 HIS C 217 ALA C 227 -1 O LEU C 220 N LEU C 44 SHEET 5 AA112 HIS C 199 SER C 208 -1 N GLN C 204 O PHE C 223 SHEET 6 AA112 HIS C 148 ASP C 155 -1 N ILE C 152 O HIS C 199 SHEET 7 AA112 GLY C 160 ASN C 170 -1 O LYS C 162 N THR C 153 SHEET 8 AA112 VAL C 176 PRO C 187 -1 O GLN C 177 N HIS C 169 SHEET 9 AA112 TYR C 92 PHE C 100 -1 N VAL C 93 O THR C 186 SHEET 10 AA112 THR C 105 GLU C 115 -1 O THR C 108 N ARG C 96 SHEET 11 AA112 THR C 118 ILE C 128 -1 O VAL C 120 N LYS C 113 SHEET 12 AA112 VAL C 11 VAL C 22 1 N ASP C 19 O ILE C 123 LINK C LEU C 64 N1 CRO C 66 1555 1555 1.27 LINK C3 CRO C 66 N VAL C 68 1555 1555 1.45 CISPEP 1 MET C 88 PRO C 89 0 -7.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1216 ALA A 217 TER 2432 ALA B 217 HETATM 2903 N1 CRO C 66 138.754 155.823 258.370 1.00 0.00 N HETATM 2904 CA1 CRO C 66 138.051 154.881 257.545 1.00 0.00 C HETATM 2905 CB1 CRO C 66 138.317 155.172 256.053 1.00 0.00 C HETATM 2906 CG1 CRO C 66 137.974 156.617 255.741 1.00 0.00 C HETATM 2907 OG1 CRO C 66 139.617 154.892 255.640 1.00 0.00 O HETATM 2908 C1 CRO C 66 138.359 153.492 257.941 1.00 0.00 C HETATM 2909 N2 CRO C 66 139.290 152.765 257.316 1.00 0.00 N HETATM 2910 N3 CRO C 66 137.808 152.878 258.996 1.00 0.00 N HETATM 2911 C2 CRO C 66 138.344 151.730 259.024 1.00 0.00 C HETATM 2912 O2 CRO C 66 138.142 150.835 259.832 1.00 0.00 O HETATM 2913 CA2 CRO C 66 139.317 151.626 257.967 1.00 0.00 C HETATM 2914 CA3 CRO C 66 136.844 153.445 259.882 1.00 0.00 C HETATM 2915 C3 CRO C 66 135.407 153.018 259.745 1.00 0.00 C HETATM 2916 O3 CRO C 66 134.697 153.087 260.716 1.00 0.00 O HETATM 2917 CB2 CRO C 66 140.127 150.461 257.674 1.00 0.00 C HETATM 2918 CG2 CRO C 66 141.211 150.280 256.696 1.00 0.00 C HETATM 2919 CD1 CRO C 66 141.608 151.239 255.794 1.00 0.00 C HETATM 2920 CD2 CRO C 66 141.998 149.168 256.846 1.00 0.00 C HETATM 2921 CE1 CRO C 66 142.698 151.001 254.977 1.00 0.00 C HETATM 2922 CE2 CRO C 66 143.062 148.924 256.037 1.00 0.00 C HETATM 2923 CZ CRO C 66 143.417 149.822 255.074 1.00 0.00 C HETATM 2924 OH CRO C 66 144.452 149.580 254.278 1.00 0.00 O TER 4261 HIS C 232 CONECT 2897 2903 CONECT 2903 2897 2904 CONECT 2904 2903 2905 2908 CONECT 2905 2904 2906 2907 CONECT 2906 2905 CONECT 2907 2905 CONECT 2908 2904 2909 2910 CONECT 2909 2908 2913 CONECT 2910 2908 2911 2914 CONECT 2911 2910 2912 2913 CONECT 2912 2911 CONECT 2913 2909 2911 2917 CONECT 2914 2910 2915 CONECT 2915 2914 2916 2925 CONECT 2916 2915 CONECT 2917 2913 2918 CONECT 2918 2917 2919 2920 CONECT 2919 2918 2921 CONECT 2920 2918 2922 CONECT 2921 2919 2923 CONECT 2922 2920 2923 CONECT 2923 2921 2922 2924 CONECT 2924 2923 CONECT 2925 2915 MASTER 590 0 1 25 12 0 0 6 4258 3 24 80 END