HEADER MOTOR PROTEIN 25-JUL-24 9IWQ TITLE SALMONELLA ENTERICA SEROVAR TYPHIMURIUM FLIC(G426A)DELTA(204-292) TITLE 2 FORMING THE L-TYPE STRAIGHT FILAMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHASE 1-I FLAGELLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. LT2; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 GENE: FLIC, FLAF, HAG, STM1959; SOURCE 6 EXPRESSION_SYSTEM: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 7 TYPHIMURIUM STR. LT2; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 99287 KEYWDS FLAGELLIN, TAIL, FLAGELLA, FILAMENT, MOTOR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.WARAICH,F.MAKINO,T.MIYATA,M.KINOSHITA,T.MINAMINO,K.NAMBA REVDAT 1 07-AUG-24 9IWQ 0 JRNL AUTH K.WARAICH,F.MAKINO,T.MIYATA,M.KINOSHITA,T.MINAMINO,K.NAMBA JRNL TITL SALMONELLA ENTERICA SEROVAR TYPHIMURIUM JRNL TITL 2 FLIC(G426A)DELTA(204-292) FORMING THE L-TYPE STRAIGHT JRNL TITL 3 FILAMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : ISOLDE, UCSF CHIMERAX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3A5X REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.080 REMARK 3 NUMBER OF PARTICLES : 726742 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9IWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049534. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : SALMONELLA ENTERICA SEROVAR REMARK 245 TYPHIMURIUM FLIC(G426A) REMARK 245 DELTA(204-292) FORMING THE L- REMARK 245 TYPE STRAIGHT FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL CRYO ARM 300 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 60000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 275 REMARK 465 VAL A 276 REMARK 465 THR A 277 REMARK 465 GLY A 278 REMARK 465 TYR A 279 REMARK 465 ALA A 280 REMARK 465 ASP A 281 REMARK 465 THR A 282 REMARK 465 THR A 283 REMARK 465 ILE A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 ASP A 287 REMARK 465 ASN A 288 REMARK 465 SER A 289 REMARK 465 THR A 290 REMARK 465 PHE A 291 REMARK 465 LYS A 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 30 CZ ARG A 30 NH2 -0.080 REMARK 500 ARG A 36 CZ ARG A 36 NH2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 494 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60959 RELATED DB: EMDB REMARK 900 SALMONELLA ENTERICA SEROVAR TYPHIMURIUM FLIC(G426A)DELTA(204-292) REMARK 900 FORMING THE L-TYPE STRAIGHT FILAMENT DBREF 9IWQ A 1 494 UNP P06179 FLIC_SALTY 2 495 SEQADV 9IWQ A UNP P06179 LYS 204 DELETION SEQADV 9IWQ A UNP P06179 ALA 205 DELETION SEQADV 9IWQ A UNP P06179 SER 206 DELETION SEQADV 9IWQ A UNP P06179 ALA 207 DELETION SEQADV 9IWQ A UNP P06179 THR 208 DELETION SEQADV 9IWQ A UNP P06179 GLY 209 DELETION SEQADV 9IWQ A UNP P06179 LEU 210 DELETION SEQADV 9IWQ A UNP P06179 GLY 211 DELETION SEQADV 9IWQ A UNP P06179 GLY 212 DELETION SEQADV 9IWQ A UNP P06179 THR 213 DELETION SEQADV 9IWQ A UNP P06179 ASP 214 DELETION SEQADV 9IWQ A UNP P06179 GLN 215 DELETION SEQADV 9IWQ A UNP P06179 LYS 216 DELETION SEQADV 9IWQ A UNP P06179 ILE 217 DELETION SEQADV 9IWQ A UNP P06179 ASP 218 DELETION SEQADV 9IWQ A UNP P06179 GLY 219 DELETION SEQADV 9IWQ A UNP P06179 ASP 220 DELETION SEQADV 9IWQ A UNP P06179 LEU 221 DELETION SEQADV 9IWQ A UNP P06179 LYS 222 DELETION SEQADV 9IWQ A UNP P06179 PHE 223 DELETION SEQADV 9IWQ A UNP P06179 ASP 224 DELETION SEQADV 9IWQ A UNP P06179 ASP 225 DELETION SEQADV 9IWQ A UNP P06179 THR 226 DELETION SEQADV 9IWQ A UNP P06179 THR 227 DELETION SEQADV 9IWQ A UNP P06179 GLY 228 DELETION SEQADV 9IWQ A UNP P06179 LYS 229 DELETION SEQADV 9IWQ A UNP P06179 TYR 230 DELETION SEQADV 9IWQ A UNP P06179 TYR 231 DELETION SEQADV 9IWQ A UNP P06179 ALA 232 DELETION SEQADV 9IWQ A UNP P06179 LYS 233 DELETION SEQADV 9IWQ A UNP P06179 VAL 234 DELETION SEQADV 9IWQ A UNP P06179 THR 235 DELETION SEQADV 9IWQ A UNP P06179 VAL 236 DELETION SEQADV 9IWQ A UNP P06179 THR 237 DELETION SEQADV 9IWQ A UNP P06179 GLY 238 DELETION SEQADV 9IWQ A UNP P06179 GLY 239 DELETION SEQADV 9IWQ A UNP P06179 THR 240 DELETION SEQADV 9IWQ A UNP P06179 GLY 241 DELETION SEQADV 9IWQ A UNP P06179 LYS 242 DELETION SEQADV 9IWQ A UNP P06179 ASP 243 DELETION SEQADV 9IWQ A UNP P06179 GLY 244 DELETION SEQADV 9IWQ A UNP P06179 TYR 245 DELETION SEQADV 9IWQ A UNP P06179 TYR 246 DELETION SEQADV 9IWQ A UNP P06179 GLU 247 DELETION SEQADV 9IWQ A UNP P06179 VAL 248 DELETION SEQADV 9IWQ A UNP P06179 SER 249 DELETION SEQADV 9IWQ A UNP P06179 VAL 250 DELETION SEQADV 9IWQ A UNP P06179 ASP 251 DELETION SEQADV 9IWQ A UNP P06179 LYS 252 DELETION SEQADV 9IWQ A UNP P06179 THR 253 DELETION SEQADV 9IWQ A UNP P06179 ASN 254 DELETION SEQADV 9IWQ A UNP P06179 GLY 255 DELETION SEQADV 9IWQ A UNP P06179 GLU 256 DELETION SEQADV 9IWQ A UNP P06179 VAL 257 DELETION SEQADV 9IWQ A UNP P06179 THR 258 DELETION SEQADV 9IWQ A UNP P06179 LEU 259 DELETION SEQADV 9IWQ A UNP P06179 ALA 260 DELETION SEQADV 9IWQ A UNP P06179 GLY 261 DELETION SEQADV 9IWQ A UNP P06179 GLY 262 DELETION SEQADV 9IWQ A UNP P06179 ALA 263 DELETION SEQADV 9IWQ A UNP P06179 THR 264 DELETION SEQADV 9IWQ A UNP P06179 SER 265 DELETION SEQADV 9IWQ A UNP P06179 PRO 266 DELETION SEQADV 9IWQ A UNP P06179 LEU 267 DELETION SEQADV 9IWQ A UNP P06179 THR 268 DELETION SEQADV 9IWQ A UNP P06179 GLY 269 DELETION SEQADV 9IWQ A UNP P06179 GLY 270 DELETION SEQADV 9IWQ A UNP P06179 LEU 271 DELETION SEQADV 9IWQ A UNP P06179 PRO 272 DELETION SEQADV 9IWQ A UNP P06179 ALA 273 DELETION SEQADV 9IWQ A UNP P06179 THR 274 DELETION SEQADV 9IWQ A UNP P06179 ALA 275 DELETION SEQADV 9IWQ A UNP P06179 THR 276 DELETION SEQADV 9IWQ A UNP P06179 GLU 277 DELETION SEQADV 9IWQ A UNP P06179 ASP 278 DELETION SEQADV 9IWQ A UNP P06179 VAL 279 DELETION SEQADV 9IWQ A UNP P06179 LYS 280 DELETION SEQADV 9IWQ A UNP P06179 ASN 281 DELETION SEQADV 9IWQ A UNP P06179 VAL 282 DELETION SEQADV 9IWQ A UNP P06179 GLN 283 DELETION SEQADV 9IWQ A UNP P06179 VAL 284 DELETION SEQADV 9IWQ A UNP P06179 ALA 285 DELETION SEQADV 9IWQ A UNP P06179 ASN 286 DELETION SEQADV 9IWQ A UNP P06179 ALA 287 DELETION SEQADV 9IWQ A UNP P06179 ASP 288 DELETION SEQADV 9IWQ A UNP P06179 LEU 289 DELETION SEQADV 9IWQ A UNP P06179 THR 290 DELETION SEQADV 9IWQ A UNP P06179 GLU 291 DELETION SEQADV 9IWQ A UNP P06179 ALA 292 DELETION SEQADV 9IWQ ALA A 426 UNP P06179 GLY 427 ENGINEERED MUTATION SEQRES 1 A 405 ALA GLN VAL ILE ASN THR ASN SER LEU SER LEU LEU THR SEQRES 2 A 405 GLN ASN ASN LEU ASN LYS SER GLN SER ALA LEU GLY THR SEQRES 3 A 405 ALA ILE GLU ARG LEU SER SER GLY LEU ARG ILE ASN SER SEQRES 4 A 405 ALA LYS ASP ASP ALA ALA GLY GLN ALA ILE ALA ASN ARG SEQRES 5 A 405 PHE THR ALA ASN ILE LYS GLY LEU THR GLN ALA SER ARG SEQRES 6 A 405 ASN ALA ASN ASP GLY ILE SER ILE ALA GLN THR THR GLU SEQRES 7 A 405 GLY ALA LEU ASN GLU ILE ASN ASN ASN LEU GLN ARG VAL SEQRES 8 A 405 ARG GLU LEU ALA VAL GLN SER ALA ASN SER THR ASN SER SEQRES 9 A 405 GLN SER ASP LEU ASP SER ILE GLN ALA GLU ILE THR GLN SEQRES 10 A 405 ARG LEU ASN GLU ILE ASP ARG VAL SER GLY GLN THR GLN SEQRES 11 A 405 PHE ASN GLY VAL LYS VAL LEU ALA GLN ASP ASN THR LEU SEQRES 12 A 405 THR ILE GLN VAL GLY ALA ASN ASP GLY GLU THR ILE ASP SEQRES 13 A 405 ILE ASP LEU LYS GLN ILE ASN SER GLN THR LEU GLY LEU SEQRES 14 A 405 ASP THR LEU ASN VAL GLN GLN LYS TYR LYS VAL SER ASP SEQRES 15 A 405 THR ALA ALA THR VAL THR GLY TYR ALA ASP THR THR ILE SEQRES 16 A 405 ALA LEU ASP ASN SER THR PHE LYS ALA ALA LEU THR ALA SEQRES 17 A 405 ALA GLY VAL THR GLY THR ALA SER VAL VAL LYS MET SER SEQRES 18 A 405 TYR THR ASP ASN ASN GLY LYS THR ILE ASP GLY GLY LEU SEQRES 19 A 405 ALA VAL LYS VAL GLY ASP ASP TYR TYR SER ALA THR GLN SEQRES 20 A 405 ASN LYS ASP GLY SER ILE SER ILE ASN THR THR LYS TYR SEQRES 21 A 405 THR ALA ASP ASP GLY THR SER LYS THR ALA LEU ASN LYS SEQRES 22 A 405 LEU GLY GLY ALA ASP GLY LYS THR GLU VAL VAL SER ILE SEQRES 23 A 405 GLY GLY LYS THR TYR ALA ALA SER LYS ALA GLU GLY HIS SEQRES 24 A 405 ASN PHE LYS ALA GLN PRO ASP LEU ALA GLU ALA ALA ALA SEQRES 25 A 405 THR THR THR GLU ASN PRO LEU GLN LYS ILE ASP ALA ALA SEQRES 26 A 405 LEU ALA GLN VAL ASP THR LEU ARG SER ASP LEU ALA ALA SEQRES 27 A 405 VAL GLN ASN ARG PHE ASN SER ALA ILE THR ASN LEU GLY SEQRES 28 A 405 ASN THR VAL ASN ASN LEU THR SER ALA ARG SER ARG ILE SEQRES 29 A 405 GLU ASP SER ASP TYR ALA THR GLU VAL SER ASN MET SER SEQRES 30 A 405 ARG ALA GLN ILE LEU GLN GLN ALA GLY THR SER VAL LEU SEQRES 31 A 405 ALA GLN ALA ASN GLN VAL PRO GLN ASN VAL LEU SER LEU SEQRES 32 A 405 LEU ARG HELIX 1 AA1 ASN A 7 GLY A 34 1 28 HELIX 2 AA2 ASP A 43 ALA A 99 1 57 HELIX 3 AA3 SER A 104 THR A 129 1 26 HELIX 4 AA4 LEU A 295 GLY A 299 5 5 HELIX 5 AA5 ALA A 382 GLU A 386 1 5 HELIX 6 AA6 ASN A 406 ASP A 455 1 50 HELIX 7 AA7 ASP A 457 VAL A 485 1 29 HELIX 8 AA8 PRO A 486 ARG A 494 1 9 SHEET 1 AA1 2 ASN A 141 GLN A 146 0 SHEET 2 AA1 2 THR A 154 LEU A 159 -1 O LEU A 159 N ASN A 141 SHEET 1 AA2 5 LYS A 179 ALA A 184 0 SHEET 2 AA2 5 SER A 305 THR A 312 -1 O LYS A 308 N THR A 183 SHEET 3 AA2 5 THR A 318 LYS A 326 -1 O GLY A 322 N MET A 309 SHEET 4 AA2 5 TYR A 331 GLN A 336 -1 O TYR A 332 N VAL A 325 SHEET 5 AA2 5 ILE A 342 ILE A 344 -1 O SER A 343 N THR A 335 SHEET 1 AA3 2 THR A 346 THR A 350 0 SHEET 2 AA3 2 SER A 356 LEU A 360 -1 O LYS A 357 N TYR A 349 SHEET 1 AA4 3 LYS A 362 GLY A 364 0 SHEET 2 AA4 3 THR A 370 ILE A 375 -1 O THR A 370 N GLY A 364 SHEET 3 AA4 3 LYS A 378 ALA A 381 -1 O TYR A 380 N VAL A 373 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000