data_9J1O # _entry.id 9J1O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9J1O pdb_00009j1o 10.2210/pdb9j1o/pdb WWPDB D_1300049852 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-06-18 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9J1O _pdbx_database_status.recvd_initial_deposition_date 2024-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 9J1N _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email kamitori.shigehiro@kagawa-u.ac.jp _pdbx_contact_author.name_first Shigehiro _pdbx_contact_author.name_last Kamitori _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3950-3372 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nonaka, Y.' 1 0000-0003-0302-5409 'Kamitori, S.' 2 0000-0002-3950-3372 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 749 _citation.language ? _citation.page_first 151354 _citation.page_last 151354 _citation.title ;Structural analysis of Spi-B DNA-binding Ets domain recognizing 5'-AGAA-3' and 5'-GGAA-3' sequences. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2025.151354 _citation.pdbx_database_id_PubMed 39892964 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nonaka, Y.' 1 ? primary 'Hoshino, K.' 2 ? primary 'Nakamura, T.' 3 ? primary 'Kamitori, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(3D1)P*TP*GP*AP*AP*AP*AP*GP*GP*GP*AP*AP*TP*TP*GP*G)-3') ; 4722.097 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*(THM)P*CP*CP*AP*AP*TP*TP*CP*CP*CP*TP*TP*TP*TP*CP*A)-3') ; 4454.910 1 ? ? ? ? 3 polymer man 'Transcription factor Spi-B' 12377.523 1 ? ? ? ? 4 non-polymer syn '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 251.242 1 ? ? ? ? 5 non-polymer syn THYMIDINE 242.229 1 ? ? ? ? 6 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 7 water nat water 18.015 47 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DA)(DA)(DA)(DA)(DG)(DG)(DG)(DA)(DA)(DT)(DT)(DG)(DG)' TGAAAAGGGAATTGG A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DA)(DT)(DT)(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DC)(DA)' CCAATTCCCTTTTCA B ? 3 'polypeptide(L)' no no ;GSRGSEAGARKKLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAK TGEIRKVKRKLTYQFDSALLPASRHV ; ;GSRGSEAGARKKLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAK TGEIRKVKRKLTYQFDSALLPASRHV ; C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' 3D1 5 THYMIDINE THM 6 'TETRAETHYLENE GLYCOL' PG4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DA n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DG n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DC n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DT n 2 14 DC n 2 15 DA n 3 1 GLY n 3 2 SER n 3 3 ARG n 3 4 GLY n 3 5 SER n 3 6 GLU n 3 7 ALA n 3 8 GLY n 3 9 ALA n 3 10 ARG n 3 11 LYS n 3 12 LYS n 3 13 LEU n 3 14 ARG n 3 15 LEU n 3 16 TYR n 3 17 GLN n 3 18 PHE n 3 19 LEU n 3 20 LEU n 3 21 GLY n 3 22 LEU n 3 23 LEU n 3 24 LEU n 3 25 ARG n 3 26 GLY n 3 27 ASP n 3 28 MET n 3 29 ARG n 3 30 GLU n 3 31 CYS n 3 32 VAL n 3 33 TRP n 3 34 TRP n 3 35 VAL n 3 36 GLU n 3 37 PRO n 3 38 GLY n 3 39 ALA n 3 40 GLY n 3 41 VAL n 3 42 PHE n 3 43 GLN n 3 44 PHE n 3 45 SER n 3 46 SER n 3 47 LYS n 3 48 HIS n 3 49 LYS n 3 50 GLU n 3 51 LEU n 3 52 LEU n 3 53 ALA n 3 54 ARG n 3 55 ARG n 3 56 TRP n 3 57 GLY n 3 58 GLN n 3 59 GLN n 3 60 LYS n 3 61 GLY n 3 62 ASN n 3 63 ARG n 3 64 LYS n 3 65 ARG n 3 66 MET n 3 67 THR n 3 68 TYR n 3 69 GLN n 3 70 LYS n 3 71 LEU n 3 72 ALA n 3 73 ARG n 3 74 ALA n 3 75 LEU n 3 76 ARG n 3 77 ASN n 3 78 TYR n 3 79 ALA n 3 80 LYS n 3 81 THR n 3 82 GLY n 3 83 GLU n 3 84 ILE n 3 85 ARG n 3 86 LYS n 3 87 VAL n 3 88 LYS n 3 89 ARG n 3 90 LYS n 3 91 LEU n 3 92 THR n 3 93 TYR n 3 94 GLN n 3 95 PHE n 3 96 ASP n 3 97 SER n 3 98 ALA n 3 99 LEU n 3 100 LEU n 3 101 PRO n 3 102 ALA n 3 103 SER n 3 104 ARG n 3 105 HIS n 3 106 VAL n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 106 _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Spib _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 15 'Mus musculus' ? 10090 ? 2 1 sample 1 15 'Mus musculus' ? 10090 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3D1 non-polymer . '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' "2'-DEOXYADENOSINE" 'C10 H13 N5 O3' 251.242 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THM 'DNA OH 5 prime terminus' . THYMIDINE ;DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE ; 'C10 H14 N2 O5' 242.229 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT DT A . n A 1 2 DG 2 3 3 DG DG A . n A 1 3 DA 3 4 4 DA DA A . n A 1 4 DA 4 5 5 DA DA A . n A 1 5 DA 5 6 6 DA DA A . n A 1 6 DA 6 7 7 DA DA A . n A 1 7 DG 7 8 8 DG DG A . n A 1 8 DG 8 9 9 DG DG A . n A 1 9 DG 9 10 10 DG DG A . n A 1 10 DA 10 11 11 DA DA A . n A 1 11 DA 11 12 12 DA DA A . n A 1 12 DT 12 13 13 DT DT A . n A 1 13 DT 13 14 14 DT DT A . n A 1 14 DG 14 15 15 DG DG A . n A 1 15 DG 15 16 16 DG DG A . n B 2 1 DC 1 2 2 DC DC B . n B 2 2 DC 2 3 3 DC DC B . n B 2 3 DA 3 4 4 DA DA B . n B 2 4 DA 4 5 5 DA DA B . n B 2 5 DT 5 6 6 DT DT B . n B 2 6 DT 6 7 7 DT DT B . n B 2 7 DC 7 8 8 DC DC B . n B 2 8 DC 8 9 9 DC DC B . n B 2 9 DC 9 10 10 DC DC B . n B 2 10 DT 10 11 11 DT DT B . n B 2 11 DT 11 12 12 DT DT B . n B 2 12 DT 12 13 13 DT DT B . n B 2 13 DT 13 14 14 DT DT B . n B 2 14 DC 14 15 15 DC DC B . n B 2 15 DA 15 16 16 DA DA B . n C 3 1 GLY 1 162 ? ? ? C . n C 3 2 SER 2 163 ? ? ? C . n C 3 3 ARG 3 164 ? ? ? C . n C 3 4 GLY 4 165 ? ? ? C . n C 3 5 SER 5 166 ? ? ? C . n C 3 6 GLU 6 167 ? ? ? C . n C 3 7 ALA 7 168 ? ? ? C . n C 3 8 GLY 8 169 169 GLY GLY C . n C 3 9 ALA 9 170 170 ALA ALA C . n C 3 10 ARG 10 171 171 ARG ARG C . n C 3 11 LYS 11 172 172 LYS LYS C . n C 3 12 LYS 12 173 173 LYS LYS C . n C 3 13 LEU 13 174 174 LEU LEU C . n C 3 14 ARG 14 175 175 ARG ARG C . n C 3 15 LEU 15 176 176 LEU LEU C . n C 3 16 TYR 16 177 177 TYR TYR C . n C 3 17 GLN 17 178 178 GLN GLN C . n C 3 18 PHE 18 179 179 PHE PHE C . n C 3 19 LEU 19 180 180 LEU LEU C . n C 3 20 LEU 20 181 181 LEU LEU C . n C 3 21 GLY 21 182 182 GLY GLY C . n C 3 22 LEU 22 183 183 LEU LEU C . n C 3 23 LEU 23 184 184 LEU LEU C . n C 3 24 LEU 24 185 185 LEU LEU C . n C 3 25 ARG 25 186 186 ARG ARG C . n C 3 26 GLY 26 187 187 GLY GLY C . n C 3 27 ASP 27 188 188 ASP ASP C . n C 3 28 MET 28 189 189 MET MET C . n C 3 29 ARG 29 190 190 ARG ARG C . n C 3 30 GLU 30 191 191 GLU GLU C . n C 3 31 CYS 31 192 192 CYS CYS C . n C 3 32 VAL 32 193 193 VAL VAL C . n C 3 33 TRP 33 194 194 TRP TRP C . n C 3 34 TRP 34 195 195 TRP TRP C . n C 3 35 VAL 35 196 196 VAL VAL C . n C 3 36 GLU 36 197 197 GLU GLU C . n C 3 37 PRO 37 198 198 PRO PRO C . n C 3 38 GLY 38 199 199 GLY GLY C . n C 3 39 ALA 39 200 200 ALA ALA C . n C 3 40 GLY 40 201 201 GLY GLY C . n C 3 41 VAL 41 202 202 VAL VAL C . n C 3 42 PHE 42 203 203 PHE PHE C . n C 3 43 GLN 43 204 204 GLN GLN C . n C 3 44 PHE 44 205 205 PHE PHE C . n C 3 45 SER 45 206 206 SER SER C . n C 3 46 SER 46 207 207 SER SER C . n C 3 47 LYS 47 208 208 LYS LYS C . n C 3 48 HIS 48 209 209 HIS HIS C . n C 3 49 LYS 49 210 210 LYS LYS C . n C 3 50 GLU 50 211 211 GLU GLU C . n C 3 51 LEU 51 212 212 LEU LEU C . n C 3 52 LEU 52 213 213 LEU LEU C . n C 3 53 ALA 53 214 214 ALA ALA C . n C 3 54 ARG 54 215 215 ARG ARG C . n C 3 55 ARG 55 216 216 ARG ARG C . n C 3 56 TRP 56 217 217 TRP TRP C . n C 3 57 GLY 57 218 218 GLY GLY C . n C 3 58 GLN 58 219 219 GLN GLN C . n C 3 59 GLN 59 220 220 GLN GLN C . n C 3 60 LYS 60 221 221 LYS LYS C . n C 3 61 GLY 61 222 222 GLY GLY C . n C 3 62 ASN 62 223 223 ASN ASN C . n C 3 63 ARG 63 224 224 ARG ARG C . n C 3 64 LYS 64 225 225 LYS LYS C . n C 3 65 ARG 65 226 226 ARG ARG C . n C 3 66 MET 66 227 227 MET MET C . n C 3 67 THR 67 228 228 THR THR C . n C 3 68 TYR 68 229 229 TYR TYR C . n C 3 69 GLN 69 230 230 GLN GLN C . n C 3 70 LYS 70 231 231 LYS LYS C . n C 3 71 LEU 71 232 232 LEU LEU C . n C 3 72 ALA 72 233 233 ALA ALA C . n C 3 73 ARG 73 234 234 ARG ARG C . n C 3 74 ALA 74 235 235 ALA ALA C . n C 3 75 LEU 75 236 236 LEU LEU C . n C 3 76 ARG 76 237 237 ARG ARG C . n C 3 77 ASN 77 238 238 ASN ASN C . n C 3 78 TYR 78 239 239 TYR TYR C . n C 3 79 ALA 79 240 240 ALA ALA C . n C 3 80 LYS 80 241 241 LYS LYS C . n C 3 81 THR 81 242 242 THR THR C . n C 3 82 GLY 82 243 243 GLY GLY C . n C 3 83 GLU 83 244 244 GLU GLU C . n C 3 84 ILE 84 245 245 ILE ILE C . n C 3 85 ARG 85 246 246 ARG ARG C . n C 3 86 LYS 86 247 247 LYS LYS C . n C 3 87 VAL 87 248 248 VAL VAL C . n C 3 88 LYS 88 249 249 LYS LYS C . n C 3 89 ARG 89 250 250 ARG ARG C . n C 3 90 LYS 90 251 251 LYS LYS C . n C 3 91 LEU 91 252 252 LEU LEU C . n C 3 92 THR 92 253 253 THR THR C . n C 3 93 TYR 93 254 254 TYR TYR C . n C 3 94 GLN 94 255 255 GLN GLN C . n C 3 95 PHE 95 256 256 PHE PHE C . n C 3 96 ASP 96 257 257 ASP ASP C . n C 3 97 SER 97 258 258 SER SER C . n C 3 98 ALA 98 259 259 ALA ALA C . n C 3 99 LEU 99 260 260 LEU LEU C . n C 3 100 LEU 100 261 261 LEU LEU C . n C 3 101 PRO 101 262 262 PRO PRO C . n C 3 102 ALA 102 263 263 ALA ALA C . n C 3 103 SER 103 264 ? ? ? C . n C 3 104 ARG 104 265 ? ? ? C . n C 3 105 HIS 105 266 ? ? ? C . n C 3 106 VAL 106 267 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 3D1 1 101 1 3D1 3D1 A . E 5 THM 1 101 1 THM THM B . F 6 PG4 1 102 1 PG4 PG4 B . G 7 HOH 1 201 28 HOH HOH A . G 7 HOH 2 202 10 HOH HOH A . G 7 HOH 3 203 43 HOH HOH A . G 7 HOH 4 204 39 HOH HOH A . G 7 HOH 5 205 29 HOH HOH A . G 7 HOH 6 206 21 HOH HOH A . G 7 HOH 7 207 33 HOH HOH A . G 7 HOH 8 208 34 HOH HOH A . H 7 HOH 1 201 12 HOH HOH B . H 7 HOH 2 202 25 HOH HOH B . H 7 HOH 3 203 22 HOH HOH B . H 7 HOH 4 204 9 HOH HOH B . H 7 HOH 5 205 17 HOH HOH B . H 7 HOH 6 206 35 HOH HOH B . H 7 HOH 7 207 15 HOH HOH B . H 7 HOH 8 208 40 HOH HOH B . H 7 HOH 9 209 14 HOH HOH B . H 7 HOH 10 210 4 HOH HOH B . H 7 HOH 11 211 18 HOH HOH B . H 7 HOH 12 212 13 HOH HOH B . H 7 HOH 13 213 27 HOH HOH B . H 7 HOH 14 214 44 HOH HOH B . I 7 HOH 1 301 19 HOH HOH C . I 7 HOH 2 302 1 HOH HOH C . I 7 HOH 3 303 7 HOH HOH C . I 7 HOH 4 304 8 HOH HOH C . I 7 HOH 5 305 3 HOH HOH C . I 7 HOH 6 306 5 HOH HOH C . I 7 HOH 7 307 31 HOH HOH C . I 7 HOH 8 308 6 HOH HOH C . I 7 HOH 9 309 30 HOH HOH C . I 7 HOH 10 310 23 HOH HOH C . I 7 HOH 11 311 2 HOH HOH C . I 7 HOH 12 312 16 HOH HOH C . I 7 HOH 13 313 20 HOH HOH C . I 7 HOH 14 314 24 HOH HOH C . I 7 HOH 15 315 37 HOH HOH C . I 7 HOH 16 316 41 HOH HOH C . I 7 HOH 17 317 36 HOH HOH C . I 7 HOH 18 318 26 HOH HOH C . I 7 HOH 19 319 11 HOH HOH C . I 7 HOH 20 320 45 HOH HOH C . I 7 HOH 21 321 46 HOH HOH C . I 7 HOH 22 322 38 HOH HOH C . I 7 HOH 23 323 47 HOH HOH C . I 7 HOH 24 324 42 HOH HOH C . I 7 HOH 25 325 32 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9J1O _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.200 _cell.length_a_esd ? _cell.length_b 54.870 _cell.length_b_esd ? _cell.length_c 100.790 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9J1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9J1O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M MES pH5.6, 7.6% PEG8000, 8.0% Ethylene Glycol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-13 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9J1O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.23 _reflns.d_resolution_low 100 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9454 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.17 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.06 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.23 _reflns_shell.d_res_low 2.29 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4418 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.42 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.841 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.741 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9J1O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.23 _refine.ls_d_res_low 37.12 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9454 _refine.ls_number_reflns_R_free 465 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.58 _refine.ls_percent_reflns_R_free 4.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2301 _refine.ls_R_factor_R_free 0.2751 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2276 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 36.39 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 792 _refine_hist.pdbx_number_atoms_nucleic_acid 615 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1502 _refine_hist.d_res_high 2.23 _refine_hist.d_res_low 37.12 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1548 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.867 ? 2208 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 24.853 ? 654 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 235 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 166 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.23 2.55 . . 151 2950 100.00 . . . . 0.2563 . . . . . . . . . . . 0.3381 'X-RAY DIFFRACTION' 2.55 3.22 . . 145 2965 100.00 . . . . 0.2650 . . . . . . . . . . . 0.3047 'X-RAY DIFFRACTION' 3.22 37.12 . . 169 3074 99.00 . . . . 0.2085 . . . . . . . . . . . 0.2554 # _struct.entry_id 9J1O _struct.title 'Mouse Spi-B Ets domain in complex with DNA containing GGAA sequence' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9J1O _struct_keywords.text 'DNA binding, Transcription, Immune system, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9J1O 9J1O ? 1 ? 1 2 PDB 9J1O 9J1O ? 2 ? 1 3 UNP SPIB_MOUSE O35906 ? 3 ;GSEGRGSEAGARKKLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNY AKTGEIRKVKRKLTYQFDSALLPASRHV ; 160 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9J1O A 1 ? 15 ? 9J1O 2 ? 16 ? 2 16 2 2 9J1O B 1 ? 15 ? 9J1O 2 ? 16 ? 2 16 3 3 9J1O C 1 ? 106 ? O35906 160 ? 267 ? 162 267 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 9J1O ? C ? ? UNP O35906 GLU 162 deletion ? 1 3 9J1O ? C ? ? UNP O35906 GLY 163 deletion ? 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4230 ? 1 MORE -21 ? 1 'SSA (A^2)' 10570 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG C 14 ? GLY C 26 ? ARG C 175 GLY C 187 1 ? 13 HELX_P HELX_P2 AA2 PRO C 37 ? ALA C 39 ? PRO C 198 ALA C 200 5 ? 3 HELX_P HELX_P3 AA3 HIS C 48 ? GLY C 61 ? HIS C 209 GLY C 222 1 ? 14 HELX_P HELX_P4 AA4 THR C 67 ? ASN C 77 ? THR C 228 ASN C 238 1 ? 11 HELX_P HELX_P5 AA5 ASN C 77 ? GLY C 82 ? ASN C 238 GLY C 243 1 ? 6 HELX_P HELX_P6 AA6 SER C 97 ? LEU C 100 ? SER C 258 LEU C 261 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DT 1 P ? ? ? 1_555 D 3D1 . "O3'" ? ? A DT 2 A 3D1 101 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale one ? B DC 1 P ? ? ? 1_555 E THM . "O3'" ? ? B DC 2 B THM 101 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 2 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 2 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 4 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 4 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 5 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 5 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 6 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 6 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 7 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 7 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 10 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 10 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 10 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 11 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 11 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 12 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 12 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 13 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 13 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 14 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 14 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 15 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 15 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 15 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 16 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 16 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 16 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL C 32 ? GLU C 36 ? VAL C 193 GLU C 197 AA1 2 VAL C 41 ? PHE C 44 ? VAL C 202 PHE C 205 AA1 3 THR C 92 ? PHE C 95 ? THR C 253 PHE C 256 AA1 4 ILE C 84 ? LYS C 86 ? ILE C 245 LYS C 247 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL C 35 ? N VAL C 196 O VAL C 41 ? O VAL C 202 AA1 2 3 N PHE C 42 ? N PHE C 203 O TYR C 93 ? O TYR C 254 AA1 3 4 O GLN C 94 ? O GLN C 255 N ARG C 85 ? N ARG C 246 # _pdbx_entry_details.entry_id 9J1O _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.376 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.043 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.55 108.30 2.25 0.30 N 2 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 110.41 108.30 2.11 0.30 N 3 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 110.52 108.30 2.22 0.30 N # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -11.355 1.886 13.849 0.5944 0.9095 0.3023 -0.0436 0.0793 -0.0910 1.3618 0.3568 3.9789 0.4338 -2.0569 -0.4246 0.3416 0.1857 -0.4981 -0.1398 0.3463 0.0371 -0.0668 -0.2725 0.1773 'X-RAY DIFFRACTION' 2 ? refined -11.942 0.567 11.333 0.5320 1.0827 0.2163 0.0649 0.0480 -0.0454 1.3387 1.1607 6.7236 0.4347 -2.3140 0.3100 0.3996 0.6140 -0.1628 -0.4450 1.2748 -0.1682 0.3886 -0.4355 0.1561 'X-RAY DIFFRACTION' 3 ? refined -1.391 -10.298 10.017 0.3372 0.7088 0.1577 0.0014 -0.0256 -0.0436 1.2439 3.2215 0.9301 -0.3261 0.2233 0.0124 -0.0436 0.0347 -0.0156 -0.3089 0.0834 -0.1846 0.3219 0.0131 0.0379 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 16 '( CHAIN A AND RESID 2:16 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 2 B 16 '( CHAIN B AND RESID 2:16 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 169 C 263 '( CHAIN C AND RESID 169:263 )' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY 162 ? C GLY 1 2 1 Y 1 C SER 163 ? C SER 2 3 1 Y 1 C ARG 164 ? C ARG 3 4 1 Y 1 C GLY 165 ? C GLY 4 5 1 Y 1 C SER 166 ? C SER 5 6 1 Y 1 C GLU 167 ? C GLU 6 7 1 Y 1 C ALA 168 ? C ALA 7 8 1 Y 1 C SER 264 ? C SER 103 9 1 Y 1 C ARG 265 ? C ARG 104 10 1 Y 1 C HIS 266 ? C HIS 105 11 1 Y 1 C VAL 267 ? C VAL 106 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3D1 "O5'" O N N 1 3D1 "C5'" C N N 2 3D1 "C4'" C N R 3 3D1 "O4'" O N N 4 3D1 "C1'" C N R 5 3D1 N9 N Y N 6 3D1 C4 C Y N 7 3D1 N3 N Y N 8 3D1 C2 C Y N 9 3D1 N1 N Y N 10 3D1 C6 C Y N 11 3D1 N6 N N N 12 3D1 C5 C Y N 13 3D1 N7 N Y N 14 3D1 C8 C Y N 15 3D1 "C2'" C N N 16 3D1 "C3'" C N S 17 3D1 "O3'" O N N 18 3D1 "H5'" H N N 19 3D1 "H5'1" H N N 20 3D1 "H5'2" H N N 21 3D1 "H4'" H N N 22 3D1 "H1'" H N N 23 3D1 H2 H N N 24 3D1 HN61 H N N 25 3D1 HN62 H N N 26 3D1 H8 H N N 27 3D1 "H2'1" H N N 28 3D1 "H2'2" H N N 29 3D1 "H3'" H N N 30 3D1 H1 H N N 31 ALA N N N N 32 ALA CA C N S 33 ALA C C N N 34 ALA O O N N 35 ALA CB C N N 36 ALA OXT O N N 37 ALA H H N N 38 ALA H2 H N N 39 ALA HA H N N 40 ALA HB1 H N N 41 ALA HB2 H N N 42 ALA HB3 H N N 43 ALA HXT H N N 44 ARG N N N N 45 ARG CA C N S 46 ARG C C N N 47 ARG O O N N 48 ARG CB C N N 49 ARG CG C N N 50 ARG CD C N N 51 ARG NE N N N 52 ARG CZ C N N 53 ARG NH1 N N N 54 ARG NH2 N N N 55 ARG OXT O N N 56 ARG H H N N 57 ARG H2 H N N 58 ARG HA H N N 59 ARG HB2 H N N 60 ARG HB3 H N N 61 ARG HG2 H N N 62 ARG HG3 H N N 63 ARG HD2 H N N 64 ARG HD3 H N N 65 ARG HE H N N 66 ARG HH11 H N N 67 ARG HH12 H N N 68 ARG HH21 H N N 69 ARG HH22 H N N 70 ARG HXT H N N 71 ASN N N N N 72 ASN CA C N S 73 ASN C C N N 74 ASN O O N N 75 ASN CB C N N 76 ASN CG C N N 77 ASN OD1 O N N 78 ASN ND2 N N N 79 ASN OXT O N N 80 ASN H H N N 81 ASN H2 H N N 82 ASN HA H N N 83 ASN HB2 H N N 84 ASN HB3 H N N 85 ASN HD21 H N N 86 ASN HD22 H N N 87 ASN HXT H N N 88 ASP N N N N 89 ASP CA C N S 90 ASP C C N N 91 ASP O O N N 92 ASP CB C N N 93 ASP CG C N N 94 ASP OD1 O N N 95 ASP OD2 O N N 96 ASP OXT O N N 97 ASP H H N N 98 ASP H2 H N N 99 ASP HA H N N 100 ASP HB2 H N N 101 ASP HB3 H N N 102 ASP HD2 H N N 103 ASP HXT H N N 104 CYS N N N N 105 CYS CA C N R 106 CYS C C N N 107 CYS O O N N 108 CYS CB C N N 109 CYS SG S N N 110 CYS OXT O N N 111 CYS H H N N 112 CYS H2 H N N 113 CYS HA H N N 114 CYS HB2 H N N 115 CYS HB3 H N N 116 CYS HG H N N 117 CYS HXT H N N 118 DA OP3 O N N 119 DA P P N N 120 DA OP1 O N N 121 DA OP2 O N N 122 DA "O5'" O N N 123 DA "C5'" C N N 124 DA "C4'" C N R 125 DA "O4'" O N N 126 DA "C3'" C N S 127 DA "O3'" O N N 128 DA "C2'" C N N 129 DA "C1'" C N R 130 DA N9 N Y N 131 DA C8 C Y N 132 DA N7 N Y N 133 DA C5 C Y N 134 DA C6 C Y N 135 DA N6 N N N 136 DA N1 N Y N 137 DA C2 C Y N 138 DA N3 N Y N 139 DA C4 C Y N 140 DA HOP3 H N N 141 DA HOP2 H N N 142 DA "H5'" H N N 143 DA "H5''" H N N 144 DA "H4'" H N N 145 DA "H3'" H N N 146 DA "HO3'" H N N 147 DA "H2'" H N N 148 DA "H2''" H N N 149 DA "H1'" H N N 150 DA H8 H N N 151 DA H61 H N N 152 DA H62 H N N 153 DA H2 H N N 154 DC OP3 O N N 155 DC P P N N 156 DC OP1 O N N 157 DC OP2 O N N 158 DC "O5'" O N N 159 DC "C5'" C N N 160 DC "C4'" C N R 161 DC "O4'" O N N 162 DC "C3'" C N S 163 DC "O3'" O N N 164 DC "C2'" C N N 165 DC "C1'" C N R 166 DC N1 N N N 167 DC C2 C N N 168 DC O2 O N N 169 DC N3 N N N 170 DC C4 C N N 171 DC N4 N N N 172 DC C5 C N N 173 DC C6 C N N 174 DC HOP3 H N N 175 DC HOP2 H N N 176 DC "H5'" H N N 177 DC "H5''" H N N 178 DC "H4'" H N N 179 DC "H3'" H N N 180 DC "HO3'" H N N 181 DC "H2'" H N N 182 DC "H2''" H N N 183 DC "H1'" H N N 184 DC H41 H N N 185 DC H42 H N N 186 DC H5 H N N 187 DC H6 H N N 188 DG OP3 O N N 189 DG P P N N 190 DG OP1 O N N 191 DG OP2 O N N 192 DG "O5'" O N N 193 DG "C5'" C N N 194 DG "C4'" C N R 195 DG "O4'" O N N 196 DG "C3'" C N S 197 DG "O3'" O N N 198 DG "C2'" C N N 199 DG "C1'" C N R 200 DG N9 N Y N 201 DG C8 C Y N 202 DG N7 N Y N 203 DG C5 C Y N 204 DG C6 C N N 205 DG O6 O N N 206 DG N1 N N N 207 DG C2 C N N 208 DG N2 N N N 209 DG N3 N N N 210 DG C4 C Y N 211 DG HOP3 H N N 212 DG HOP2 H N N 213 DG "H5'" H N N 214 DG "H5''" H N N 215 DG "H4'" H N N 216 DG "H3'" H N N 217 DG "HO3'" H N N 218 DG "H2'" H N N 219 DG "H2''" H N N 220 DG "H1'" H N N 221 DG H8 H N N 222 DG H1 H N N 223 DG H21 H N N 224 DG H22 H N N 225 DT OP3 O N N 226 DT P P N N 227 DT OP1 O N N 228 DT OP2 O N N 229 DT "O5'" O N N 230 DT "C5'" C N N 231 DT "C4'" C N R 232 DT "O4'" O N N 233 DT "C3'" C N S 234 DT "O3'" O N N 235 DT "C2'" C N N 236 DT "C1'" C N R 237 DT N1 N N N 238 DT C2 C N N 239 DT O2 O N N 240 DT N3 N N N 241 DT C4 C N N 242 DT O4 O N N 243 DT C5 C N N 244 DT C7 C N N 245 DT C6 C N N 246 DT HOP3 H N N 247 DT HOP2 H N N 248 DT "H5'" H N N 249 DT "H5''" H N N 250 DT "H4'" H N N 251 DT "H3'" H N N 252 DT "HO3'" H N N 253 DT "H2'" H N N 254 DT "H2''" H N N 255 DT "H1'" H N N 256 DT H3 H N N 257 DT H71 H N N 258 DT H72 H N N 259 DT H73 H N N 260 DT H6 H N N 261 GLN N N N N 262 GLN CA C N S 263 GLN C C N N 264 GLN O O N N 265 GLN CB C N N 266 GLN CG C N N 267 GLN CD C N N 268 GLN OE1 O N N 269 GLN NE2 N N N 270 GLN OXT O N N 271 GLN H H N N 272 GLN H2 H N N 273 GLN HA H N N 274 GLN HB2 H N N 275 GLN HB3 H N N 276 GLN HG2 H N N 277 GLN HG3 H N N 278 GLN HE21 H N N 279 GLN HE22 H N N 280 GLN HXT H N N 281 GLU N N N N 282 GLU CA C N S 283 GLU C C N N 284 GLU O O N N 285 GLU CB C N N 286 GLU CG C N N 287 GLU CD C N N 288 GLU OE1 O N N 289 GLU OE2 O N N 290 GLU OXT O N N 291 GLU H H N N 292 GLU H2 H N N 293 GLU HA H N N 294 GLU HB2 H N N 295 GLU HB3 H N N 296 GLU HG2 H N N 297 GLU HG3 H N N 298 GLU HE2 H N N 299 GLU HXT H N N 300 GLY N N N N 301 GLY CA C N N 302 GLY C C N N 303 GLY O O N N 304 GLY OXT O N N 305 GLY H H N N 306 GLY H2 H N N 307 GLY HA2 H N N 308 GLY HA3 H N N 309 GLY HXT H N N 310 HIS N N N N 311 HIS CA C N S 312 HIS C C N N 313 HIS O O N N 314 HIS CB C N N 315 HIS CG C Y N 316 HIS ND1 N Y N 317 HIS CD2 C Y N 318 HIS CE1 C Y N 319 HIS NE2 N Y N 320 HIS OXT O N N 321 HIS H H N N 322 HIS H2 H N N 323 HIS HA H N N 324 HIS HB2 H N N 325 HIS HB3 H N N 326 HIS HD1 H N N 327 HIS HD2 H N N 328 HIS HE1 H N N 329 HIS HE2 H N N 330 HIS HXT H N N 331 HOH O O N N 332 HOH H1 H N N 333 HOH H2 H N N 334 ILE N N N N 335 ILE CA C N S 336 ILE C C N N 337 ILE O O N N 338 ILE CB C N S 339 ILE CG1 C N N 340 ILE CG2 C N N 341 ILE CD1 C N N 342 ILE OXT O N N 343 ILE H H N N 344 ILE H2 H N N 345 ILE HA H N N 346 ILE HB H N N 347 ILE HG12 H N N 348 ILE HG13 H N N 349 ILE HG21 H N N 350 ILE HG22 H N N 351 ILE HG23 H N N 352 ILE HD11 H N N 353 ILE HD12 H N N 354 ILE HD13 H N N 355 ILE HXT H N N 356 LEU N N N N 357 LEU CA C N S 358 LEU C C N N 359 LEU O O N N 360 LEU CB C N N 361 LEU CG C N N 362 LEU CD1 C N N 363 LEU CD2 C N N 364 LEU OXT O N N 365 LEU H H N N 366 LEU H2 H N N 367 LEU HA H N N 368 LEU HB2 H N N 369 LEU HB3 H N N 370 LEU HG H N N 371 LEU HD11 H N N 372 LEU HD12 H N N 373 LEU HD13 H N N 374 LEU HD21 H N N 375 LEU HD22 H N N 376 LEU HD23 H N N 377 LEU HXT H N N 378 LYS N N N N 379 LYS CA C N S 380 LYS C C N N 381 LYS O O N N 382 LYS CB C N N 383 LYS CG C N N 384 LYS CD C N N 385 LYS CE C N N 386 LYS NZ N N N 387 LYS OXT O N N 388 LYS H H N N 389 LYS H2 H N N 390 LYS HA H N N 391 LYS HB2 H N N 392 LYS HB3 H N N 393 LYS HG2 H N N 394 LYS HG3 H N N 395 LYS HD2 H N N 396 LYS HD3 H N N 397 LYS HE2 H N N 398 LYS HE3 H N N 399 LYS HZ1 H N N 400 LYS HZ2 H N N 401 LYS HZ3 H N N 402 LYS HXT H N N 403 MET N N N N 404 MET CA C N S 405 MET C C N N 406 MET O O N N 407 MET CB C N N 408 MET CG C N N 409 MET SD S N N 410 MET CE C N N 411 MET OXT O N N 412 MET H H N N 413 MET H2 H N N 414 MET HA H N N 415 MET HB2 H N N 416 MET HB3 H N N 417 MET HG2 H N N 418 MET HG3 H N N 419 MET HE1 H N N 420 MET HE2 H N N 421 MET HE3 H N N 422 MET HXT H N N 423 PG4 O1 O N N 424 PG4 C1 C N N 425 PG4 C2 C N N 426 PG4 O2 O N N 427 PG4 C3 C N N 428 PG4 C4 C N N 429 PG4 O3 O N N 430 PG4 C5 C N N 431 PG4 C6 C N N 432 PG4 O4 O N N 433 PG4 C7 C N N 434 PG4 C8 C N N 435 PG4 O5 O N N 436 PG4 HO1 H N N 437 PG4 H11 H N N 438 PG4 H12 H N N 439 PG4 H21 H N N 440 PG4 H22 H N N 441 PG4 H31 H N N 442 PG4 H32 H N N 443 PG4 H41 H N N 444 PG4 H42 H N N 445 PG4 H51 H N N 446 PG4 H52 H N N 447 PG4 H61 H N N 448 PG4 H62 H N N 449 PG4 H71 H N N 450 PG4 H72 H N N 451 PG4 H81 H N N 452 PG4 H82 H N N 453 PG4 HO5 H N N 454 PHE N N N N 455 PHE CA C N S 456 PHE C C N N 457 PHE O O N N 458 PHE CB C N N 459 PHE CG C Y N 460 PHE CD1 C Y N 461 PHE CD2 C Y N 462 PHE CE1 C Y N 463 PHE CE2 C Y N 464 PHE CZ C Y N 465 PHE OXT O N N 466 PHE H H N N 467 PHE H2 H N N 468 PHE HA H N N 469 PHE HB2 H N N 470 PHE HB3 H N N 471 PHE HD1 H N N 472 PHE HD2 H N N 473 PHE HE1 H N N 474 PHE HE2 H N N 475 PHE HZ H N N 476 PHE HXT H N N 477 PRO N N N N 478 PRO CA C N S 479 PRO C C N N 480 PRO O O N N 481 PRO CB C N N 482 PRO CG C N N 483 PRO CD C N N 484 PRO OXT O N N 485 PRO H H N N 486 PRO HA H N N 487 PRO HB2 H N N 488 PRO HB3 H N N 489 PRO HG2 H N N 490 PRO HG3 H N N 491 PRO HD2 H N N 492 PRO HD3 H N N 493 PRO HXT H N N 494 SER N N N N 495 SER CA C N S 496 SER C C N N 497 SER O O N N 498 SER CB C N N 499 SER OG O N N 500 SER OXT O N N 501 SER H H N N 502 SER H2 H N N 503 SER HA H N N 504 SER HB2 H N N 505 SER HB3 H N N 506 SER HG H N N 507 SER HXT H N N 508 THM "O5'" O N N 509 THM "C5'" C N N 510 THM "C4'" C N R 511 THM "O4'" O N N 512 THM "C3'" C N S 513 THM "O3'" O N N 514 THM "C2'" C N N 515 THM "C1'" C N R 516 THM N1 N N N 517 THM C2 C N N 518 THM O2 O N N 519 THM N3 N N N 520 THM C4 C N N 521 THM O4 O N N 522 THM C5 C N N 523 THM C5M C N N 524 THM C6 C N N 525 THM "HO5'" H N N 526 THM "H5'1" H N N 527 THM "H5'2" H N N 528 THM "H4'" H N N 529 THM "H3'" H N N 530 THM "HO3'" H N N 531 THM "H2'1" H N N 532 THM "H2'2" H N N 533 THM "H1'" H N N 534 THM HN3 H N N 535 THM HM51 H N N 536 THM HM52 H N N 537 THM HM53 H N N 538 THM H6 H N N 539 THR N N N N 540 THR CA C N S 541 THR C C N N 542 THR O O N N 543 THR CB C N R 544 THR OG1 O N N 545 THR CG2 C N N 546 THR OXT O N N 547 THR H H N N 548 THR H2 H N N 549 THR HA H N N 550 THR HB H N N 551 THR HG1 H N N 552 THR HG21 H N N 553 THR HG22 H N N 554 THR HG23 H N N 555 THR HXT H N N 556 TRP N N N N 557 TRP CA C N S 558 TRP C C N N 559 TRP O O N N 560 TRP CB C N N 561 TRP CG C Y N 562 TRP CD1 C Y N 563 TRP CD2 C Y N 564 TRP NE1 N Y N 565 TRP CE2 C Y N 566 TRP CE3 C Y N 567 TRP CZ2 C Y N 568 TRP CZ3 C Y N 569 TRP CH2 C Y N 570 TRP OXT O N N 571 TRP H H N N 572 TRP H2 H N N 573 TRP HA H N N 574 TRP HB2 H N N 575 TRP HB3 H N N 576 TRP HD1 H N N 577 TRP HE1 H N N 578 TRP HE3 H N N 579 TRP HZ2 H N N 580 TRP HZ3 H N N 581 TRP HH2 H N N 582 TRP HXT H N N 583 TYR N N N N 584 TYR CA C N S 585 TYR C C N N 586 TYR O O N N 587 TYR CB C N N 588 TYR CG C Y N 589 TYR CD1 C Y N 590 TYR CD2 C Y N 591 TYR CE1 C Y N 592 TYR CE2 C Y N 593 TYR CZ C Y N 594 TYR OH O N N 595 TYR OXT O N N 596 TYR H H N N 597 TYR H2 H N N 598 TYR HA H N N 599 TYR HB2 H N N 600 TYR HB3 H N N 601 TYR HD1 H N N 602 TYR HD2 H N N 603 TYR HE1 H N N 604 TYR HE2 H N N 605 TYR HH H N N 606 TYR HXT H N N 607 VAL N N N N 608 VAL CA C N S 609 VAL C C N N 610 VAL O O N N 611 VAL CB C N N 612 VAL CG1 C N N 613 VAL CG2 C N N 614 VAL OXT O N N 615 VAL H H N N 616 VAL H2 H N N 617 VAL HA H N N 618 VAL HB H N N 619 VAL HG11 H N N 620 VAL HG12 H N N 621 VAL HG13 H N N 622 VAL HG21 H N N 623 VAL HG22 H N N 624 VAL HG23 H N N 625 VAL HXT H N N 626 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3D1 "O5'" "C5'" sing N N 1 3D1 "O5'" "H5'" sing N N 2 3D1 "C5'" "C4'" sing N N 3 3D1 "C5'" "H5'1" sing N N 4 3D1 "C5'" "H5'2" sing N N 5 3D1 "C4'" "O4'" sing N N 6 3D1 "C4'" "C3'" sing N N 7 3D1 "C4'" "H4'" sing N N 8 3D1 "O4'" "C1'" sing N N 9 3D1 "C1'" N9 sing N N 10 3D1 "C1'" "C2'" sing N N 11 3D1 "C1'" "H1'" sing N N 12 3D1 N9 C4 sing Y N 13 3D1 N9 C8 sing Y N 14 3D1 C4 N3 doub Y N 15 3D1 C4 C5 sing Y N 16 3D1 N3 C2 sing Y N 17 3D1 C2 N1 doub Y N 18 3D1 C2 H2 sing N N 19 3D1 N1 C6 sing Y N 20 3D1 C6 N6 sing N N 21 3D1 C6 C5 doub Y N 22 3D1 N6 HN61 sing N N 23 3D1 N6 HN62 sing N N 24 3D1 C5 N7 sing Y N 25 3D1 N7 C8 doub Y N 26 3D1 C8 H8 sing N N 27 3D1 "C2'" "C3'" sing N N 28 3D1 "C2'" "H2'1" sing N N 29 3D1 "C2'" "H2'2" sing N N 30 3D1 "C3'" "O3'" sing N N 31 3D1 "C3'" "H3'" sing N N 32 3D1 "O3'" H1 sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 ARG N CA sing N N 46 ARG N H sing N N 47 ARG N H2 sing N N 48 ARG CA C sing N N 49 ARG CA CB sing N N 50 ARG CA HA sing N N 51 ARG C O doub N N 52 ARG C OXT sing N N 53 ARG CB CG sing N N 54 ARG CB HB2 sing N N 55 ARG CB HB3 sing N N 56 ARG CG CD sing N N 57 ARG CG HG2 sing N N 58 ARG CG HG3 sing N N 59 ARG CD NE sing N N 60 ARG CD HD2 sing N N 61 ARG CD HD3 sing N N 62 ARG NE CZ sing N N 63 ARG NE HE sing N N 64 ARG CZ NH1 sing N N 65 ARG CZ NH2 doub N N 66 ARG NH1 HH11 sing N N 67 ARG NH1 HH12 sing N N 68 ARG NH2 HH21 sing N N 69 ARG NH2 HH22 sing N N 70 ARG OXT HXT sing N N 71 ASN N CA sing N N 72 ASN N H sing N N 73 ASN N H2 sing N N 74 ASN CA C sing N N 75 ASN CA CB sing N N 76 ASN CA HA sing N N 77 ASN C O doub N N 78 ASN C OXT sing N N 79 ASN CB CG sing N N 80 ASN CB HB2 sing N N 81 ASN CB HB3 sing N N 82 ASN CG OD1 doub N N 83 ASN CG ND2 sing N N 84 ASN ND2 HD21 sing N N 85 ASN ND2 HD22 sing N N 86 ASN OXT HXT sing N N 87 ASP N CA sing N N 88 ASP N H sing N N 89 ASP N H2 sing N N 90 ASP CA C sing N N 91 ASP CA CB sing N N 92 ASP CA HA sing N N 93 ASP C O doub N N 94 ASP C OXT sing N N 95 ASP CB CG sing N N 96 ASP CB HB2 sing N N 97 ASP CB HB3 sing N N 98 ASP CG OD1 doub N N 99 ASP CG OD2 sing N N 100 ASP OD2 HD2 sing N N 101 ASP OXT HXT sing N N 102 CYS N CA sing N N 103 CYS N H sing N N 104 CYS N H2 sing N N 105 CYS CA C sing N N 106 CYS CA CB sing N N 107 CYS CA HA sing N N 108 CYS C O doub N N 109 CYS C OXT sing N N 110 CYS CB SG sing N N 111 CYS CB HB2 sing N N 112 CYS CB HB3 sing N N 113 CYS SG HG sing N N 114 CYS OXT HXT sing N N 115 DA OP3 P sing N N 116 DA OP3 HOP3 sing N N 117 DA P OP1 doub N N 118 DA P OP2 sing N N 119 DA P "O5'" sing N N 120 DA OP2 HOP2 sing N N 121 DA "O5'" "C5'" sing N N 122 DA "C5'" "C4'" sing N N 123 DA "C5'" "H5'" sing N N 124 DA "C5'" "H5''" sing N N 125 DA "C4'" "O4'" sing N N 126 DA "C4'" "C3'" sing N N 127 DA "C4'" "H4'" sing N N 128 DA "O4'" "C1'" sing N N 129 DA "C3'" "O3'" sing N N 130 DA "C3'" "C2'" sing N N 131 DA "C3'" "H3'" sing N N 132 DA "O3'" "HO3'" sing N N 133 DA "C2'" "C1'" sing N N 134 DA "C2'" "H2'" sing N N 135 DA "C2'" "H2''" sing N N 136 DA "C1'" N9 sing N N 137 DA "C1'" "H1'" sing N N 138 DA N9 C8 sing Y N 139 DA N9 C4 sing Y N 140 DA C8 N7 doub Y N 141 DA C8 H8 sing N N 142 DA N7 C5 sing Y N 143 DA C5 C6 sing Y N 144 DA C5 C4 doub Y N 145 DA C6 N6 sing N N 146 DA C6 N1 doub Y N 147 DA N6 H61 sing N N 148 DA N6 H62 sing N N 149 DA N1 C2 sing Y N 150 DA C2 N3 doub Y N 151 DA C2 H2 sing N N 152 DA N3 C4 sing Y N 153 DC OP3 P sing N N 154 DC OP3 HOP3 sing N N 155 DC P OP1 doub N N 156 DC P OP2 sing N N 157 DC P "O5'" sing N N 158 DC OP2 HOP2 sing N N 159 DC "O5'" "C5'" sing N N 160 DC "C5'" "C4'" sing N N 161 DC "C5'" "H5'" sing N N 162 DC "C5'" "H5''" sing N N 163 DC "C4'" "O4'" sing N N 164 DC "C4'" "C3'" sing N N 165 DC "C4'" "H4'" sing N N 166 DC "O4'" "C1'" sing N N 167 DC "C3'" "O3'" sing N N 168 DC "C3'" "C2'" sing N N 169 DC "C3'" "H3'" sing N N 170 DC "O3'" "HO3'" sing N N 171 DC "C2'" "C1'" sing N N 172 DC "C2'" "H2'" sing N N 173 DC "C2'" "H2''" sing N N 174 DC "C1'" N1 sing N N 175 DC "C1'" "H1'" sing N N 176 DC N1 C2 sing N N 177 DC N1 C6 sing N N 178 DC C2 O2 doub N N 179 DC C2 N3 sing N N 180 DC N3 C4 doub N N 181 DC C4 N4 sing N N 182 DC C4 C5 sing N N 183 DC N4 H41 sing N N 184 DC N4 H42 sing N N 185 DC C5 C6 doub N N 186 DC C5 H5 sing N N 187 DC C6 H6 sing N N 188 DG OP3 P sing N N 189 DG OP3 HOP3 sing N N 190 DG P OP1 doub N N 191 DG P OP2 sing N N 192 DG P "O5'" sing N N 193 DG OP2 HOP2 sing N N 194 DG "O5'" "C5'" sing N N 195 DG "C5'" "C4'" sing N N 196 DG "C5'" "H5'" sing N N 197 DG "C5'" "H5''" sing N N 198 DG "C4'" "O4'" sing N N 199 DG "C4'" "C3'" sing N N 200 DG "C4'" "H4'" sing N N 201 DG "O4'" "C1'" sing N N 202 DG "C3'" "O3'" sing N N 203 DG "C3'" "C2'" sing N N 204 DG "C3'" "H3'" sing N N 205 DG "O3'" "HO3'" sing N N 206 DG "C2'" "C1'" sing N N 207 DG "C2'" "H2'" sing N N 208 DG "C2'" "H2''" sing N N 209 DG "C1'" N9 sing N N 210 DG "C1'" "H1'" sing N N 211 DG N9 C8 sing Y N 212 DG N9 C4 sing Y N 213 DG C8 N7 doub Y N 214 DG C8 H8 sing N N 215 DG N7 C5 sing Y N 216 DG C5 C6 sing N N 217 DG C5 C4 doub Y N 218 DG C6 O6 doub N N 219 DG C6 N1 sing N N 220 DG N1 C2 sing N N 221 DG N1 H1 sing N N 222 DG C2 N2 sing N N 223 DG C2 N3 doub N N 224 DG N2 H21 sing N N 225 DG N2 H22 sing N N 226 DG N3 C4 sing N N 227 DT OP3 P sing N N 228 DT OP3 HOP3 sing N N 229 DT P OP1 doub N N 230 DT P OP2 sing N N 231 DT P "O5'" sing N N 232 DT OP2 HOP2 sing N N 233 DT "O5'" "C5'" sing N N 234 DT "C5'" "C4'" sing N N 235 DT "C5'" "H5'" sing N N 236 DT "C5'" "H5''" sing N N 237 DT "C4'" "O4'" sing N N 238 DT "C4'" "C3'" sing N N 239 DT "C4'" "H4'" sing N N 240 DT "O4'" "C1'" sing N N 241 DT "C3'" "O3'" sing N N 242 DT "C3'" "C2'" sing N N 243 DT "C3'" "H3'" sing N N 244 DT "O3'" "HO3'" sing N N 245 DT "C2'" "C1'" sing N N 246 DT "C2'" "H2'" sing N N 247 DT "C2'" "H2''" sing N N 248 DT "C1'" N1 sing N N 249 DT "C1'" "H1'" sing N N 250 DT N1 C2 sing N N 251 DT N1 C6 sing N N 252 DT C2 O2 doub N N 253 DT C2 N3 sing N N 254 DT N3 C4 sing N N 255 DT N3 H3 sing N N 256 DT C4 O4 doub N N 257 DT C4 C5 sing N N 258 DT C5 C7 sing N N 259 DT C5 C6 doub N N 260 DT C7 H71 sing N N 261 DT C7 H72 sing N N 262 DT C7 H73 sing N N 263 DT C6 H6 sing N N 264 GLN N CA sing N N 265 GLN N H sing N N 266 GLN N H2 sing N N 267 GLN CA C sing N N 268 GLN CA CB sing N N 269 GLN CA HA sing N N 270 GLN C O doub N N 271 GLN C OXT sing N N 272 GLN CB CG sing N N 273 GLN CB HB2 sing N N 274 GLN CB HB3 sing N N 275 GLN CG CD sing N N 276 GLN CG HG2 sing N N 277 GLN CG HG3 sing N N 278 GLN CD OE1 doub N N 279 GLN CD NE2 sing N N 280 GLN NE2 HE21 sing N N 281 GLN NE2 HE22 sing N N 282 GLN OXT HXT sing N N 283 GLU N CA sing N N 284 GLU N H sing N N 285 GLU N H2 sing N N 286 GLU CA C sing N N 287 GLU CA CB sing N N 288 GLU CA HA sing N N 289 GLU C O doub N N 290 GLU C OXT sing N N 291 GLU CB CG sing N N 292 GLU CB HB2 sing N N 293 GLU CB HB3 sing N N 294 GLU CG CD sing N N 295 GLU CG HG2 sing N N 296 GLU CG HG3 sing N N 297 GLU CD OE1 doub N N 298 GLU CD OE2 sing N N 299 GLU OE2 HE2 sing N N 300 GLU OXT HXT sing N N 301 GLY N CA sing N N 302 GLY N H sing N N 303 GLY N H2 sing N N 304 GLY CA C sing N N 305 GLY CA HA2 sing N N 306 GLY CA HA3 sing N N 307 GLY C O doub N N 308 GLY C OXT sing N N 309 GLY OXT HXT sing N N 310 HIS N CA sing N N 311 HIS N H sing N N 312 HIS N H2 sing N N 313 HIS CA C sing N N 314 HIS CA CB sing N N 315 HIS CA HA sing N N 316 HIS C O doub N N 317 HIS C OXT sing N N 318 HIS CB CG sing N N 319 HIS CB HB2 sing N N 320 HIS CB HB3 sing N N 321 HIS CG ND1 sing Y N 322 HIS CG CD2 doub Y N 323 HIS ND1 CE1 doub Y N 324 HIS ND1 HD1 sing N N 325 HIS CD2 NE2 sing Y N 326 HIS CD2 HD2 sing N N 327 HIS CE1 NE2 sing Y N 328 HIS CE1 HE1 sing N N 329 HIS NE2 HE2 sing N N 330 HIS OXT HXT sing N N 331 HOH O H1 sing N N 332 HOH O H2 sing N N 333 ILE N CA sing N N 334 ILE N H sing N N 335 ILE N H2 sing N N 336 ILE CA C sing N N 337 ILE CA CB sing N N 338 ILE CA HA sing N N 339 ILE C O doub N N 340 ILE C OXT sing N N 341 ILE CB CG1 sing N N 342 ILE CB CG2 sing N N 343 ILE CB HB sing N N 344 ILE CG1 CD1 sing N N 345 ILE CG1 HG12 sing N N 346 ILE CG1 HG13 sing N N 347 ILE CG2 HG21 sing N N 348 ILE CG2 HG22 sing N N 349 ILE CG2 HG23 sing N N 350 ILE CD1 HD11 sing N N 351 ILE CD1 HD12 sing N N 352 ILE CD1 HD13 sing N N 353 ILE OXT HXT sing N N 354 LEU N CA sing N N 355 LEU N H sing N N 356 LEU N H2 sing N N 357 LEU CA C sing N N 358 LEU CA CB sing N N 359 LEU CA HA sing N N 360 LEU C O doub N N 361 LEU C OXT sing N N 362 LEU CB CG sing N N 363 LEU CB HB2 sing N N 364 LEU CB HB3 sing N N 365 LEU CG CD1 sing N N 366 LEU CG CD2 sing N N 367 LEU CG HG sing N N 368 LEU CD1 HD11 sing N N 369 LEU CD1 HD12 sing N N 370 LEU CD1 HD13 sing N N 371 LEU CD2 HD21 sing N N 372 LEU CD2 HD22 sing N N 373 LEU CD2 HD23 sing N N 374 LEU OXT HXT sing N N 375 LYS N CA sing N N 376 LYS N H sing N N 377 LYS N H2 sing N N 378 LYS CA C sing N N 379 LYS CA CB sing N N 380 LYS CA HA sing N N 381 LYS C O doub N N 382 LYS C OXT sing N N 383 LYS CB CG sing N N 384 LYS CB HB2 sing N N 385 LYS CB HB3 sing N N 386 LYS CG CD sing N N 387 LYS CG HG2 sing N N 388 LYS CG HG3 sing N N 389 LYS CD CE sing N N 390 LYS CD HD2 sing N N 391 LYS CD HD3 sing N N 392 LYS CE NZ sing N N 393 LYS CE HE2 sing N N 394 LYS CE HE3 sing N N 395 LYS NZ HZ1 sing N N 396 LYS NZ HZ2 sing N N 397 LYS NZ HZ3 sing N N 398 LYS OXT HXT sing N N 399 MET N CA sing N N 400 MET N H sing N N 401 MET N H2 sing N N 402 MET CA C sing N N 403 MET CA CB sing N N 404 MET CA HA sing N N 405 MET C O doub N N 406 MET C OXT sing N N 407 MET CB CG sing N N 408 MET CB HB2 sing N N 409 MET CB HB3 sing N N 410 MET CG SD sing N N 411 MET CG HG2 sing N N 412 MET CG HG3 sing N N 413 MET SD CE sing N N 414 MET CE HE1 sing N N 415 MET CE HE2 sing N N 416 MET CE HE3 sing N N 417 MET OXT HXT sing N N 418 PG4 O1 C1 sing N N 419 PG4 O1 HO1 sing N N 420 PG4 C1 C2 sing N N 421 PG4 C1 H11 sing N N 422 PG4 C1 H12 sing N N 423 PG4 C2 O2 sing N N 424 PG4 C2 H21 sing N N 425 PG4 C2 H22 sing N N 426 PG4 O2 C3 sing N N 427 PG4 C3 C4 sing N N 428 PG4 C3 H31 sing N N 429 PG4 C3 H32 sing N N 430 PG4 C4 O3 sing N N 431 PG4 C4 H41 sing N N 432 PG4 C4 H42 sing N N 433 PG4 O3 C5 sing N N 434 PG4 C5 C6 sing N N 435 PG4 C5 H51 sing N N 436 PG4 C5 H52 sing N N 437 PG4 C6 O4 sing N N 438 PG4 C6 H61 sing N N 439 PG4 C6 H62 sing N N 440 PG4 O4 C7 sing N N 441 PG4 C7 C8 sing N N 442 PG4 C7 H71 sing N N 443 PG4 C7 H72 sing N N 444 PG4 C8 O5 sing N N 445 PG4 C8 H81 sing N N 446 PG4 C8 H82 sing N N 447 PG4 O5 HO5 sing N N 448 PHE N CA sing N N 449 PHE N H sing N N 450 PHE N H2 sing N N 451 PHE CA C sing N N 452 PHE CA CB sing N N 453 PHE CA HA sing N N 454 PHE C O doub N N 455 PHE C OXT sing N N 456 PHE CB CG sing N N 457 PHE CB HB2 sing N N 458 PHE CB HB3 sing N N 459 PHE CG CD1 doub Y N 460 PHE CG CD2 sing Y N 461 PHE CD1 CE1 sing Y N 462 PHE CD1 HD1 sing N N 463 PHE CD2 CE2 doub Y N 464 PHE CD2 HD2 sing N N 465 PHE CE1 CZ doub Y N 466 PHE CE1 HE1 sing N N 467 PHE CE2 CZ sing Y N 468 PHE CE2 HE2 sing N N 469 PHE CZ HZ sing N N 470 PHE OXT HXT sing N N 471 PRO N CA sing N N 472 PRO N CD sing N N 473 PRO N H sing N N 474 PRO CA C sing N N 475 PRO CA CB sing N N 476 PRO CA HA sing N N 477 PRO C O doub N N 478 PRO C OXT sing N N 479 PRO CB CG sing N N 480 PRO CB HB2 sing N N 481 PRO CB HB3 sing N N 482 PRO CG CD sing N N 483 PRO CG HG2 sing N N 484 PRO CG HG3 sing N N 485 PRO CD HD2 sing N N 486 PRO CD HD3 sing N N 487 PRO OXT HXT sing N N 488 SER N CA sing N N 489 SER N H sing N N 490 SER N H2 sing N N 491 SER CA C sing N N 492 SER CA CB sing N N 493 SER CA HA sing N N 494 SER C O doub N N 495 SER C OXT sing N N 496 SER CB OG sing N N 497 SER CB HB2 sing N N 498 SER CB HB3 sing N N 499 SER OG HG sing N N 500 SER OXT HXT sing N N 501 THM "O5'" "C5'" sing N N 502 THM "O5'" "HO5'" sing N N 503 THM "C5'" "C4'" sing N N 504 THM "C5'" "H5'1" sing N N 505 THM "C5'" "H5'2" sing N N 506 THM "C4'" "O4'" sing N N 507 THM "C4'" "C3'" sing N N 508 THM "C4'" "H4'" sing N N 509 THM "O4'" "C1'" sing N N 510 THM "C3'" "O3'" sing N N 511 THM "C3'" "C2'" sing N N 512 THM "C3'" "H3'" sing N N 513 THM "O3'" "HO3'" sing N N 514 THM "C2'" "C1'" sing N N 515 THM "C2'" "H2'1" sing N N 516 THM "C2'" "H2'2" sing N N 517 THM "C1'" N1 sing N N 518 THM "C1'" "H1'" sing N N 519 THM N1 C2 sing N N 520 THM N1 C6 sing N N 521 THM C2 O2 doub N N 522 THM C2 N3 sing N N 523 THM N3 C4 sing N N 524 THM N3 HN3 sing N N 525 THM C4 O4 doub N N 526 THM C4 C5 sing N N 527 THM C5 C5M sing N N 528 THM C5 C6 doub N N 529 THM C5M HM51 sing N N 530 THM C5M HM52 sing N N 531 THM C5M HM53 sing N N 532 THM C6 H6 sing N N 533 THR N CA sing N N 534 THR N H sing N N 535 THR N H2 sing N N 536 THR CA C sing N N 537 THR CA CB sing N N 538 THR CA HA sing N N 539 THR C O doub N N 540 THR C OXT sing N N 541 THR CB OG1 sing N N 542 THR CB CG2 sing N N 543 THR CB HB sing N N 544 THR OG1 HG1 sing N N 545 THR CG2 HG21 sing N N 546 THR CG2 HG22 sing N N 547 THR CG2 HG23 sing N N 548 THR OXT HXT sing N N 549 TRP N CA sing N N 550 TRP N H sing N N 551 TRP N H2 sing N N 552 TRP CA C sing N N 553 TRP CA CB sing N N 554 TRP CA HA sing N N 555 TRP C O doub N N 556 TRP C OXT sing N N 557 TRP CB CG sing N N 558 TRP CB HB2 sing N N 559 TRP CB HB3 sing N N 560 TRP CG CD1 doub Y N 561 TRP CG CD2 sing Y N 562 TRP CD1 NE1 sing Y N 563 TRP CD1 HD1 sing N N 564 TRP CD2 CE2 doub Y N 565 TRP CD2 CE3 sing Y N 566 TRP NE1 CE2 sing Y N 567 TRP NE1 HE1 sing N N 568 TRP CE2 CZ2 sing Y N 569 TRP CE3 CZ3 doub Y N 570 TRP CE3 HE3 sing N N 571 TRP CZ2 CH2 doub Y N 572 TRP CZ2 HZ2 sing N N 573 TRP CZ3 CH2 sing Y N 574 TRP CZ3 HZ3 sing N N 575 TRP CH2 HH2 sing N N 576 TRP OXT HXT sing N N 577 TYR N CA sing N N 578 TYR N H sing N N 579 TYR N H2 sing N N 580 TYR CA C sing N N 581 TYR CA CB sing N N 582 TYR CA HA sing N N 583 TYR C O doub N N 584 TYR C OXT sing N N 585 TYR CB CG sing N N 586 TYR CB HB2 sing N N 587 TYR CB HB3 sing N N 588 TYR CG CD1 doub Y N 589 TYR CG CD2 sing Y N 590 TYR CD1 CE1 sing Y N 591 TYR CD1 HD1 sing N N 592 TYR CD2 CE2 doub Y N 593 TYR CD2 HD2 sing N N 594 TYR CE1 CZ doub Y N 595 TYR CE1 HE1 sing N N 596 TYR CE2 CZ sing Y N 597 TYR CE2 HE2 sing N N 598 TYR CZ OH sing N N 599 TYR OH HH sing N N 600 TYR OXT HXT sing N N 601 VAL N CA sing N N 602 VAL N H sing N N 603 VAL N H2 sing N N 604 VAL CA C sing N N 605 VAL CA CB sing N N 606 VAL CA HA sing N N 607 VAL C O doub N N 608 VAL C OXT sing N N 609 VAL CB CG1 sing N N 610 VAL CB CG2 sing N N 611 VAL CB HB sing N N 612 VAL CG1 HG11 sing N N 613 VAL CG1 HG12 sing N N 614 VAL CG1 HG13 sing N N 615 VAL CG2 HG21 sing N N 616 VAL CG2 HG22 sing N N 617 VAL CG2 HG23 sing N N 618 VAL OXT HXT sing N N 619 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9J1O 'double helix' 9J1O 'a-form double helix' 9J1O 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 15 1_555 0.057 -0.238 0.159 3.619 -6.063 3.696 1 A_DT2:DA16_B A 2 ? B 16 ? 20 1 1 A DG 2 1_555 B DC 14 1_555 -0.378 -0.378 -0.260 1.664 -6.260 -2.595 2 A_DG3:DC15_B A 3 ? B 15 ? 19 1 1 A DA 3 1_555 B DT 13 1_555 0.034 -0.270 0.104 9.118 -19.375 -4.026 3 A_DA4:DT14_B A 4 ? B 14 ? 20 1 1 A DA 4 1_555 B DT 12 1_555 0.109 -0.234 0.147 6.054 -17.564 3.413 4 A_DA5:DT13_B A 5 ? B 13 ? 20 1 1 A DA 5 1_555 B DT 11 1_555 0.344 -0.232 0.347 6.486 -7.159 -1.762 5 A_DA6:DT12_B A 6 ? B 12 ? 20 1 1 A DA 6 1_555 B DT 10 1_555 0.380 -0.188 0.165 2.577 -16.508 9.494 6 A_DA7:DT11_B A 7 ? B 11 ? 20 1 1 A DG 7 1_555 B DC 9 1_555 -0.280 -0.168 0.385 -2.262 -7.229 4.155 7 A_DG8:DC10_B A 8 ? B 10 ? 19 1 1 A DG 8 1_555 B DC 8 1_555 -0.742 -0.317 0.554 -5.854 -13.113 7.816 8 A_DG9:DC9_B A 9 ? B 9 ? 19 1 1 A DG 9 1_555 B DC 7 1_555 -0.202 -0.308 -0.010 6.301 3.884 -0.802 9 A_DG10:DC8_B A 10 ? B 8 ? 19 1 1 A DA 10 1_555 B DT 6 1_555 0.525 -0.257 0.157 13.214 -7.123 5.502 10 A_DA11:DT7_B A 11 ? B 7 ? 20 1 1 A DA 11 1_555 B DT 5 1_555 0.441 -0.118 0.466 10.080 -21.718 1.143 11 A_DA12:DT6_B A 12 ? B 6 ? 20 1 1 A DT 12 1_555 B DA 4 1_555 -0.396 -0.389 0.171 3.445 -19.776 -1.941 12 A_DT13:DA5_B A 13 ? B 5 ? 20 1 1 A DT 13 1_555 B DA 3 1_555 -0.070 -0.316 0.038 5.254 -11.078 3.396 13 A_DT14:DA4_B A 14 ? B 4 ? 20 1 1 A DG 14 1_555 B DC 2 1_555 -0.054 -0.395 0.231 2.729 -22.444 -1.698 14 A_DG15:DC3_B A 15 ? B 3 ? 19 1 1 A DG 15 1_555 B DC 1 1_555 -0.262 -0.152 -0.257 -3.453 -0.379 3.929 15 A_DG16:DC2_B A 16 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 15 1_555 A DG 2 1_555 B DC 14 1_555 0.077 2.036 3.437 3.997 -5.722 40.852 3.497 0.322 3.130 -8.126 -5.676 41.419 1 AA_DT2DG3:DC15DA16_BB A 2 ? B 16 ? A 3 ? B 15 ? 1 A DG 2 1_555 B DC 14 1_555 A DA 3 1_555 B DT 13 1_555 -1.000 0.752 3.182 -7.524 0.408 37.633 1.094 0.578 3.321 0.625 11.523 38.353 2 AA_DG3DA4:DT14DC15_BB A 3 ? B 15 ? A 4 ? B 14 ? 1 A DA 3 1_555 B DT 13 1_555 A DA 4 1_555 B DT 12 1_555 0.460 -0.561 3.367 -0.340 -2.110 33.432 -0.615 -0.856 3.390 -3.664 0.590 33.498 3 AA_DA4DA5:DT13DT14_BB A 4 ? B 14 ? A 5 ? B 13 ? 1 A DA 4 1_555 B DT 12 1_555 A DA 5 1_555 B DT 11 1_555 0.154 -0.537 3.139 -4.219 -0.735 35.650 -0.770 -0.829 3.111 -1.195 6.861 35.898 4 AA_DA5DA6:DT12DT13_BB A 5 ? B 13 ? A 6 ? B 12 ? 1 A DA 5 1_555 B DT 11 1_555 A DA 6 1_555 B DT 10 1_555 0.709 -0.669 3.411 0.395 6.081 32.520 -2.230 -1.176 3.245 10.742 -0.698 33.071 5 AA_DA6DA7:DT11DT12_BB A 6 ? B 12 ? A 7 ? B 11 ? 1 A DA 6 1_555 B DT 10 1_555 A DG 7 1_555 B DC 9 1_555 0.039 -1.468 3.370 -2.666 4.242 26.995 -4.134 -0.736 3.090 8.990 5.650 27.447 6 AA_DA7DG8:DC10DT11_BB A 7 ? B 11 ? A 8 ? B 10 ? 1 A DG 7 1_555 B DC 9 1_555 A DG 8 1_555 B DC 8 1_555 0.553 -1.651 3.239 2.727 4.560 28.781 -4.215 -0.528 2.986 9.076 -5.427 29.257 7 AA_DG8DG9:DC9DC10_BB A 8 ? B 10 ? A 9 ? B 9 ? 1 A DG 8 1_555 B DC 8 1_555 A DG 9 1_555 B DC 7 1_555 -1.342 -0.398 3.095 2.089 4.645 35.195 -1.280 2.481 2.938 7.632 -3.433 35.550 8 AA_DG9DG10:DC8DC9_BB A 9 ? B 9 ? A 10 ? B 8 ? 1 A DG 9 1_555 B DC 7 1_555 A DA 10 1_555 B DT 6 1_555 0.307 -0.435 3.035 0.823 8.467 27.928 -2.545 -0.446 2.793 17.050 -1.657 29.170 9 AA_DG10DA11:DT7DC8_BB A 10 ? B 8 ? A 11 ? B 7 ? 1 A DA 10 1_555 B DT 6 1_555 A DA 11 1_555 B DT 5 1_555 -0.831 0.173 3.421 -3.185 -1.418 36.443 0.481 0.860 3.470 -2.262 5.078 36.604 10 AA_DA11DA12:DT6DT7_BB A 11 ? B 7 ? A 12 ? B 6 ? 1 A DA 11 1_555 B DT 5 1_555 A DT 12 1_555 B DA 4 1_555 0.388 -1.211 3.327 0.511 -0.900 33.788 -1.933 -0.584 3.362 -1.548 -0.878 33.803 11 AA_DA12DT13:DA5DT6_BB A 12 ? B 6 ? A 13 ? B 5 ? 1 A DT 12 1_555 B DA 4 1_555 A DT 13 1_555 B DA 3 1_555 -0.462 -0.290 3.290 1.603 6.591 27.812 -2.070 1.296 3.109 13.460 -3.274 28.611 12 AA_DT13DT14:DA4DA5_BB A 13 ? B 5 ? A 14 ? B 4 ? 1 A DT 13 1_555 B DA 3 1_555 A DG 14 1_555 B DC 2 1_555 -1.328 1.233 3.402 -5.170 5.150 38.672 1.165 1.303 3.671 7.693 7.723 39.329 13 AA_DT14DG15:DC3DA4_BB A 14 ? B 4 ? A 15 ? B 3 ? 1 A DG 14 1_555 B DC 2 1_555 A DG 15 1_555 B DC 1 1_555 1.469 0.663 3.563 3.281 -2.593 34.708 1.536 -1.899 3.625 -4.327 -5.475 34.951 14 AA_DG15DG16:DC2DC3_BB A 15 ? B 3 ? A 16 ? B 2 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PUE _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9J1O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.030120 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018225 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009922 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ # loop_ #