HEADER HYDROLASE 06-AUG-24 9J1Z TITLE CRYSTAL STRUCTURE OF NME1CAS9 HNH DOMAIN BOUND TO ANTI-CRISPR TITLE 2 ACRIIC1NME1ST COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: HNH DOMAIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACRIIC1NME1ST; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP C (STRAIN SOURCE 3 8013); SOURCE 4 ORGANISM_TAXID: 604162; SOURCE 5 GENE: CAS9, NMV_1993; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BACTERIOPHAGE SP.; SOURCE 10 ORGANISM_TAXID: 38018; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NME1CAS9, ANTI-CRISPR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIAO,Z.WANG REVDAT 1 04-MAR-26 9J1Z 0 JRNL AUTH Y.XIAO,Z.WANG JRNL TITL CRYSTAL STRUCTURE OF NMECAS9 HNH DOMAIN BOUND TO ANTI-CRISPR JRNL TITL 2 ACRIIC1NME1ST JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19_4092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 32129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9500 - 4.3700 0.99 2602 154 0.1787 0.2011 REMARK 3 2 4.3700 - 3.4700 0.99 2596 166 0.1601 0.2029 REMARK 3 3 3.4700 - 3.0300 0.99 2592 151 0.1858 0.2129 REMARK 3 4 3.0300 - 2.7600 0.99 2623 125 0.1966 0.2246 REMARK 3 5 2.7600 - 2.5600 0.98 2592 120 0.1972 0.2251 REMARK 3 6 2.5600 - 2.4100 0.98 2581 140 0.1910 0.2194 REMARK 3 7 2.4100 - 2.2900 0.98 2558 151 0.1749 0.2369 REMARK 3 8 2.2900 - 2.1900 0.97 2565 135 0.1814 0.2269 REMARK 3 9 2.1900 - 2.1000 0.97 2611 117 0.1839 0.2147 REMARK 3 10 2.1000 - 2.0300 0.96 2585 132 0.1812 0.2161 REMARK 3 11 2.0300 - 1.9700 0.96 2477 137 0.1928 0.2537 REMARK 3 12 1.9700 - 1.9100 0.80 2122 97 0.2005 0.2696 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3481 REMARK 3 ANGLE : 0.631 4694 REMARK 3 CHIRALITY : 0.044 495 REMARK 3 PLANARITY : 0.010 608 REMARK 3 DIHEDRAL : 4.586 479 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8920 -26.3659 -24.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.2046 REMARK 3 T33: 0.2679 T12: -0.0808 REMARK 3 T13: 0.0042 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0304 REMARK 3 L33: 0.0011 L12: -0.0203 REMARK 3 L13: -0.0029 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: -0.0317 S13: -0.0806 REMARK 3 S21: -0.1864 S22: 0.0223 S23: -0.1433 REMARK 3 S31: -0.0018 S32: -0.0180 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4652 -21.0820 -12.3025 REMARK 3 T TENSOR REMARK 3 T11: -0.0882 T22: 0.0829 REMARK 3 T33: 0.1444 T12: -0.0615 REMARK 3 T13: -0.0361 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.1591 L22: 0.2937 REMARK 3 L33: 0.1455 L12: 0.0084 REMARK 3 L13: 0.0708 L23: -0.1782 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.0482 S13: 0.0215 REMARK 3 S21: -0.0339 S22: 0.1925 S23: 0.2812 REMARK 3 S31: -0.0680 S32: -0.1541 S33: 0.3007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4582 -13.3136 -10.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0416 REMARK 3 T33: 0.0256 T12: -0.0151 REMARK 3 T13: 0.0023 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 0.0512 REMARK 3 L33: 0.5098 L12: -0.0857 REMARK 3 L13: -0.1037 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0656 S13: 0.0232 REMARK 3 S21: 0.0316 S22: -0.0164 S23: -0.0087 REMARK 3 S31: -0.1324 S32: -0.0137 S33: 0.0090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8858 -14.4724 -14.2132 REMARK 3 T TENSOR REMARK 3 T11: -0.0467 T22: 0.0904 REMARK 3 T33: 0.1676 T12: -0.0399 REMARK 3 T13: -0.0336 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.3430 L22: 0.2864 REMARK 3 L33: 0.3548 L12: 0.0295 REMARK 3 L13: 0.0925 L23: -0.2651 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: -0.0000 S13: 0.2271 REMARK 3 S21: -0.0614 S22: -0.1024 S23: -0.3078 REMARK 3 S31: -0.0039 S32: 0.2159 S33: -0.3522 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8884 1.0559 -11.0632 REMARK 3 T TENSOR REMARK 3 T11: 0.1112 T22: 0.0689 REMARK 3 T33: 0.0739 T12: 0.0151 REMARK 3 T13: -0.0007 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0701 L22: 0.0352 REMARK 3 L33: 0.0629 L12: 0.0062 REMARK 3 L13: -0.0213 L23: -0.0383 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0497 S13: 0.1013 REMARK 3 S21: 0.0964 S22: 0.0999 S23: 0.1095 REMARK 3 S31: -0.1158 S32: -0.0873 S33: 0.0054 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 39 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5071 -7.0283 -28.0324 REMARK 3 T TENSOR REMARK 3 T11: 0.3938 T22: 0.4888 REMARK 3 T33: 0.4046 T12: 0.1484 REMARK 3 T13: 0.0017 T23: -0.0783 REMARK 3 L TENSOR REMARK 3 L11: 0.0018 L22: -0.0002 REMARK 3 L33: 0.0033 L12: 0.0029 REMARK 3 L13: 0.0000 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.0047 S13: -0.0183 REMARK 3 S21: -0.0027 S22: -0.0367 S23: -0.0641 REMARK 3 S31: 0.0819 S32: -0.0000 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 55 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9194 2.4824 -20.5845 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.4663 REMARK 3 T33: 0.2006 T12: 0.1024 REMARK 3 T13: -0.1197 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 0.0424 L22: 0.1004 REMARK 3 L33: 0.0516 L12: -0.0068 REMARK 3 L13: -0.0047 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0243 S13: -0.0054 REMARK 3 S21: -0.0748 S22: 0.0395 S23: 0.0980 REMARK 3 S31: 0.0401 S32: -0.0036 S33: 0.0675 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1161 3.8106 -15.3687 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.0530 REMARK 3 T33: 0.0637 T12: 0.0236 REMARK 3 T13: 0.0204 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0220 L22: 0.0389 REMARK 3 L33: 0.0306 L12: 0.0292 REMARK 3 L13: 0.0275 L23: 0.0293 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.0068 S13: 0.0862 REMARK 3 S21: 0.0224 S22: 0.0465 S23: -0.0544 REMARK 3 S31: -0.1683 S32: -0.0688 S33: 0.0579 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6641 -11.6161 -43.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2782 REMARK 3 T33: 0.2313 T12: -0.0276 REMARK 3 T13: -0.0747 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.0015 REMARK 3 L33: 0.0129 L12: 0.0093 REMARK 3 L13: 0.0162 L23: 0.0040 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: 0.0439 S13: 0.0237 REMARK 3 S21: 0.0547 S22: 0.0183 S23: 0.0096 REMARK 3 S31: -0.0283 S32: -0.0362 S33: -0.0129 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1617 -9.4414 -45.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0349 REMARK 3 T33: 0.0314 T12: 0.0029 REMARK 3 T13: -0.0059 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1165 L22: 0.2331 REMARK 3 L33: 0.2857 L12: -0.1169 REMARK 3 L13: -0.0759 L23: -0.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.0233 S13: -0.0216 REMARK 3 S21: -0.1407 S22: -0.0025 S23: 0.0250 REMARK 3 S31: 0.2296 S32: 0.0598 S33: 0.0497 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9864 -0.0954 -35.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.0642 T22: 0.0695 REMARK 3 T33: 0.0788 T12: -0.0330 REMARK 3 T13: -0.0395 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 0.2277 REMARK 3 L33: 0.0227 L12: -0.0149 REMARK 3 L13: 0.0204 L23: -0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.1441 S13: 0.0739 REMARK 3 S21: 0.2489 S22: 0.0097 S23: -0.0461 REMARK 3 S31: -0.0925 S32: 0.0303 S33: -0.0957 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5696 -24.2189 -44.8476 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.0446 REMARK 3 T33: 0.1600 T12: 0.0173 REMARK 3 T13: 0.0480 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1447 L22: 0.0231 REMARK 3 L33: 0.1979 L12: -0.0092 REMARK 3 L13: 0.0491 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0385 S13: -0.0687 REMARK 3 S21: -0.1570 S22: 0.0564 S23: -0.1679 REMARK 3 S31: 0.0721 S32: 0.0211 S33: 0.0418 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 38 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7908 -27.3814 -34.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.5673 REMARK 3 T33: 0.5767 T12: -0.1003 REMARK 3 T13: 0.2251 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: 0.0049 REMARK 3 L33: 0.0088 L12: -0.0007 REMARK 3 L13: -0.0018 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0683 S13: 0.0777 REMARK 3 S21: 0.0039 S22: 0.0511 S23: 0.0621 REMARK 3 S31: -0.0666 S32: -0.0263 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 62 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0921 -30.4698 -42.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: -0.1343 REMARK 3 T33: 0.1238 T12: 0.0660 REMARK 3 T13: 0.0939 T23: -0.0852 REMARK 3 L TENSOR REMARK 3 L11: 0.0140 L22: 0.1496 REMARK 3 L33: 0.0432 L12: 0.0067 REMARK 3 L13: 0.0000 L23: -0.0549 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.0074 S13: -0.1353 REMARK 3 S21: 0.0599 S22: -0.0019 S23: 0.0216 REMARK 3 S31: 0.1921 S32: 0.0159 S33: -0.0991 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9J1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.0, 10% W/V POLYETHYLENE GLYCOL 6,000, BATCH MODE, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLN B 138 REMARK 465 LEU B 139 REMARK 465 GLU B 140 REMARK 465 ARG B 141 REMARK 465 PRO B 142 REMARK 465 HIS B 143 REMARK 465 ARG B 144 REMARK 465 ASP B 145 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 TYR C 43 REMARK 465 ASP C 44 REMARK 465 GLU C 45 REMARK 465 ASN C 46 REMARK 465 PHE C 47 REMARK 465 GLU C 92 REMARK 465 HIS C 93 REMARK 465 HIS C 94 REMARK 465 HIS C 95 REMARK 465 HIS C 96 REMARK 465 HIS C 97 REMARK 465 HIS C 98 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 138 REMARK 465 LEU A 139 REMARK 465 GLU A 140 REMARK 465 ARG A 141 REMARK 465 PRO A 142 REMARK 465 HIS A 143 REMARK 465 ARG A 144 REMARK 465 ASP A 145 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 TYR D 43 REMARK 465 ASP D 44 REMARK 465 GLU D 45 REMARK 465 ASN D 46 REMARK 465 PHE D 47 REMARK 465 GLU D 92 REMARK 465 HIS D 93 REMARK 465 HIS D 94 REMARK 465 HIS D 95 REMARK 465 HIS D 96 REMARK 465 HIS D 97 REMARK 465 HIS D 98 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 12 CG OD1 OD2 REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 GLU C 28 CG CD OE1 OE2 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ASP A 12 CG OD1 OD2 REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 26 CG CD OE1 OE2 REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 ASP D 54 CG OD1 OD2 REMARK 470 GLU D 70 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 99 32.16 -90.63 REMARK 500 ARG B 126 49.94 -92.09 REMARK 500 ASP C 15 41.57 -142.51 REMARK 500 SER C 83 125.88 -170.50 REMARK 500 ASN A 99 30.11 -88.48 REMARK 500 ARG A 126 39.65 -94.72 REMARK 500 ASP D 15 46.20 -147.39 REMARK 500 SER D 83 122.05 -170.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 137 DISTANCE = 6.04 ANGSTROMS DBREF 9J1Z B 1 138 UNP C9X1G5 CAS9_NEIM8 518 655 DBREF 9J1Z C 1 98 PDB 9J1Z 9J1Z 1 98 DBREF 9J1Z A 1 138 UNP C9X1G5 CAS9_NEIM8 518 655 DBREF 9J1Z D 1 98 PDB 9J1Z 9J1Z 1 98 SEQADV 9J1Z GLY B -4 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z PRO B -3 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z LEU B -2 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z GLY B -1 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z SER B 0 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z LEU B 139 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z GLU B 140 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ARG B 141 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z PRO B 142 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z HIS B 143 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ARG B 144 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ASP B 145 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z GLY A -4 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z PRO A -3 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z LEU A -2 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z GLY A -1 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z SER A 0 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z LEU A 139 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z GLU A 140 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ARG A 141 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z PRO A 142 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z HIS A 143 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ARG A 144 UNP C9X1G5 EXPRESSION TAG SEQADV 9J1Z ASP A 145 UNP C9X1G5 EXPRESSION TAG SEQRES 1 B 150 GLY PRO LEU GLY SER GLU ILE GLU LYS ARG GLN GLU GLU SEQRES 2 B 150 ASN ARG LYS ASP ARG GLU LYS ALA ALA ALA LYS PHE ARG SEQRES 3 B 150 GLU TYR PHE PRO ASN PHE VAL GLY GLU PRO LYS SER LYS SEQRES 4 B 150 ASP ILE LEU LYS LEU ARG LEU TYR GLU GLN GLN HIS GLY SEQRES 5 B 150 LYS CYS LEU TYR SER GLY LYS GLU ILE ASN LEU GLY ARG SEQRES 6 B 150 LEU ASN GLU LYS GLY TYR VAL GLU ILE ASP HIS ALA LEU SEQRES 7 B 150 PRO PHE SER ARG THR TRP ASP ASP SER PHE ASN ASN LYS SEQRES 8 B 150 VAL LEU VAL LEU GLY SER GLU ASN GLN ASN LYS GLY ASN SEQRES 9 B 150 GLN THR PRO TYR GLU TYR PHE ASN GLY LYS ASP ASN SER SEQRES 10 B 150 ARG GLU TRP GLN GLU PHE LYS ALA ARG VAL GLU THR SER SEQRES 11 B 150 ARG PHE PRO ARG SER LYS LYS GLN ARG ILE LEU LEU GLN SEQRES 12 B 150 LEU GLU ARG PRO HIS ARG ASP SEQRES 1 C 98 MET ALA ASN LYS THR TYR LYS ILE GLY LYS ASN ALA GLY SEQRES 2 C 98 TYR ASP GLY CYS GLY LEU CYS LEU ALA ALA ILE SER GLU SEQRES 3 C 98 ASN GLU ALA ILE LYS VAL LYS TYR LEU ARG ASP ILE GLY SEQRES 4 C 98 ILE GLU GLU TYR ASP GLU ASN PHE ASP GLY LEU GLU ALA SEQRES 5 C 98 GLU ASP TRP LEU ARG TRP GLY THR ASP SER ARG VAL LYS SEQRES 6 C 98 ALA ALA ALA LEU GLU MET GLU GLN TYR ALA TYR THR SER SEQRES 7 C 98 VAL GLY MET ALA SER CYS TRP GLU PHE VAL GLU LEU LEU SEQRES 8 C 98 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 150 GLY PRO LEU GLY SER GLU ILE GLU LYS ARG GLN GLU GLU SEQRES 2 A 150 ASN ARG LYS ASP ARG GLU LYS ALA ALA ALA LYS PHE ARG SEQRES 3 A 150 GLU TYR PHE PRO ASN PHE VAL GLY GLU PRO LYS SER LYS SEQRES 4 A 150 ASP ILE LEU LYS LEU ARG LEU TYR GLU GLN GLN HIS GLY SEQRES 5 A 150 LYS CYS LEU TYR SER GLY LYS GLU ILE ASN LEU GLY ARG SEQRES 6 A 150 LEU ASN GLU LYS GLY TYR VAL GLU ILE ASP HIS ALA LEU SEQRES 7 A 150 PRO PHE SER ARG THR TRP ASP ASP SER PHE ASN ASN LYS SEQRES 8 A 150 VAL LEU VAL LEU GLY SER GLU ASN GLN ASN LYS GLY ASN SEQRES 9 A 150 GLN THR PRO TYR GLU TYR PHE ASN GLY LYS ASP ASN SER SEQRES 10 A 150 ARG GLU TRP GLN GLU PHE LYS ALA ARG VAL GLU THR SER SEQRES 11 A 150 ARG PHE PRO ARG SER LYS LYS GLN ARG ILE LEU LEU GLN SEQRES 12 A 150 LEU GLU ARG PRO HIS ARG ASP SEQRES 1 D 98 MET ALA ASN LYS THR TYR LYS ILE GLY LYS ASN ALA GLY SEQRES 2 D 98 TYR ASP GLY CYS GLY LEU CYS LEU ALA ALA ILE SER GLU SEQRES 3 D 98 ASN GLU ALA ILE LYS VAL LYS TYR LEU ARG ASP ILE GLY SEQRES 4 D 98 ILE GLU GLU TYR ASP GLU ASN PHE ASP GLY LEU GLU ALA SEQRES 5 D 98 GLU ASP TRP LEU ARG TRP GLY THR ASP SER ARG VAL LYS SEQRES 6 D 98 ALA ALA ALA LEU GLU MET GLU GLN TYR ALA TYR THR SER SEQRES 7 D 98 VAL GLY MET ALA SER CYS TRP GLU PHE VAL GLU LEU LEU SEQRES 8 D 98 GLU HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *271(H2 O) HELIX 1 AA1 GLU B 1 PHE B 24 1 24 HELIX 2 AA2 LYS B 32 GLN B 45 1 14 HELIX 3 AA3 ASN B 57 LEU B 61 5 5 HELIX 4 AA4 PRO B 74 TRP B 79 1 6 HELIX 5 AA5 SER B 82 ASN B 84 5 3 HELIX 6 AA6 GLY B 91 GLY B 98 1 8 HELIX 7 AA7 THR B 101 PHE B 106 1 6 HELIX 8 AA8 ASN B 107 ASN B 111 5 5 HELIX 9 AA9 SER B 112 THR B 124 1 13 HELIX 10 AB1 PRO B 128 LEU B 136 1 9 HELIX 11 AB2 ARG C 36 GLY C 39 5 4 HELIX 12 AB3 TRP C 55 THR C 60 1 6 HELIX 13 AB4 ASP C 61 GLN C 73 1 13 HELIX 14 AB5 ILE A 2 PHE A 24 1 23 HELIX 15 AB6 LYS A 32 GLN A 45 1 14 HELIX 16 AB7 ASN A 57 LEU A 61 5 5 HELIX 17 AB8 PRO A 74 TRP A 79 1 6 HELIX 18 AB9 SER A 82 ASN A 84 5 3 HELIX 19 AC1 GLY A 91 GLY A 98 1 8 HELIX 20 AC2 THR A 101 PHE A 106 1 6 HELIX 21 AC3 ASN A 107 ASN A 111 5 5 HELIX 22 AC4 SER A 112 SER A 125 1 14 HELIX 23 AC5 PRO A 128 LEU A 136 1 9 HELIX 24 AC6 ARG D 36 ILE D 38 5 3 HELIX 25 AC7 TRP D 55 THR D 60 1 6 HELIX 26 AC8 ASP D 61 GLU D 72 1 12 SHEET 1 AA1 2 VAL B 67 HIS B 71 0 SHEET 2 AA1 2 LYS B 86 LEU B 90 -1 O VAL B 89 N GLU B 68 SHEET 1 AA2 6 THR C 5 ILE C 8 0 SHEET 2 AA2 6 GLU C 28 TYR C 34 1 O ALA C 29 N LYS C 7 SHEET 3 AA2 6 GLY C 18 SER C 25 -1 N LEU C 21 O LYS C 33 SHEET 4 AA2 6 TYR C 76 SER C 83 -1 O TYR C 76 N ILE C 24 SHEET 5 AA2 6 GLU C 86 GLU C 89 -1 O VAL C 88 N MET C 81 SHEET 6 AA2 6 THR C 5 ILE C 8 -1 N TYR C 6 O PHE C 87 SHEET 1 AA3 2 VAL A 67 HIS A 71 0 SHEET 2 AA3 2 LYS A 86 LEU A 90 -1 O VAL A 89 N GLU A 68 SHEET 1 AA4 6 THR D 5 ILE D 8 0 SHEET 2 AA4 6 GLU D 28 TYR D 34 1 O ALA D 29 N LYS D 7 SHEET 3 AA4 6 GLY D 18 SER D 25 -1 N LEU D 21 O LYS D 33 SHEET 4 AA4 6 TYR D 76 SER D 83 -1 O TYR D 76 N ILE D 24 SHEET 5 AA4 6 GLU D 86 GLU D 89 -1 O VAL D 88 N MET D 81 SHEET 6 AA4 6 THR D 5 ILE D 8 -1 N TYR D 6 O PHE D 87 CRYST1 45.961 47.633 61.716 107.44 97.49 115.25 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021758 0.010260 0.007545 0.00000 SCALE2 0.000000 0.023211 0.010018 0.00000 SCALE3 0.000000 0.000000 0.017800 0.00000 MASTER 563 0 0 26 16 0 0 6 3710 4 0 40 END