HEADER HYDROLASE 08-AUG-24 9J3W TITLE CRYSTAL STRUCTURE OF GLUCOSE BOUND BETA-GLUCOSIDASE UNBGL1 CAVEAT 9J3W GLC A 501 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOIL METAGENOME; SOURCE 3 ORGANISM_TAXID: 410658; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-GLUCOSIDASE, GLUCOSE, FEEDBACK INHIBITION, GLUCOSE TOLERANCE, KEYWDS 2 GH1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.SURYAWANSHI,R.K.BEDI,P.BHAUMIK REVDAT 1 11-FEB-26 9J3W 0 JRNL AUTH A.B.SURYAWANSHI,R.K.BEDI,M.PAWAR,S.NORONHA,P.BHAUMIK JRNL TITL REWIRING CATALYTIC CRATERS: A PATH FOR ENGINEERING JRNL TITL 2 BETA-GLUCOSIDASES TO IMPROVE GLUCOSE TOLERANCE JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.01.02.631061 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.1780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 557 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3401 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5201 ; 1.903 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7816 ; 0.671 ; 1.767 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ; 5.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 541 ;10.871 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4696 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 918 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1861 ; 1.166 ; 0.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1861 ; 1.164 ; 0.955 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2330 ; 1.605 ; 1.711 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2331 ; 1.618 ; 1.714 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1931 ; 2.152 ; 1.180 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1928 ; 2.137 ; 1.176 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2855 ; 3.270 ; 2.040 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4548 ; 4.940 ;14.180 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4345 ; 4.596 ;11.260 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9J3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344M POTASSIUM PHOSPHATE DIBASIC, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 GLU A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 927 1.11 REMARK 500 NH1 ARG A 96 OE2 GLU A 370 1.89 REMARK 500 OE2 GLU A 171 O HOH A 601 1.96 REMARK 500 OE2 GLU A 171 O HOH A 602 1.98 REMARK 500 OD1 ASP A 125 NH1 ARG A 176 1.98 REMARK 500 O HOH A 605 O HOH A 717 2.03 REMARK 500 NH1 ARG A 89 O HOH A 603 2.08 REMARK 500 OD2 ASP A 9 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 621 O HOH A 1129 3746 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 96 CD - NE - CZ ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 267 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 445 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 459 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 459 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 -125.02 50.23 REMARK 500 ASP A 109 -160.02 -105.17 REMARK 500 TRP A 141 -6.18 92.74 REMARK 500 ASP A 142 56.72 -93.03 REMARK 500 ASP A 142 57.69 -93.82 REMARK 500 THR A 182 -71.04 -73.05 REMARK 500 TYR A 312 -40.69 -130.98 REMARK 500 TRP A 425 -129.86 49.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 172 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9J3W A 1 469 UNP K4I4U1 K4I4U1_9BACT 1 469 SEQADV 9J3W LEU A 470 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W GLU A 471 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 472 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 473 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 474 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 475 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 476 UNP K4I4U1 EXPRESSION TAG SEQADV 9J3W HIS A 477 UNP K4I4U1 EXPRESSION TAG SEQRES 1 A 477 MET THR HIS PRO LEU ASP ARG THR ASP PRO GLU GLY THR SEQRES 2 A 477 SER VAL SER ILE ASP ALA ILE ASP LEU ALA ALA LEU PRO SEQRES 3 A 477 HIS ASP PHE LEU TRP GLY THR ALA THR SER ALA TYR GLN SEQRES 4 A 477 ILE GLU GLY ALA VAL ALA GLU ASP GLY ARG SER PRO SER SEQRES 5 A 477 ILE TRP ASP THR PHE SER HIS THR PRO GLY LYS ILE ASP SEQRES 6 A 477 ASN GLY ASP HIS GLY ASP VAL ALA CYS ASP HIS TYR HIS SEQRES 7 A 477 ARG TRP ARG GLU ASP ILE ALA LEU MET ARG ARG LEU GLY SEQRES 8 A 477 THR ASN ALA TYR ARG MET SER VAL ALA TRP PRO ARG VAL SEQRES 9 A 477 LEU PRO GLY GLY ASP GLY PRO VAL ASN VAL LYS GLY LEU SEQRES 10 A 477 ASP PHE TYR ASP GLN LEU THR ASP ALA LEU LEU GLU ALA SEQRES 11 A 477 GLY ILE THR PRO SER VAL THR LEU TYR HIS TRP ASP LEU SEQRES 12 A 477 PRO GLN VAL LEU GLN ASP ARG GLY GLY TRP PRO GLU ARG SEQRES 13 A 477 ALA THR ALA GLU HIS LEU ALA ALA TYR ALA SER VAL VAL SEQRES 14 A 477 ALA GLU ARG LEU GLY ASP ARG VAL THR HIS PHE THR THR SEQRES 15 A 477 LEU ASN GLU PRO LEU CYS SER ALA TRP ILE GLY HIS LEU SEQRES 16 A 477 GLU GLY ARG MET ALA PRO GLY LEU THR ASP LEU THR ALA SEQRES 17 A 477 ALA VAL ARG ALA SER TYR HIS LEU LEU LEU GLY HIS GLY SEQRES 18 A 477 LEU ALA ALA GLN ALA VAL ARG ALA ALA ALA PRO HIS ALA SEQRES 19 A 477 GLN VAL GLY ILE VAL ASN ASN LEU SER THR VAL HIS PRO SEQRES 20 A 477 ALA SER ASP ARG PRO GLU ASP VAL ALA ALA ALA ARG ARG SEQRES 21 A 477 HIS ASP GLY HIS THR ASN ARG TRP TRP LEU ASP PRO LEU SEQRES 22 A 477 HIS GLY ARG GLY PHE PRO ALA ASP MET ARG GLU VAL TYR SEQRES 23 A 477 GLY VAL ASP LEU PRO GLU ARG PRO GLY ASP LEU GLU THR SEQRES 24 A 477 ILE ALA THR PRO LEU ASP TRP LEU GLY LEU ASN TYR TYR SEQRES 25 A 477 PHE PRO ALA TYR ILE ALA ASP ASP PRO ASP GLY PRO ALA SEQRES 26 A 477 PRO ARG ALA ARG MET VAL ASP ARG GLU GLY VAL PRO ARG SEQRES 27 A 477 THR GLY MET GLY TRP GLU ILE ASP ALA ASP GLY ILE GLU SEQRES 28 A 477 THR LEU LEU LEU ARG LEU THR ARG GLU TYR GLY ALA ARG SEQRES 29 A 477 LYS LEU TYR VAL THR GLU ASN GLY SER ALA PHE PRO ASP SEQRES 30 A 477 ALA VAL ARG PRO ASP GLY THR VAL ASP ASP PRO GLU ARG SEQRES 31 A 477 ARG ASP TYR LEU GLU ARG HIS LEU ALA ALA CYS ALA SER SEQRES 32 A 477 ALA ALA ARG ARG GLY ALA PRO LEU ALA GLY TYR PHE ALA SEQRES 33 A 477 TRP SER LEU LEU ASP ASN PHE GLU TRP ALA TYR GLY TYR SEQRES 34 A 477 ASP LYS ARG PHE GLY LEU VAL HIS VAL ASP TYR ALA THR SEQRES 35 A 477 GLN THR ARG THR VAL LYS GLY SER GLY HIS ARG TYR ALA SEQRES 36 A 477 GLU ILE ILE ARG ALA HIS ARG ASP GLY GLY GLN LYS ALA SEQRES 37 A 477 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GLC A 501 12 HET GLC A 502 12 HET BGC A 503 12 HET PO4 A 504 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 4 BGC C6 H12 O6 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *557(H2 O) HELIX 1 AA1 ASP A 21 LEU A 25 5 5 HELIX 2 AA2 SER A 36 GLU A 41 1 6 HELIX 3 AA3 SER A 52 HIS A 59 1 8 HELIX 4 AA4 ILE A 64 ASP A 68 5 5 HELIX 5 AA5 ASP A 75 LEU A 90 1 16 HELIX 6 AA6 ALA A 100 LEU A 105 1 6 HELIX 7 AA7 ASN A 113 ALA A 130 1 18 HELIX 8 AA8 PRO A 144 ARG A 150 1 7 HELIX 9 AA9 ARG A 156 GLY A 174 1 19 HELIX 10 AB1 GLU A 185 LEU A 195 1 11 HELIX 11 AB2 ASP A 205 ALA A 231 1 27 HELIX 12 AB3 ARG A 251 ASN A 266 1 16 HELIX 13 AB4 ASN A 266 HIS A 274 1 9 HELIX 14 AB5 PRO A 279 GLY A 287 1 9 HELIX 15 AB6 GLY A 295 ALA A 301 1 7 HELIX 16 AB7 ALA A 347 TYR A 361 1 15 HELIX 17 AB8 ASP A 387 ARG A 407 1 21 HELIX 18 AB9 GLU A 424 LYS A 431 5 8 HELIX 19 AC1 LYS A 448 GLY A 465 1 18 SHEET 1 AA1 9 LEU A 30 ALA A 34 0 SHEET 2 AA1 9 ALA A 94 SER A 98 1 O ARG A 96 N THR A 33 SHEET 3 AA1 9 THR A 133 TYR A 139 1 O THR A 137 N MET A 97 SHEET 4 AA1 9 HIS A 179 ASN A 184 1 O THR A 181 N LEU A 138 SHEET 5 AA1 9 GLN A 235 ASN A 241 1 O GLY A 237 N PHE A 180 SHEET 6 AA1 9 TRP A 306 ASN A 310 1 O GLY A 308 N ILE A 238 SHEET 7 AA1 9 LEU A 366 ASN A 371 1 O TYR A 367 N LEU A 309 SHEET 8 AA1 9 LEU A 411 TRP A 417 1 O ALA A 412 N LEU A 366 SHEET 9 AA1 9 LEU A 30 ALA A 34 1 N GLY A 32 O TYR A 414 SHEET 1 AA2 3 VAL A 245 PRO A 247 0 SHEET 2 AA2 3 ALA A 315 ASP A 319 1 O ILE A 317 N HIS A 246 SHEET 3 AA2 3 ALA A 328 MET A 330 -1 O ARG A 329 N ALA A 318 SHEET 1 AA3 2 VAL A 436 VAL A 438 0 SHEET 2 AA3 2 ARG A 445 VAL A 447 -1 O THR A 446 N HIS A 437 CISPEP 1 ALA A 200 PRO A 201 0 2.48 CISPEP 2 ALA A 325 PRO A 326 0 6.79 CISPEP 3 TRP A 417 SER A 418 0 7.21 CRYST1 51.910 66.180 138.170 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007237 0.00000 CONECT 3640 3641 3646 3650 CONECT 3641 3640 3642 3647 CONECT 3642 3641 3643 3648 CONECT 3643 3642 3644 3649 CONECT 3644 3643 3645 3650 CONECT 3645 3644 3651 CONECT 3646 3640 CONECT 3647 3641 CONECT 3648 3642 CONECT 3649 3643 CONECT 3650 3640 3644 CONECT 3651 3645 CONECT 3652 3653 3658 3662 CONECT 3653 3652 3654 3659 CONECT 3654 3653 3655 3660 CONECT 3655 3654 3656 3661 CONECT 3656 3655 3657 3662 CONECT 3657 3656 3663 CONECT 3658 3652 CONECT 3659 3653 CONECT 3660 3654 CONECT 3661 3655 CONECT 3662 3652 3656 CONECT 3663 3657 CONECT 3664 3665 3669 3671 CONECT 3665 3664 3666 3672 CONECT 3666 3665 3667 3673 CONECT 3667 3666 3668 3674 CONECT 3668 3667 3675 CONECT 3669 3664 3670 3674 CONECT 3670 3669 CONECT 3671 3664 CONECT 3672 3665 CONECT 3673 3666 CONECT 3674 3667 3669 CONECT 3675 3668 CONECT 3676 3677 3678 3679 3680 CONECT 3677 3676 CONECT 3678 3676 CONECT 3679 3676 CONECT 3680 3676 MASTER 370 0 4 19 14 0 0 6 4184 1 41 37 END