HEADER HYDROLASE 09-AUG-24 9J49 TITLE HIGH RESOLUTION CRYSTAL STRUCUTRE OF HIGHLY GLUCOSE TOLERANT GH1 BETA- TITLE 2 GLUCOSIDASE (UNBGL1_C188V_H261W) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOIL METAGENOME; SOURCE 3 ORGANISM_TAXID: 410658; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GH1, BETA-GLUCOSIDASE, GLUCOSE TOLERANT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.SURYAWANSHI,P.BHAUMIK REVDAT 1 04-FEB-26 9J49 0 JRNL AUTH A.B.SURYAWANSHI,R.K.BEDI,M.PAWAR,S.NORONHA,P.BHAUMIK JRNL TITL REWIRING CATALYTIC CRATERS: A PATH FOR ENGINEERING JRNL TITL 2 BETA-GLUCOSIDASES TO IMPROVE GLUCOSE TOLERANCE JRNL REF BIORXIV 2025 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.01.02.631061 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3991 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3597 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5469 ; 1.679 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8266 ; 0.594 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ; 9.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;12.265 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4880 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 992 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 1.277 ; 1.035 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1926 ; 1.246 ; 1.034 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2419 ; 1.847 ; 1.852 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2420 ; 1.848 ; 1.852 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2064 ; 2.320 ; 1.301 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2065 ; 2.320 ; 1.302 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3034 ; 3.545 ; 2.256 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4759 ; 5.241 ;15.030 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4574 ; 4.808 ;11.770 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9J49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97777 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 743.0 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.17 REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344M POTASSIUM PHOSPHATE DIBASIC, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.87500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 465 REMARK 465 GLN A 466 REMARK 465 LYS A 467 REMARK 465 ALA A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 GLU A 471 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 97 CB CG CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH2 TRP A 261 O HOH A 913 1.64 REMARK 500 O HOH A 827 O HOH A 1029 1.90 REMARK 500 O HOH A 609 O HOH A 914 1.95 REMARK 500 O HOH A 752 O HOH A 1046 1.96 REMARK 500 OE1 GLU A 11 O HOH A 601 1.97 REMARK 500 NH2 ARG A 251 O HOH A 602 1.98 REMARK 500 O HOH A 733 O HOH A 1000 2.00 REMARK 500 O HOH A 929 O HOH A 942 2.00 REMARK 500 O HOH A 708 O HOH A 956 2.02 REMARK 500 O HOH A 993 O HOH A 1111 2.03 REMARK 500 O HOH A 926 O HOH A 1100 2.03 REMARK 500 O HOH A 861 O HOH A 964 2.04 REMARK 500 O HOH A 956 O HOH A 1011 2.04 REMARK 500 O HOH A 894 O HOH A 1023 2.06 REMARK 500 O HOH A 981 O HOH A 993 2.07 REMARK 500 O HOH A 888 O HOH A 950 2.08 REMARK 500 O HOH A 785 O HOH A 948 2.10 REMARK 500 OD1 ASP A 332 O HOH A 603 2.10 REMARK 500 O HOH A 703 O HOH A 916 2.13 REMARK 500 O HOH A 683 O HOH A 962 2.14 REMARK 500 O HOH A 615 O HOH A 1061 2.15 REMARK 500 O HOH A 622 O HOH A 633 2.16 REMARK 500 O HOH A 923 O HOH A 1096 2.16 REMARK 500 O HOH A 676 O HOH A 712 2.16 REMARK 500 O HOH A 683 O HOH A 1043 2.17 REMARK 500 N HIS A 472 O HOH A 604 2.19 REMARK 500 O HOH A 1004 O HOH A 1017 2.19 REMARK 500 O HOH A 849 O HOH A 965 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 806 O HOH A 956 3644 1.97 REMARK 500 OD1 ASP A 125 O2 GOL A 503 3654 2.03 REMARK 500 O HOH A 860 O HOH A 991 4445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 298 CD GLU A 298 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 73 -126.93 54.47 REMARK 500 ASP A 109 -160.29 -101.11 REMARK 500 TRP A 141 -8.46 94.09 REMARK 500 ASP A 142 54.63 -92.97 REMARK 500 THR A 182 -71.54 -69.26 REMARK 500 TYR A 312 -40.61 -130.67 REMARK 500 TRP A 425 -131.85 51.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 96 0.08 SIDE CHAIN REMARK 500 ARG A 172 0.08 SIDE CHAIN REMARK 500 ARG A 251 0.11 SIDE CHAIN REMARK 500 ARG A 283 0.08 SIDE CHAIN REMARK 500 ARG A 327 0.13 SIDE CHAIN REMARK 500 ARG A 338 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9J49 A 1 469 UNP K4I4U1 K4I4U1_9BACT 1 469 SEQADV 9J49 VAL A 188 UNP K4I4U1 CYS 188 ENGINEERED MUTATION SEQADV 9J49 TRP A 261 UNP K4I4U1 HIS 261 ENGINEERED MUTATION SEQADV 9J49 LEU A 470 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 GLU A 471 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 472 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 473 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 474 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 475 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 476 UNP K4I4U1 EXPRESSION TAG SEQADV 9J49 HIS A 477 UNP K4I4U1 EXPRESSION TAG SEQRES 1 A 477 MET THR HIS PRO LEU ASP ARG THR ASP PRO GLU GLY THR SEQRES 2 A 477 SER VAL SER ILE ASP ALA ILE ASP LEU ALA ALA LEU PRO SEQRES 3 A 477 HIS ASP PHE LEU TRP GLY THR ALA THR SER ALA TYR GLN SEQRES 4 A 477 ILE GLU GLY ALA VAL ALA GLU ASP GLY ARG SER PRO SER SEQRES 5 A 477 ILE TRP ASP THR PHE SER HIS THR PRO GLY LYS ILE ASP SEQRES 6 A 477 ASN GLY ASP HIS GLY ASP VAL ALA CYS ASP HIS TYR HIS SEQRES 7 A 477 ARG TRP ARG GLU ASP ILE ALA LEU MET ARG ARG LEU GLY SEQRES 8 A 477 THR ASN ALA TYR ARG MET SER VAL ALA TRP PRO ARG VAL SEQRES 9 A 477 LEU PRO GLY GLY ASP GLY PRO VAL ASN VAL LYS GLY LEU SEQRES 10 A 477 ASP PHE TYR ASP GLN LEU THR ASP ALA LEU LEU GLU ALA SEQRES 11 A 477 GLY ILE THR PRO SER VAL THR LEU TYR HIS TRP ASP LEU SEQRES 12 A 477 PRO GLN VAL LEU GLN ASP ARG GLY GLY TRP PRO GLU ARG SEQRES 13 A 477 ALA THR ALA GLU HIS LEU ALA ALA TYR ALA SER VAL VAL SEQRES 14 A 477 ALA GLU ARG LEU GLY ASP ARG VAL THR HIS PHE THR THR SEQRES 15 A 477 LEU ASN GLU PRO LEU VAL SER ALA TRP ILE GLY HIS LEU SEQRES 16 A 477 GLU GLY ARG MET ALA PRO GLY LEU THR ASP LEU THR ALA SEQRES 17 A 477 ALA VAL ARG ALA SER TYR HIS LEU LEU LEU GLY HIS GLY SEQRES 18 A 477 LEU ALA ALA GLN ALA VAL ARG ALA ALA ALA PRO HIS ALA SEQRES 19 A 477 GLN VAL GLY ILE VAL ASN ASN LEU SER THR VAL HIS PRO SEQRES 20 A 477 ALA SER ASP ARG PRO GLU ASP VAL ALA ALA ALA ARG ARG SEQRES 21 A 477 TRP ASP GLY HIS THR ASN ARG TRP TRP LEU ASP PRO LEU SEQRES 22 A 477 HIS GLY ARG GLY PHE PRO ALA ASP MET ARG GLU VAL TYR SEQRES 23 A 477 GLY VAL ASP LEU PRO GLU ARG PRO GLY ASP LEU GLU THR SEQRES 24 A 477 ILE ALA THR PRO LEU ASP TRP LEU GLY LEU ASN TYR TYR SEQRES 25 A 477 PHE PRO ALA TYR ILE ALA ASP ASP PRO ASP GLY PRO ALA SEQRES 26 A 477 PRO ARG ALA ARG MET VAL ASP ARG GLU GLY VAL PRO ARG SEQRES 27 A 477 THR GLY MET GLY TRP GLU ILE ASP ALA ASP GLY ILE GLU SEQRES 28 A 477 THR LEU LEU LEU ARG LEU THR ARG GLU TYR GLY ALA ARG SEQRES 29 A 477 LYS LEU TYR VAL THR GLU ASN GLY SER ALA PHE PRO ASP SEQRES 30 A 477 ALA VAL ARG PRO ASP GLY THR VAL ASP ASP PRO GLU ARG SEQRES 31 A 477 ARG ASP TYR LEU GLU ARG HIS LEU ALA ALA CYS ALA SER SEQRES 32 A 477 ALA ALA ARG ARG GLY ALA PRO LEU ALA GLY TYR PHE ALA SEQRES 33 A 477 TRP SER LEU LEU ASP ASN PHE GLU TRP ALA TYR GLY TYR SEQRES 34 A 477 ASP LYS ARG PHE GLY LEU VAL HIS VAL ASP TYR ALA THR SEQRES 35 A 477 GLN THR ARG THR VAL LYS GLY SER GLY HIS ARG TYR ALA SEQRES 36 A 477 GLU ILE ILE ARG ALA HIS ARG ASP GLY GLY GLN LYS ALA SEQRES 37 A 477 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PO4 A 501 5 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 12 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *523(H2 O) HELIX 1 AA1 HIS A 3 ARG A 7 5 5 HELIX 2 AA2 ASP A 21 LEU A 25 5 5 HELIX 3 AA3 SER A 36 GLU A 41 1 6 HELIX 4 AA4 SER A 52 HIS A 59 1 8 HELIX 5 AA5 ILE A 64 ASP A 68 5 5 HELIX 6 AA6 ASP A 75 GLY A 91 1 17 HELIX 7 AA7 ALA A 100 LEU A 105 1 6 HELIX 8 AA8 ASN A 113 ALA A 130 1 18 HELIX 9 AA9 PRO A 144 ARG A 150 1 7 HELIX 10 AB1 ARG A 156 GLY A 174 1 19 HELIX 11 AB2 GLU A 185 LEU A 195 1 11 HELIX 12 AB3 ASP A 205 ALA A 231 1 27 HELIX 13 AB4 ARG A 251 ASN A 266 1 16 HELIX 14 AB5 ASN A 266 HIS A 274 1 9 HELIX 15 AB6 PRO A 279 GLY A 287 1 9 HELIX 16 AB7 GLY A 295 ALA A 301 1 7 HELIX 17 AB8 ALA A 347 GLY A 362 1 16 HELIX 18 AB9 ASP A 387 ARG A 407 1 21 HELIX 19 AC1 GLU A 424 LYS A 431 5 8 HELIX 20 AC2 LYS A 448 GLY A 464 1 17 SHEET 1 AA1 9 LEU A 30 ALA A 34 0 SHEET 2 AA1 9 ALA A 94 SER A 98 1 O ARG A 96 N THR A 33 SHEET 3 AA1 9 THR A 133 TYR A 139 1 O THR A 137 N MET A 97 SHEET 4 AA1 9 HIS A 179 ASN A 184 1 O THR A 181 N LEU A 138 SHEET 5 AA1 9 GLN A 235 ASN A 241 1 O GLY A 237 N PHE A 180 SHEET 6 AA1 9 TRP A 306 ASN A 310 1 O GLY A 308 N ILE A 238 SHEET 7 AA1 9 LEU A 366 ASN A 371 1 O TYR A 367 N LEU A 309 SHEET 8 AA1 9 LEU A 411 TRP A 417 1 O ALA A 412 N LEU A 366 SHEET 9 AA1 9 LEU A 30 ALA A 34 1 N GLY A 32 O TYR A 414 SHEET 1 AA2 3 VAL A 245 PRO A 247 0 SHEET 2 AA2 3 ALA A 315 ASP A 319 1 O ILE A 317 N HIS A 246 SHEET 3 AA2 3 ALA A 328 MET A 330 -1 O ARG A 329 N ALA A 318 SHEET 1 AA3 2 VAL A 436 VAL A 438 0 SHEET 2 AA3 2 ARG A 445 VAL A 447 -1 O THR A 446 N HIS A 437 CISPEP 1 ALA A 200 PRO A 201 0 3.42 CISPEP 2 ALA A 325 PRO A 326 0 4.15 CISPEP 3 TRP A 417 SER A 418 0 8.37 CRYST1 51.750 66.380 137.490 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007273 0.00000 CONECT 3813 3814 3815 3816 3817 CONECT 3814 3813 CONECT 3815 3813 CONECT 3816 3813 CONECT 3817 3813 CONECT 3818 3819 3820 CONECT 3819 3818 CONECT 3820 3818 3821 3822 CONECT 3821 3820 CONECT 3822 3820 3823 CONECT 3823 3822 CONECT 3824 3825 3826 CONECT 3825 3824 CONECT 3826 3824 3827 3828 CONECT 3827 3826 CONECT 3828 3826 3829 CONECT 3829 3828 CONECT 3830 3832 3834 CONECT 3831 3833 3835 CONECT 3832 3830 CONECT 3833 3831 CONECT 3834 3830 3836 3838 CONECT 3835 3831 3837 3839 CONECT 3836 3834 CONECT 3837 3835 CONECT 3838 3834 3840 CONECT 3839 3835 3841 CONECT 3840 3838 CONECT 3841 3839 CONECT 3842 3843 3844 CONECT 3843 3842 CONECT 3844 3842 3845 3846 CONECT 3845 3844 CONECT 3846 3844 3847 CONECT 3847 3846 CONECT 3848 3849 3850 CONECT 3849 3848 CONECT 3850 3848 3851 3852 CONECT 3851 3850 CONECT 3852 3850 3853 CONECT 3853 3852 CONECT 3854 3855 3856 CONECT 3855 3854 CONECT 3856 3854 3857 3858 CONECT 3857 3856 CONECT 3858 3856 3859 CONECT 3859 3858 CONECT 3860 3861 3862 CONECT 3861 3860 CONECT 3862 3860 3863 3864 CONECT 3863 3862 CONECT 3864 3862 3865 CONECT 3865 3864 CONECT 3866 3867 3868 CONECT 3867 3866 CONECT 3868 3866 3869 3870 CONECT 3869 3868 CONECT 3870 3868 3871 CONECT 3871 3870 MASTER 405 0 9 20 14 0 0 6 4256 1 59 37 END