HEADER ISOMERASE 23-AUG-24 9J9S TITLE ARTIFICIAL MONONUCLEAR ZN-BOUND METALLOPROTEIN 5 (M5:ZN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE,DTDP-4- COMPND 5 KETO-6-DEOXYGLUCOSE 3,DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,DTDP-L- COMPND 6 RHAMNOSE SYNTHASE; COMPND 7 EC: 5.1.3.13; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: DEOXYTHYMIDINE DIPHOSPHATE (DTDP)-4-KETO-6-DEOXY-D- COMPND 10 HEXULOSE 3, 5-EPIMERASE (RMLC) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: RMLC, MTH_1790; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOPHILIC ISOMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.JEONG,W.J.SONG REVDAT 2 21-JAN-26 9J9S 1 JRNL REVDAT 1 02-JUL-25 9J9S 0 JRNL AUTH W.J.JEONG,S.J.HA,W.J.SONG JRNL TITL ACCURATE COMPUTATIONAL DESIGN OF ARTIFICIAL METALLOPROTEINS JRNL TITL 2 USING METAL-INSTALLER. JRNL REF CHEM V. 11 2025 JRNL REFN ESSN 2451-9294 JRNL DOI 10.1016/J.CHEMPR.2025.102644 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 24738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1302 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 4.34000 REMARK 3 B12 (A**2) : -0.93000 REMARK 3 B13 (A**2) : 0.74000 REMARK 3 B23 (A**2) : 0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.390 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.860 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.804 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6244 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5636 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8462 ; 1.270 ; 1.832 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12980 ; 0.472 ; 1.782 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 728 ; 6.905 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ; 4.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1034 ;16.568 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7566 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1554 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2924 ; 2.589 ; 3.299 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2924 ; 2.589 ; 3.299 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3648 ; 4.143 ; 5.921 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3649 ; 4.142 ; 5.922 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3320 ; 3.008 ; 3.734 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3321 ; 3.008 ; 3.734 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4815 ; 5.035 ; 6.685 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 25089 ; 8.518 ;43.050 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 25058 ; 8.513 ;43.070 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9J9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.280 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 20 % PEG 4000, PH 8.0 REMARK 280 0.1M MOPS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 26.19810 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -58.26622 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -26.19810 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 58.26622 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 5 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 184 OE1 GLU B 161 1.95 REMARK 500 OH TYR C 184 OE1 GLU D 161 2.13 REMARK 500 O GLU D 116 O HOH D 301 2.15 REMARK 500 O ILE C 154 O HOH C 301 2.17 REMARK 500 OG1 THR A 100 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 68 -64.45 71.79 REMARK 500 ASP A 165 93.11 67.77 REMARK 500 GLU B 68 -52.06 72.96 REMARK 500 ASP B 165 107.12 58.16 REMARK 500 GLU C 68 -55.00 73.01 REMARK 500 ASP C 165 97.62 66.45 REMARK 500 GLU D 68 -53.89 73.74 REMARK 500 ASP D 165 106.13 56.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 337 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH C 344 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH C 345 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH D 344 DISTANCE = 7.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 106 OD1 REMARK 620 2 HOH A 308 O 37.7 REMARK 620 3 HIS B 52 NE2 38.7 2.6 REMARK 620 4 HIS B 54 NE2 36.6 1.5 2.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 140 ND1 REMARK 620 2 GLU B 142 OE1 82.1 REMARK 620 3 GLU B 142 OE2 87.9 57.5 REMARK 620 4 HOH B 323 O 102.7 138.5 81.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 106 OD1 REMARK 620 2 HOH C 305 O 37.7 REMARK 620 3 HIS D 52 NE2 40.1 2.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 140 ND1 REMARK 620 2 GLU D 142 OE1 94.7 REMARK 620 3 GLU D 142 OE2 96.1 61.4 REMARK 620 N 1 2 DBREF 9J9S A 3 185 UNP O27818 RMLC_METTH 3 185 DBREF 9J9S B 3 185 UNP O27818 RMLC_METTH 3 185 DBREF 9J9S C 3 185 UNP O27818 RMLC_METTH 3 185 DBREF 9J9S D 3 185 UNP O27818 RMLC_METTH 3 185 SEQADV 9J9S HIS A 52 UNP O27818 GLU 52 CONFLICT SEQADV 9J9S HIS A 54 UNP O27818 MET 54 CONFLICT SEQADV 9J9S HIS A 130 UNP O27818 ILE 130 CONFLICT SEQADV 9J9S HIS B 52 UNP O27818 GLU 52 CONFLICT SEQADV 9J9S HIS B 54 UNP O27818 MET 54 CONFLICT SEQADV 9J9S HIS B 130 UNP O27818 ILE 130 CONFLICT SEQADV 9J9S HIS C 52 UNP O27818 GLU 52 CONFLICT SEQADV 9J9S HIS C 54 UNP O27818 MET 54 CONFLICT SEQADV 9J9S HIS C 130 UNP O27818 ILE 130 CONFLICT SEQADV 9J9S HIS D 52 UNP O27818 GLU 52 CONFLICT SEQADV 9J9S HIS D 54 UNP O27818 MET 54 CONFLICT SEQADV 9J9S HIS D 130 UNP O27818 ILE 130 CONFLICT SEQRES 1 A 183 GLU PHE ARG PHE ILE LYS THR SER LEU ASP GLY ALA ILE SEQRES 2 A 183 ILE ILE GLU PRO GLU VAL TYR THR ASP GLU ARG GLY TYR SEQRES 3 A 183 PHE MET GLU THR PHE ASN GLU ALA ILE PHE GLN GLU ASN SEQRES 4 A 183 GLY LEU GLU VAL ARG PHE VAL GLN ASP ASN HIS SER HIS SEQRES 5 A 183 SER VAL ARG GLY VAL LEU ARG GLY LEU HIS PHE GLN ARG SEQRES 6 A 183 GLU LYS PRO GLN GLY LYS LEU VAL ARG VAL ILE ARG GLY SEQRES 7 A 183 GLU ILE PHE ASP VAL ALA VAL ASP LEU ARG LYS ASN SER SEQRES 8 A 183 ASP THR TYR GLY GLU TRP THR GLY VAL ARG LEU SER ASP SEQRES 9 A 183 GLU ASN ARG ARG GLU PHE PHE ILE PRO GLU GLY PHE ALA SEQRES 10 A 183 HIS GLY PHE LEU ALA LEU SER ASP GLU CYS HIS VAL ASN SEQRES 11 A 183 TYR LYS CYS THR GLU LEU TYR HIS PRO GLU TYR ASP SER SEQRES 12 A 183 GLY ILE PRO TRP ASP ASP PRO ASP ILE GLY ILE ASP TRP SEQRES 13 A 183 PRO LEU GLU MET VAL ASP ASP LEU ILE ILE SER GLU LYS SEQRES 14 A 183 ASP ARG ASN TRP LYS PRO LEU ARG GLU ASN PRO VAL TYR SEQRES 15 A 183 LEU SEQRES 1 B 183 GLU PHE ARG PHE ILE LYS THR SER LEU ASP GLY ALA ILE SEQRES 2 B 183 ILE ILE GLU PRO GLU VAL TYR THR ASP GLU ARG GLY TYR SEQRES 3 B 183 PHE MET GLU THR PHE ASN GLU ALA ILE PHE GLN GLU ASN SEQRES 4 B 183 GLY LEU GLU VAL ARG PHE VAL GLN ASP ASN HIS SER HIS SEQRES 5 B 183 SER VAL ARG GLY VAL LEU ARG GLY LEU HIS PHE GLN ARG SEQRES 6 B 183 GLU LYS PRO GLN GLY LYS LEU VAL ARG VAL ILE ARG GLY SEQRES 7 B 183 GLU ILE PHE ASP VAL ALA VAL ASP LEU ARG LYS ASN SER SEQRES 8 B 183 ASP THR TYR GLY GLU TRP THR GLY VAL ARG LEU SER ASP SEQRES 9 B 183 GLU ASN ARG ARG GLU PHE PHE ILE PRO GLU GLY PHE ALA SEQRES 10 B 183 HIS GLY PHE LEU ALA LEU SER ASP GLU CYS HIS VAL ASN SEQRES 11 B 183 TYR LYS CYS THR GLU LEU TYR HIS PRO GLU TYR ASP SER SEQRES 12 B 183 GLY ILE PRO TRP ASP ASP PRO ASP ILE GLY ILE ASP TRP SEQRES 13 B 183 PRO LEU GLU MET VAL ASP ASP LEU ILE ILE SER GLU LYS SEQRES 14 B 183 ASP ARG ASN TRP LYS PRO LEU ARG GLU ASN PRO VAL TYR SEQRES 15 B 183 LEU SEQRES 1 C 183 GLU PHE ARG PHE ILE LYS THR SER LEU ASP GLY ALA ILE SEQRES 2 C 183 ILE ILE GLU PRO GLU VAL TYR THR ASP GLU ARG GLY TYR SEQRES 3 C 183 PHE MET GLU THR PHE ASN GLU ALA ILE PHE GLN GLU ASN SEQRES 4 C 183 GLY LEU GLU VAL ARG PHE VAL GLN ASP ASN HIS SER HIS SEQRES 5 C 183 SER VAL ARG GLY VAL LEU ARG GLY LEU HIS PHE GLN ARG SEQRES 6 C 183 GLU LYS PRO GLN GLY LYS LEU VAL ARG VAL ILE ARG GLY SEQRES 7 C 183 GLU ILE PHE ASP VAL ALA VAL ASP LEU ARG LYS ASN SER SEQRES 8 C 183 ASP THR TYR GLY GLU TRP THR GLY VAL ARG LEU SER ASP SEQRES 9 C 183 GLU ASN ARG ARG GLU PHE PHE ILE PRO GLU GLY PHE ALA SEQRES 10 C 183 HIS GLY PHE LEU ALA LEU SER ASP GLU CYS HIS VAL ASN SEQRES 11 C 183 TYR LYS CYS THR GLU LEU TYR HIS PRO GLU TYR ASP SER SEQRES 12 C 183 GLY ILE PRO TRP ASP ASP PRO ASP ILE GLY ILE ASP TRP SEQRES 13 C 183 PRO LEU GLU MET VAL ASP ASP LEU ILE ILE SER GLU LYS SEQRES 14 C 183 ASP ARG ASN TRP LYS PRO LEU ARG GLU ASN PRO VAL TYR SEQRES 15 C 183 LEU SEQRES 1 D 183 GLU PHE ARG PHE ILE LYS THR SER LEU ASP GLY ALA ILE SEQRES 2 D 183 ILE ILE GLU PRO GLU VAL TYR THR ASP GLU ARG GLY TYR SEQRES 3 D 183 PHE MET GLU THR PHE ASN GLU ALA ILE PHE GLN GLU ASN SEQRES 4 D 183 GLY LEU GLU VAL ARG PHE VAL GLN ASP ASN HIS SER HIS SEQRES 5 D 183 SER VAL ARG GLY VAL LEU ARG GLY LEU HIS PHE GLN ARG SEQRES 6 D 183 GLU LYS PRO GLN GLY LYS LEU VAL ARG VAL ILE ARG GLY SEQRES 7 D 183 GLU ILE PHE ASP VAL ALA VAL ASP LEU ARG LYS ASN SER SEQRES 8 D 183 ASP THR TYR GLY GLU TRP THR GLY VAL ARG LEU SER ASP SEQRES 9 D 183 GLU ASN ARG ARG GLU PHE PHE ILE PRO GLU GLY PHE ALA SEQRES 10 D 183 HIS GLY PHE LEU ALA LEU SER ASP GLU CYS HIS VAL ASN SEQRES 11 D 183 TYR LYS CYS THR GLU LEU TYR HIS PRO GLU TYR ASP SER SEQRES 12 D 183 GLY ILE PRO TRP ASP ASP PRO ASP ILE GLY ILE ASP TRP SEQRES 13 D 183 PRO LEU GLU MET VAL ASP ASP LEU ILE ILE SER GLU LYS SEQRES 14 D 183 ASP ARG ASN TRP LYS PRO LEU ARG GLU ASN PRO VAL TYR SEQRES 15 D 183 LEU HET ZN A 201 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN C 201 1 HET ZN D 201 1 HET ZN D 202 1 HETNAM ZN ZINC ION FORMUL 5 ZN 6(ZN 2+) FORMUL 11 HOH *150(H2 O) HELIX 1 AA1 ASN A 34 ASN A 41 1 8 HELIX 2 AA2 PRO A 159 VAL A 163 5 5 HELIX 3 AA3 SER A 169 ASN A 174 1 6 HELIX 4 AA4 ASN B 34 ASN B 41 1 8 HELIX 5 AA5 HIS B 140 GLU B 142 5 3 HELIX 6 AA6 LYS B 171 TRP B 175 5 5 HELIX 7 AA7 ASN C 34 ASN C 41 1 8 HELIX 8 AA8 HIS C 140 GLU C 142 5 3 HELIX 9 AA9 PRO C 159 VAL C 163 5 5 HELIX 10 AB1 SER C 169 ASN C 174 1 6 HELIX 11 AB2 ASN D 34 ASN D 41 1 8 HELIX 12 AB3 LYS D 171 TRP D 175 5 5 SHEET 1 AA1 6 PHE A 4 LYS A 8 0 SHEET 2 AA1 6 ILE A 15 PRO A 19 -1 O ILE A 16 N ILE A 7 SHEET 3 AA1 6 GLU A 111 ILE A 114 -1 O GLU A 111 N ILE A 17 SHEET 4 AA1 6 LYS A 73 ARG A 79 -1 N LYS A 73 O ILE A 114 SHEET 5 AA1 6 GLU A 128 CYS A 135 -1 O ASN A 132 N ARG A 76 SHEET 6 AA1 6 GLN A 49 VAL A 56 -1 N GLN A 49 O CYS A 135 SHEET 1 AA2 2 VAL A 21 ASP A 24 0 SHEET 2 AA2 2 GLY A 27 MET A 30 -1 O PHE A 29 N TYR A 22 SHEET 1 AA3 5 TRP A 99 SER A 105 0 SHEET 2 AA3 5 GLU A 81 ASP A 88 -1 N ASP A 84 O VAL A 102 SHEET 3 AA3 5 PHE A 118 ALA A 124 -1 O ALA A 119 N VAL A 87 SHEET 4 AA3 5 LEU A 60 GLN A 66 -1 N HIS A 64 O HIS A 120 SHEET 5 AA3 5 ASP A 144 GLY A 146 -1 O SER A 145 N PHE A 65 SHEET 1 AA4 6 PHE B 4 LYS B 8 0 SHEET 2 AA4 6 ILE B 15 PRO B 19 -1 O ILE B 16 N ILE B 7 SHEET 3 AA4 6 GLU B 111 ILE B 114 -1 O GLU B 111 N ILE B 17 SHEET 4 AA4 6 LYS B 73 ARG B 79 -1 N LYS B 73 O ILE B 114 SHEET 5 AA4 6 CYS B 129 CYS B 135 -1 O ASN B 132 N ARG B 76 SHEET 6 AA4 6 GLN B 49 SER B 55 -1 N GLN B 49 O CYS B 135 SHEET 1 AA5 2 VAL B 21 ASP B 24 0 SHEET 2 AA5 2 GLY B 27 MET B 30 -1 O PHE B 29 N TYR B 22 SHEET 1 AA6 5 TRP B 99 SER B 105 0 SHEET 2 AA6 5 GLU B 81 ASP B 88 -1 N ASP B 84 O VAL B 102 SHEET 3 AA6 5 PHE B 118 ALA B 124 -1 O GLY B 121 N VAL B 85 SHEET 4 AA6 5 LEU B 60 GLN B 66 -1 N HIS B 64 O HIS B 120 SHEET 5 AA6 5 ASP B 144 GLY B 146 -1 O SER B 145 N PHE B 65 SHEET 1 AA7 6 PHE C 4 LYS C 8 0 SHEET 2 AA7 6 ILE C 15 PRO C 19 -1 O ILE C 16 N ILE C 7 SHEET 3 AA7 6 GLU C 111 ILE C 114 -1 O GLU C 111 N ILE C 17 SHEET 4 AA7 6 LYS C 73 ARG C 79 -1 N LYS C 73 O ILE C 114 SHEET 5 AA7 6 CYS C 129 CYS C 135 -1 O ASN C 132 N ARG C 76 SHEET 6 AA7 6 GLN C 49 SER C 55 -1 N GLN C 49 O CYS C 135 SHEET 1 AA8 2 VAL C 21 ASP C 24 0 SHEET 2 AA8 2 GLY C 27 MET C 30 -1 O PHE C 29 N TYR C 22 SHEET 1 AA9 5 TRP C 99 SER C 105 0 SHEET 2 AA9 5 GLU C 81 ASP C 88 -1 N ASP C 84 O VAL C 102 SHEET 3 AA9 5 PHE C 118 ALA C 124 -1 O ALA C 119 N VAL C 87 SHEET 4 AA9 5 LEU C 60 GLN C 66 -1 N HIS C 64 O HIS C 120 SHEET 5 AA9 5 ASP C 144 GLY C 146 -1 O SER C 145 N PHE C 65 SHEET 1 AB1 6 PHE D 4 LYS D 8 0 SHEET 2 AB1 6 ILE D 15 PRO D 19 -1 O ILE D 16 N ILE D 7 SHEET 3 AB1 6 GLU D 111 ILE D 114 -1 O GLU D 111 N ILE D 17 SHEET 4 AB1 6 LYS D 73 ARG D 79 -1 N LYS D 73 O ILE D 114 SHEET 5 AB1 6 CYS D 129 CYS D 135 -1 O HIS D 130 N ILE D 78 SHEET 6 AB1 6 GLN D 49 SER D 55 -1 N GLN D 49 O CYS D 135 SHEET 1 AB2 2 VAL D 21 ASP D 24 0 SHEET 2 AB2 2 GLY D 27 MET D 30 -1 O PHE D 29 N TYR D 22 SHEET 1 AB3 5 TRP D 99 SER D 105 0 SHEET 2 AB3 5 GLU D 81 ASP D 88 -1 N ASP D 84 O VAL D 102 SHEET 3 AB3 5 PHE D 118 ALA D 124 -1 O ALA D 119 N VAL D 87 SHEET 4 AB3 5 LEU D 60 GLN D 66 -1 N HIS D 64 O HIS D 120 SHEET 5 AB3 5 ASP D 144 GLY D 146 -1 O SER D 145 N PHE D 65 LINK OD1 ASP A 106 ZN ZN B 201 1555 1565 2.11 LINK ZN ZN A 201 OD1 ASP B 106 1545 1555 2.13 LINK O HOH A 308 ZN ZN B 201 1545 1555 2.61 LINK NE2 HIS B 52 ZN ZN B 201 1555 1555 2.16 LINK NE2 HIS B 54 ZN ZN B 201 1555 1555 2.45 LINK ND1 HIS B 140 ZN ZN B 202 1555 1555 2.14 LINK OE1 GLU B 142 ZN ZN B 202 1555 1555 2.05 LINK OE2 GLU B 142 ZN ZN B 202 1555 1555 2.54 LINK ZN ZN B 202 O HOH B 323 1555 1555 2.51 LINK NE2 HIS C 52 ZN ZN C 201 1555 1555 2.66 LINK OD1 ASP C 106 ZN ZN D 201 1555 1545 2.16 LINK O HOH C 305 ZN ZN D 201 1565 1555 2.50 LINK NE2 HIS D 52 ZN ZN D 201 1555 1555 2.21 LINK ND1 HIS D 140 ZN ZN D 202 1555 1555 2.02 LINK OE1 GLU D 142 ZN ZN D 202 1555 1555 2.35 LINK OE2 GLU D 142 ZN ZN D 202 1555 1555 1.91 CISPEP 1 GLY A 62 LEU A 63 0 -1.96 CISPEP 2 GLY B 62 LEU B 63 0 -0.45 CISPEP 3 GLY C 62 LEU C 63 0 -3.05 CISPEP 4 GLY D 62 LEU D 63 0 -5.47 CRYST1 52.449 63.885 73.972 90.09 89.99 114.21 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019066 0.008573 0.000011 0.00000 SCALE2 0.000000 0.017163 0.000029 0.00000 SCALE3 0.000000 0.000000 0.013519 0.00000 CONECT 1939 6086 CONECT 1955 6086 CONECT 2659 6087 CONECT 2677 6087 CONECT 2678 6087 CONECT 3457 6088 CONECT 4981 6089 CONECT 5701 6090 CONECT 5719 6090 CONECT 5720 6090 CONECT 6086 1939 1955 CONECT 6087 2659 2677 2678 6150 CONECT 6088 3457 CONECT 6089 4981 CONECT 6090 5701 5719 5720 CONECT 6150 6087 MASTER 367 0 6 12 52 0 0 6 6236 4 16 60 END