data_9JB0 # _entry.id 9JB0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JB0 pdb_00009jb0 10.2210/pdb9jb0/pdb WWPDB D_1300050441 ? ? EMDB EMD-61303 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-26 ? 2 'Structure model' 1 1 2025-04-02 ? 3 'Structure model' 1 2 2025-04-09 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin 4 3 'Structure model' citation 5 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_last' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.name' 5 2 'Structure model' '_em_admin.last_update' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JB0 _pdbx_database_status.recvd_initial_deposition_date 2024-08-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23' _pdbx_database_related.db_id EMD-61303 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email sthsu@gate.sinica.edu.tw _pdbx_contact_author.name_first Shang-Te _pdbx_contact_author.name_last Hsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7231-0185 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hsiao, L.C.' 1 0009-0001-1945-0744 'Lee, C.H.' 2 0000-0002-7470-3249 'Hsu, M.F.' 3 0000-0002-5473-5171 'Hsu, S.T.' 4 0000-0002-7231-0185 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 437 _citation.language ? _citation.page_first 169092 _citation.page_last 169092 _citation.title 'Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2025.169092 _citation.pdbx_database_id_PubMed 40090459 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hsiao, L.C.' 1 ? primary 'Lee, C.H.' 2 ? primary 'Mazmanian, K.' 3 ? primary 'Yoshida, M.' 4 ? primary 'Ito, G.' 5 ? primary 'Murata, T.' 6 ? primary 'Utsunomiya-Tate, N.' 7 ? primary 'Haino, T.' 8 ? primary 'Tate, S.I.' 9 ? primary 'Hsu, S.D.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 4520.087 _entity.pdbx_number_of_molecules 12 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid A4 protein homolog,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta (A4) precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'DAEFRHDSGYEVHHQKLVFFAE(DAS)VGSNKGAIIGLMVGGVVIA' _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id CC,BB,DD,EE,FF,AA,A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 DAS n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n 1 41 ILE n 1 42 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? CC . n A 1 2 ALA 2 2 ? ? ? CC . n A 1 3 GLU 3 3 ? ? ? CC . n A 1 4 PHE 4 4 ? ? ? CC . n A 1 5 ARG 5 5 ? ? ? CC . n A 1 6 HIS 6 6 ? ? ? CC . n A 1 7 ASP 7 7 ? ? ? CC . n A 1 8 SER 8 8 ? ? ? CC . n A 1 9 GLY 9 9 9 GLY GLY CC . n A 1 10 TYR 10 10 10 TYR TYR CC . n A 1 11 GLU 11 11 11 GLU GLU CC . n A 1 12 VAL 12 12 12 VAL VAL CC . n A 1 13 HIS 13 13 13 HIS HIS CC . n A 1 14 HIS 14 14 14 HIS HIS CC . n A 1 15 GLN 15 15 15 GLN GLN CC . n A 1 16 LYS 16 16 16 LYS LYS CC . n A 1 17 LEU 17 17 17 LEU LEU CC . n A 1 18 VAL 18 18 18 VAL VAL CC . n A 1 19 PHE 19 19 19 PHE PHE CC . n A 1 20 PHE 20 20 20 PHE PHE CC . n A 1 21 ALA 21 21 21 ALA ALA CC . n A 1 22 GLU 22 22 22 GLU GLU CC . n A 1 23 DAS 23 23 23 DAS DAS CC . n A 1 24 VAL 24 24 24 VAL VAL CC . n A 1 25 GLY 25 25 25 GLY GLY CC . n A 1 26 SER 26 26 26 SER SER CC . n A 1 27 ASN 27 27 27 ASN ASN CC . n A 1 28 LYS 28 28 28 LYS LYS CC . n A 1 29 GLY 29 29 29 GLY GLY CC . n A 1 30 ALA 30 30 30 ALA ALA CC . n A 1 31 ILE 31 31 31 ILE ILE CC . n A 1 32 ILE 32 32 32 ILE ILE CC . n A 1 33 GLY 33 33 33 GLY GLY CC . n A 1 34 LEU 34 34 34 LEU LEU CC . n A 1 35 MET 35 35 35 MET MET CC . n A 1 36 VAL 36 36 36 VAL VAL CC . n A 1 37 GLY 37 37 37 GLY GLY CC . n A 1 38 GLY 38 38 38 GLY GLY CC . n A 1 39 VAL 39 39 39 VAL VAL CC . n A 1 40 VAL 40 40 40 VAL VAL CC . n A 1 41 ILE 41 41 41 ILE ILE CC . n A 1 42 ALA 42 42 42 ALA ALA CC . n B 1 1 ASP 1 1 ? ? ? BB . n B 1 2 ALA 2 2 ? ? ? BB . n B 1 3 GLU 3 3 ? ? ? BB . n B 1 4 PHE 4 4 ? ? ? BB . n B 1 5 ARG 5 5 ? ? ? BB . n B 1 6 HIS 6 6 ? ? ? BB . n B 1 7 ASP 7 7 ? ? ? BB . n B 1 8 SER 8 8 ? ? ? BB . n B 1 9 GLY 9 9 9 GLY GLY BB . n B 1 10 TYR 10 10 10 TYR TYR BB . n B 1 11 GLU 11 11 11 GLU GLU BB . n B 1 12 VAL 12 12 12 VAL VAL BB . n B 1 13 HIS 13 13 13 HIS HIS BB . n B 1 14 HIS 14 14 14 HIS HIS BB . n B 1 15 GLN 15 15 15 GLN GLN BB . n B 1 16 LYS 16 16 16 LYS LYS BB . n B 1 17 LEU 17 17 17 LEU LEU BB . n B 1 18 VAL 18 18 18 VAL VAL BB . n B 1 19 PHE 19 19 19 PHE PHE BB . n B 1 20 PHE 20 20 20 PHE PHE BB . n B 1 21 ALA 21 21 21 ALA ALA BB . n B 1 22 GLU 22 22 22 GLU GLU BB . n B 1 23 DAS 23 23 23 DAS DAS BB . n B 1 24 VAL 24 24 24 VAL VAL BB . n B 1 25 GLY 25 25 25 GLY GLY BB . n B 1 26 SER 26 26 26 SER SER BB . n B 1 27 ASN 27 27 27 ASN ASN BB . n B 1 28 LYS 28 28 28 LYS LYS BB . n B 1 29 GLY 29 29 29 GLY GLY BB . n B 1 30 ALA 30 30 30 ALA ALA BB . n B 1 31 ILE 31 31 31 ILE ILE BB . n B 1 32 ILE 32 32 32 ILE ILE BB . n B 1 33 GLY 33 33 33 GLY GLY BB . n B 1 34 LEU 34 34 34 LEU LEU BB . n B 1 35 MET 35 35 35 MET MET BB . n B 1 36 VAL 36 36 36 VAL VAL BB . n B 1 37 GLY 37 37 37 GLY GLY BB . n B 1 38 GLY 38 38 38 GLY GLY BB . n B 1 39 VAL 39 39 39 VAL VAL BB . n B 1 40 VAL 40 40 40 VAL VAL BB . n B 1 41 ILE 41 41 41 ILE ILE BB . n B 1 42 ALA 42 42 42 ALA ALA BB . n C 1 1 ASP 1 1 ? ? ? DD . n C 1 2 ALA 2 2 ? ? ? DD . n C 1 3 GLU 3 3 ? ? ? DD . n C 1 4 PHE 4 4 ? ? ? DD . n C 1 5 ARG 5 5 ? ? ? DD . n C 1 6 HIS 6 6 ? ? ? DD . n C 1 7 ASP 7 7 ? ? ? DD . n C 1 8 SER 8 8 ? ? ? DD . n C 1 9 GLY 9 9 9 GLY GLY DD . n C 1 10 TYR 10 10 10 TYR TYR DD . n C 1 11 GLU 11 11 11 GLU GLU DD . n C 1 12 VAL 12 12 12 VAL VAL DD . n C 1 13 HIS 13 13 13 HIS HIS DD . n C 1 14 HIS 14 14 14 HIS HIS DD . n C 1 15 GLN 15 15 15 GLN GLN DD . n C 1 16 LYS 16 16 16 LYS LYS DD . n C 1 17 LEU 17 17 17 LEU LEU DD . n C 1 18 VAL 18 18 18 VAL VAL DD . n C 1 19 PHE 19 19 19 PHE PHE DD . n C 1 20 PHE 20 20 20 PHE PHE DD . n C 1 21 ALA 21 21 21 ALA ALA DD . n C 1 22 GLU 22 22 22 GLU GLU DD . n C 1 23 DAS 23 23 23 DAS DAS DD . n C 1 24 VAL 24 24 24 VAL VAL DD . n C 1 25 GLY 25 25 25 GLY GLY DD . n C 1 26 SER 26 26 26 SER SER DD . n C 1 27 ASN 27 27 27 ASN ASN DD . n C 1 28 LYS 28 28 28 LYS LYS DD . n C 1 29 GLY 29 29 29 GLY GLY DD . n C 1 30 ALA 30 30 30 ALA ALA DD . n C 1 31 ILE 31 31 31 ILE ILE DD . n C 1 32 ILE 32 32 32 ILE ILE DD . n C 1 33 GLY 33 33 33 GLY GLY DD . n C 1 34 LEU 34 34 34 LEU LEU DD . n C 1 35 MET 35 35 35 MET MET DD . n C 1 36 VAL 36 36 36 VAL VAL DD . n C 1 37 GLY 37 37 37 GLY GLY DD . n C 1 38 GLY 38 38 38 GLY GLY DD . n C 1 39 VAL 39 39 39 VAL VAL DD . n C 1 40 VAL 40 40 40 VAL VAL DD . n C 1 41 ILE 41 41 41 ILE ILE DD . n C 1 42 ALA 42 42 42 ALA ALA DD . n D 1 1 ASP 1 1 ? ? ? EE . n D 1 2 ALA 2 2 ? ? ? EE . n D 1 3 GLU 3 3 ? ? ? EE . n D 1 4 PHE 4 4 ? ? ? EE . n D 1 5 ARG 5 5 ? ? ? EE . n D 1 6 HIS 6 6 ? ? ? EE . n D 1 7 ASP 7 7 ? ? ? EE . n D 1 8 SER 8 8 ? ? ? EE . n D 1 9 GLY 9 9 9 GLY GLY EE . n D 1 10 TYR 10 10 10 TYR TYR EE . n D 1 11 GLU 11 11 11 GLU GLU EE . n D 1 12 VAL 12 12 12 VAL VAL EE . n D 1 13 HIS 13 13 13 HIS HIS EE . n D 1 14 HIS 14 14 14 HIS HIS EE . n D 1 15 GLN 15 15 15 GLN GLN EE . n D 1 16 LYS 16 16 16 LYS LYS EE . n D 1 17 LEU 17 17 17 LEU LEU EE . n D 1 18 VAL 18 18 18 VAL VAL EE . n D 1 19 PHE 19 19 19 PHE PHE EE . n D 1 20 PHE 20 20 20 PHE PHE EE . n D 1 21 ALA 21 21 21 ALA ALA EE . n D 1 22 GLU 22 22 22 GLU GLU EE . n D 1 23 DAS 23 23 23 DAS DAS EE . n D 1 24 VAL 24 24 24 VAL VAL EE . n D 1 25 GLY 25 25 25 GLY GLY EE . n D 1 26 SER 26 26 26 SER SER EE . n D 1 27 ASN 27 27 27 ASN ASN EE . n D 1 28 LYS 28 28 28 LYS LYS EE . n D 1 29 GLY 29 29 29 GLY GLY EE . n D 1 30 ALA 30 30 30 ALA ALA EE . n D 1 31 ILE 31 31 31 ILE ILE EE . n D 1 32 ILE 32 32 32 ILE ILE EE . n D 1 33 GLY 33 33 33 GLY GLY EE . n D 1 34 LEU 34 34 34 LEU LEU EE . n D 1 35 MET 35 35 35 MET MET EE . n D 1 36 VAL 36 36 36 VAL VAL EE . n D 1 37 GLY 37 37 37 GLY GLY EE . n D 1 38 GLY 38 38 38 GLY GLY EE . n D 1 39 VAL 39 39 39 VAL VAL EE . n D 1 40 VAL 40 40 40 VAL VAL EE . n D 1 41 ILE 41 41 41 ILE ILE EE . n D 1 42 ALA 42 42 42 ALA ALA EE . n E 1 1 ASP 1 1 ? ? ? FF . n E 1 2 ALA 2 2 ? ? ? FF . n E 1 3 GLU 3 3 ? ? ? FF . n E 1 4 PHE 4 4 ? ? ? FF . n E 1 5 ARG 5 5 ? ? ? FF . n E 1 6 HIS 6 6 ? ? ? FF . n E 1 7 ASP 7 7 ? ? ? FF . n E 1 8 SER 8 8 ? ? ? FF . n E 1 9 GLY 9 9 9 GLY GLY FF . n E 1 10 TYR 10 10 10 TYR TYR FF . n E 1 11 GLU 11 11 11 GLU GLU FF . n E 1 12 VAL 12 12 12 VAL VAL FF . n E 1 13 HIS 13 13 13 HIS HIS FF . n E 1 14 HIS 14 14 14 HIS HIS FF . n E 1 15 GLN 15 15 15 GLN GLN FF . n E 1 16 LYS 16 16 16 LYS LYS FF . n E 1 17 LEU 17 17 17 LEU LEU FF . n E 1 18 VAL 18 18 18 VAL VAL FF . n E 1 19 PHE 19 19 19 PHE PHE FF . n E 1 20 PHE 20 20 20 PHE PHE FF . n E 1 21 ALA 21 21 21 ALA ALA FF . n E 1 22 GLU 22 22 22 GLU GLU FF . n E 1 23 DAS 23 23 23 DAS DAS FF . n E 1 24 VAL 24 24 24 VAL VAL FF . n E 1 25 GLY 25 25 25 GLY GLY FF . n E 1 26 SER 26 26 26 SER SER FF . n E 1 27 ASN 27 27 27 ASN ASN FF . n E 1 28 LYS 28 28 28 LYS LYS FF . n E 1 29 GLY 29 29 29 GLY GLY FF . n E 1 30 ALA 30 30 30 ALA ALA FF . n E 1 31 ILE 31 31 31 ILE ILE FF . n E 1 32 ILE 32 32 32 ILE ILE FF . n E 1 33 GLY 33 33 33 GLY GLY FF . n E 1 34 LEU 34 34 34 LEU LEU FF . n E 1 35 MET 35 35 35 MET MET FF . n E 1 36 VAL 36 36 36 VAL VAL FF . n E 1 37 GLY 37 37 37 GLY GLY FF . n E 1 38 GLY 38 38 38 GLY GLY FF . n E 1 39 VAL 39 39 39 VAL VAL FF . n E 1 40 VAL 40 40 40 VAL VAL FF . n E 1 41 ILE 41 41 41 ILE ILE FF . n E 1 42 ALA 42 42 42 ALA ALA FF . n F 1 1 ASP 1 1 ? ? ? AA . n F 1 2 ALA 2 2 ? ? ? AA . n F 1 3 GLU 3 3 ? ? ? AA . n F 1 4 PHE 4 4 ? ? ? AA . n F 1 5 ARG 5 5 ? ? ? AA . n F 1 6 HIS 6 6 ? ? ? AA . n F 1 7 ASP 7 7 ? ? ? AA . n F 1 8 SER 8 8 ? ? ? AA . n F 1 9 GLY 9 9 9 GLY GLY AA . n F 1 10 TYR 10 10 10 TYR TYR AA . n F 1 11 GLU 11 11 11 GLU GLU AA . n F 1 12 VAL 12 12 12 VAL VAL AA . n F 1 13 HIS 13 13 13 HIS HIS AA . n F 1 14 HIS 14 14 14 HIS HIS AA . n F 1 15 GLN 15 15 15 GLN GLN AA . n F 1 16 LYS 16 16 16 LYS LYS AA . n F 1 17 LEU 17 17 17 LEU LEU AA . n F 1 18 VAL 18 18 18 VAL VAL AA . n F 1 19 PHE 19 19 19 PHE PHE AA . n F 1 20 PHE 20 20 20 PHE PHE AA . n F 1 21 ALA 21 21 21 ALA ALA AA . n F 1 22 GLU 22 22 22 GLU GLU AA . n F 1 23 DAS 23 23 23 DAS DAS AA . n F 1 24 VAL 24 24 24 VAL VAL AA . n F 1 25 GLY 25 25 25 GLY GLY AA . n F 1 26 SER 26 26 26 SER SER AA . n F 1 27 ASN 27 27 27 ASN ASN AA . n F 1 28 LYS 28 28 28 LYS LYS AA . n F 1 29 GLY 29 29 29 GLY GLY AA . n F 1 30 ALA 30 30 30 ALA ALA AA . n F 1 31 ILE 31 31 31 ILE ILE AA . n F 1 32 ILE 32 32 32 ILE ILE AA . n F 1 33 GLY 33 33 33 GLY GLY AA . n F 1 34 LEU 34 34 34 LEU LEU AA . n F 1 35 MET 35 35 35 MET MET AA . n F 1 36 VAL 36 36 36 VAL VAL AA . n F 1 37 GLY 37 37 37 GLY GLY AA . n F 1 38 GLY 38 38 38 GLY GLY AA . n F 1 39 VAL 39 39 39 VAL VAL AA . n F 1 40 VAL 40 40 40 VAL VAL AA . n F 1 41 ILE 41 41 41 ILE ILE AA . n F 1 42 ALA 42 42 42 ALA ALA AA . n G 1 1 ASP 1 1 ? ? ? A . n G 1 2 ALA 2 2 ? ? ? A . n G 1 3 GLU 3 3 ? ? ? A . n G 1 4 PHE 4 4 ? ? ? A . n G 1 5 ARG 5 5 ? ? ? A . n G 1 6 HIS 6 6 ? ? ? A . n G 1 7 ASP 7 7 ? ? ? A . n G 1 8 SER 8 8 ? ? ? A . n G 1 9 GLY 9 9 9 GLY GLY A . n G 1 10 TYR 10 10 10 TYR TYR A . n G 1 11 GLU 11 11 11 GLU GLU A . n G 1 12 VAL 12 12 12 VAL VAL A . n G 1 13 HIS 13 13 13 HIS HIS A . n G 1 14 HIS 14 14 14 HIS HIS A . n G 1 15 GLN 15 15 15 GLN GLN A . n G 1 16 LYS 16 16 16 LYS LYS A . n G 1 17 LEU 17 17 17 LEU LEU A . n G 1 18 VAL 18 18 18 VAL VAL A . n G 1 19 PHE 19 19 19 PHE PHE A . n G 1 20 PHE 20 20 20 PHE PHE A . n G 1 21 ALA 21 21 21 ALA ALA A . n G 1 22 GLU 22 22 22 GLU GLU A . n G 1 23 DAS 23 23 23 DAS DAS A . n G 1 24 VAL 24 24 24 VAL VAL A . n G 1 25 GLY 25 25 25 GLY GLY A . n G 1 26 SER 26 26 26 SER SER A . n G 1 27 ASN 27 27 27 ASN ASN A . n G 1 28 LYS 28 28 28 LYS LYS A . n G 1 29 GLY 29 29 29 GLY GLY A . n G 1 30 ALA 30 30 30 ALA ALA A . n G 1 31 ILE 31 31 31 ILE ILE A . n G 1 32 ILE 32 32 32 ILE ILE A . n G 1 33 GLY 33 33 33 GLY GLY A . n G 1 34 LEU 34 34 34 LEU LEU A . n G 1 35 MET 35 35 35 MET MET A . n G 1 36 VAL 36 36 36 VAL VAL A . n G 1 37 GLY 37 37 37 GLY GLY A . n G 1 38 GLY 38 38 38 GLY GLY A . n G 1 39 VAL 39 39 39 VAL VAL A . n G 1 40 VAL 40 40 40 VAL VAL A . n G 1 41 ILE 41 41 41 ILE ILE A . n G 1 42 ALA 42 42 42 ALA ALA A . n H 1 1 ASP 1 1 ? ? ? B . n H 1 2 ALA 2 2 ? ? ? B . n H 1 3 GLU 3 3 ? ? ? B . n H 1 4 PHE 4 4 ? ? ? B . n H 1 5 ARG 5 5 ? ? ? B . n H 1 6 HIS 6 6 ? ? ? B . n H 1 7 ASP 7 7 ? ? ? B . n H 1 8 SER 8 8 ? ? ? B . n H 1 9 GLY 9 9 9 GLY GLY B . n H 1 10 TYR 10 10 10 TYR TYR B . n H 1 11 GLU 11 11 11 GLU GLU B . n H 1 12 VAL 12 12 12 VAL VAL B . n H 1 13 HIS 13 13 13 HIS HIS B . n H 1 14 HIS 14 14 14 HIS HIS B . n H 1 15 GLN 15 15 15 GLN GLN B . n H 1 16 LYS 16 16 16 LYS LYS B . n H 1 17 LEU 17 17 17 LEU LEU B . n H 1 18 VAL 18 18 18 VAL VAL B . n H 1 19 PHE 19 19 19 PHE PHE B . n H 1 20 PHE 20 20 20 PHE PHE B . n H 1 21 ALA 21 21 21 ALA ALA B . n H 1 22 GLU 22 22 22 GLU GLU B . n H 1 23 DAS 23 23 23 DAS DAS B . n H 1 24 VAL 24 24 24 VAL VAL B . n H 1 25 GLY 25 25 25 GLY GLY B . n H 1 26 SER 26 26 26 SER SER B . n H 1 27 ASN 27 27 27 ASN ASN B . n H 1 28 LYS 28 28 28 LYS LYS B . n H 1 29 GLY 29 29 29 GLY GLY B . n H 1 30 ALA 30 30 30 ALA ALA B . n H 1 31 ILE 31 31 31 ILE ILE B . n H 1 32 ILE 32 32 32 ILE ILE B . n H 1 33 GLY 33 33 33 GLY GLY B . n H 1 34 LEU 34 34 34 LEU LEU B . n H 1 35 MET 35 35 35 MET MET B . n H 1 36 VAL 36 36 36 VAL VAL B . n H 1 37 GLY 37 37 37 GLY GLY B . n H 1 38 GLY 38 38 38 GLY GLY B . n H 1 39 VAL 39 39 39 VAL VAL B . n H 1 40 VAL 40 40 40 VAL VAL B . n H 1 41 ILE 41 41 41 ILE ILE B . n H 1 42 ALA 42 42 42 ALA ALA B . n I 1 1 ASP 1 1 ? ? ? C . n I 1 2 ALA 2 2 ? ? ? C . n I 1 3 GLU 3 3 ? ? ? C . n I 1 4 PHE 4 4 ? ? ? C . n I 1 5 ARG 5 5 ? ? ? C . n I 1 6 HIS 6 6 ? ? ? C . n I 1 7 ASP 7 7 ? ? ? C . n I 1 8 SER 8 8 ? ? ? C . n I 1 9 GLY 9 9 9 GLY GLY C . n I 1 10 TYR 10 10 10 TYR TYR C . n I 1 11 GLU 11 11 11 GLU GLU C . n I 1 12 VAL 12 12 12 VAL VAL C . n I 1 13 HIS 13 13 13 HIS HIS C . n I 1 14 HIS 14 14 14 HIS HIS C . n I 1 15 GLN 15 15 15 GLN GLN C . n I 1 16 LYS 16 16 16 LYS LYS C . n I 1 17 LEU 17 17 17 LEU LEU C . n I 1 18 VAL 18 18 18 VAL VAL C . n I 1 19 PHE 19 19 19 PHE PHE C . n I 1 20 PHE 20 20 20 PHE PHE C . n I 1 21 ALA 21 21 21 ALA ALA C . n I 1 22 GLU 22 22 22 GLU GLU C . n I 1 23 DAS 23 23 23 DAS DAS C . n I 1 24 VAL 24 24 24 VAL VAL C . n I 1 25 GLY 25 25 25 GLY GLY C . n I 1 26 SER 26 26 26 SER SER C . n I 1 27 ASN 27 27 27 ASN ASN C . n I 1 28 LYS 28 28 28 LYS LYS C . n I 1 29 GLY 29 29 29 GLY GLY C . n I 1 30 ALA 30 30 30 ALA ALA C . n I 1 31 ILE 31 31 31 ILE ILE C . n I 1 32 ILE 32 32 32 ILE ILE C . n I 1 33 GLY 33 33 33 GLY GLY C . n I 1 34 LEU 34 34 34 LEU LEU C . n I 1 35 MET 35 35 35 MET MET C . n I 1 36 VAL 36 36 36 VAL VAL C . n I 1 37 GLY 37 37 37 GLY GLY C . n I 1 38 GLY 38 38 38 GLY GLY C . n I 1 39 VAL 39 39 39 VAL VAL C . n I 1 40 VAL 40 40 40 VAL VAL C . n I 1 41 ILE 41 41 41 ILE ILE C . n I 1 42 ALA 42 42 42 ALA ALA C . n J 1 1 ASP 1 1 ? ? ? D . n J 1 2 ALA 2 2 ? ? ? D . n J 1 3 GLU 3 3 ? ? ? D . n J 1 4 PHE 4 4 ? ? ? D . n J 1 5 ARG 5 5 ? ? ? D . n J 1 6 HIS 6 6 ? ? ? D . n J 1 7 ASP 7 7 ? ? ? D . n J 1 8 SER 8 8 ? ? ? D . n J 1 9 GLY 9 9 9 GLY GLY D . n J 1 10 TYR 10 10 10 TYR TYR D . n J 1 11 GLU 11 11 11 GLU GLU D . n J 1 12 VAL 12 12 12 VAL VAL D . n J 1 13 HIS 13 13 13 HIS HIS D . n J 1 14 HIS 14 14 14 HIS HIS D . n J 1 15 GLN 15 15 15 GLN GLN D . n J 1 16 LYS 16 16 16 LYS LYS D . n J 1 17 LEU 17 17 17 LEU LEU D . n J 1 18 VAL 18 18 18 VAL VAL D . n J 1 19 PHE 19 19 19 PHE PHE D . n J 1 20 PHE 20 20 20 PHE PHE D . n J 1 21 ALA 21 21 21 ALA ALA D . n J 1 22 GLU 22 22 22 GLU GLU D . n J 1 23 DAS 23 23 23 DAS DAS D . n J 1 24 VAL 24 24 24 VAL VAL D . n J 1 25 GLY 25 25 25 GLY GLY D . n J 1 26 SER 26 26 26 SER SER D . n J 1 27 ASN 27 27 27 ASN ASN D . n J 1 28 LYS 28 28 28 LYS LYS D . n J 1 29 GLY 29 29 29 GLY GLY D . n J 1 30 ALA 30 30 30 ALA ALA D . n J 1 31 ILE 31 31 31 ILE ILE D . n J 1 32 ILE 32 32 32 ILE ILE D . n J 1 33 GLY 33 33 33 GLY GLY D . n J 1 34 LEU 34 34 34 LEU LEU D . n J 1 35 MET 35 35 35 MET MET D . n J 1 36 VAL 36 36 36 VAL VAL D . n J 1 37 GLY 37 37 37 GLY GLY D . n J 1 38 GLY 38 38 38 GLY GLY D . n J 1 39 VAL 39 39 39 VAL VAL D . n J 1 40 VAL 40 40 40 VAL VAL D . n J 1 41 ILE 41 41 41 ILE ILE D . n J 1 42 ALA 42 42 42 ALA ALA D . n K 1 1 ASP 1 1 ? ? ? E . n K 1 2 ALA 2 2 ? ? ? E . n K 1 3 GLU 3 3 ? ? ? E . n K 1 4 PHE 4 4 ? ? ? E . n K 1 5 ARG 5 5 ? ? ? E . n K 1 6 HIS 6 6 ? ? ? E . n K 1 7 ASP 7 7 ? ? ? E . n K 1 8 SER 8 8 ? ? ? E . n K 1 9 GLY 9 9 9 GLY GLY E . n K 1 10 TYR 10 10 10 TYR TYR E . n K 1 11 GLU 11 11 11 GLU GLU E . n K 1 12 VAL 12 12 12 VAL VAL E . n K 1 13 HIS 13 13 13 HIS HIS E . n K 1 14 HIS 14 14 14 HIS HIS E . n K 1 15 GLN 15 15 15 GLN GLN E . n K 1 16 LYS 16 16 16 LYS LYS E . n K 1 17 LEU 17 17 17 LEU LEU E . n K 1 18 VAL 18 18 18 VAL VAL E . n K 1 19 PHE 19 19 19 PHE PHE E . n K 1 20 PHE 20 20 20 PHE PHE E . n K 1 21 ALA 21 21 21 ALA ALA E . n K 1 22 GLU 22 22 22 GLU GLU E . n K 1 23 DAS 23 23 23 DAS DAS E . n K 1 24 VAL 24 24 24 VAL VAL E . n K 1 25 GLY 25 25 25 GLY GLY E . n K 1 26 SER 26 26 26 SER SER E . n K 1 27 ASN 27 27 27 ASN ASN E . n K 1 28 LYS 28 28 28 LYS LYS E . n K 1 29 GLY 29 29 29 GLY GLY E . n K 1 30 ALA 30 30 30 ALA ALA E . n K 1 31 ILE 31 31 31 ILE ILE E . n K 1 32 ILE 32 32 32 ILE ILE E . n K 1 33 GLY 33 33 33 GLY GLY E . n K 1 34 LEU 34 34 34 LEU LEU E . n K 1 35 MET 35 35 35 MET MET E . n K 1 36 VAL 36 36 36 VAL VAL E . n K 1 37 GLY 37 37 37 GLY GLY E . n K 1 38 GLY 38 38 38 GLY GLY E . n K 1 39 VAL 39 39 39 VAL VAL E . n K 1 40 VAL 40 40 40 VAL VAL E . n K 1 41 ILE 41 41 41 ILE ILE E . n K 1 42 ALA 42 42 42 ALA ALA E . n L 1 1 ASP 1 1 ? ? ? F . n L 1 2 ALA 2 2 ? ? ? F . n L 1 3 GLU 3 3 ? ? ? F . n L 1 4 PHE 4 4 ? ? ? F . n L 1 5 ARG 5 5 ? ? ? F . n L 1 6 HIS 6 6 ? ? ? F . n L 1 7 ASP 7 7 ? ? ? F . n L 1 8 SER 8 8 ? ? ? F . n L 1 9 GLY 9 9 9 GLY GLY F . n L 1 10 TYR 10 10 10 TYR TYR F . n L 1 11 GLU 11 11 11 GLU GLU F . n L 1 12 VAL 12 12 12 VAL VAL F . n L 1 13 HIS 13 13 13 HIS HIS F . n L 1 14 HIS 14 14 14 HIS HIS F . n L 1 15 GLN 15 15 15 GLN GLN F . n L 1 16 LYS 16 16 16 LYS LYS F . n L 1 17 LEU 17 17 17 LEU LEU F . n L 1 18 VAL 18 18 18 VAL VAL F . n L 1 19 PHE 19 19 19 PHE PHE F . n L 1 20 PHE 20 20 20 PHE PHE F . n L 1 21 ALA 21 21 21 ALA ALA F . n L 1 22 GLU 22 22 22 GLU GLU F . n L 1 23 DAS 23 23 23 DAS DAS F . n L 1 24 VAL 24 24 24 VAL VAL F . n L 1 25 GLY 25 25 25 GLY GLY F . n L 1 26 SER 26 26 26 SER SER F . n L 1 27 ASN 27 27 27 ASN ASN F . n L 1 28 LYS 28 28 28 LYS LYS F . n L 1 29 GLY 29 29 29 GLY GLY F . n L 1 30 ALA 30 30 30 ALA ALA F . n L 1 31 ILE 31 31 31 ILE ILE F . n L 1 32 ILE 32 32 32 ILE ILE F . n L 1 33 GLY 33 33 33 GLY GLY F . n L 1 34 LEU 34 34 34 LEU LEU F . n L 1 35 MET 35 35 35 MET MET F . n L 1 36 VAL 36 36 36 VAL VAL F . n L 1 37 GLY 37 37 37 GLY GLY F . n L 1 38 GLY 38 38 38 GLY GLY F . n L 1 39 VAL 39 39 39 VAL VAL F . n L 1 40 VAL 40 40 40 VAL VAL F . n L 1 41 ILE 41 41 41 ILE ILE F . n L 1 42 ALA 42 42 42 ALA ALA F . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9JB0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JB0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9JB0 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3060 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.364 ? 4116 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.428 ? 444 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.055 ? 468 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 528 ? f_plane_restr ? ? # _struct.entry_id 9JB0 _struct.title 'Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JB0 _struct_keywords.text 'aggregation, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 672 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JB0 CC 1 ? 42 ? P05067 672 ? 713 ? 1 42 2 1 9JB0 BB 1 ? 42 ? P05067 672 ? 713 ? 1 42 3 1 9JB0 DD 1 ? 42 ? P05067 672 ? 713 ? 1 42 4 1 9JB0 EE 1 ? 42 ? P05067 672 ? 713 ? 1 42 5 1 9JB0 FF 1 ? 42 ? P05067 672 ? 713 ? 1 42 6 1 9JB0 AA 1 ? 42 ? P05067 672 ? 713 ? 1 42 7 1 9JB0 A 1 ? 42 ? P05067 672 ? 713 ? 1 42 8 1 9JB0 B 1 ? 42 ? P05067 672 ? 713 ? 1 42 9 1 9JB0 C 1 ? 42 ? P05067 672 ? 713 ? 1 42 10 1 9JB0 D 1 ? 42 ? P05067 672 ? 713 ? 1 42 11 1 9JB0 E 1 ? 42 ? P05067 672 ? 713 ? 1 42 12 1 9JB0 F 1 ? 42 ? P05067 672 ? 713 ? 1 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9JB0 DAS CC 23 ? UNP P05067 ASP 694 'modified residue' 23 1 2 9JB0 DAS BB 23 ? UNP P05067 ASP 694 'modified residue' 23 2 3 9JB0 DAS DD 23 ? UNP P05067 ASP 694 'modified residue' 23 3 4 9JB0 DAS EE 23 ? UNP P05067 ASP 694 'modified residue' 23 4 5 9JB0 DAS FF 23 ? UNP P05067 ASP 694 'modified residue' 23 5 6 9JB0 DAS AA 23 ? UNP P05067 ASP 694 'modified residue' 23 6 7 9JB0 DAS A 23 ? UNP P05067 ASP 694 'modified residue' 23 7 8 9JB0 DAS B 23 ? UNP P05067 ASP 694 'modified residue' 23 8 9 9JB0 DAS C 23 ? UNP P05067 ASP 694 'modified residue' 23 9 10 9JB0 DAS D 23 ? UNP P05067 ASP 694 'modified residue' 23 10 11 9JB0 DAS E 23 ? UNP P05067 ASP 694 'modified residue' 23 11 12 9JB0 DAS F 23 ? UNP P05067 ASP 694 'modified residue' 23 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 22 C ? ? ? 1_555 A DAS 23 N ? ? CC GLU 22 CC DAS 23 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A DAS 23 C ? ? ? 1_555 A VAL 24 N ? ? CC DAS 23 CC VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B GLU 22 C ? ? ? 1_555 B DAS 23 N ? ? BB GLU 22 BB DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? B DAS 23 C ? ? ? 1_555 B VAL 24 N ? ? BB DAS 23 BB VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? C GLU 22 C ? ? ? 1_555 C DAS 23 N ? ? DD GLU 22 DD DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? C DAS 23 C ? ? ? 1_555 C VAL 24 N ? ? DD DAS 23 DD VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? D GLU 22 C ? ? ? 1_555 D DAS 23 N ? ? EE GLU 22 EE DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? D DAS 23 C ? ? ? 1_555 D VAL 24 N ? ? EE DAS 23 EE VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? E GLU 22 C ? ? ? 1_555 E DAS 23 N ? ? FF GLU 22 FF DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? E DAS 23 C ? ? ? 1_555 E VAL 24 N ? ? FF DAS 23 FF VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? F GLU 22 C ? ? ? 1_555 F DAS 23 N ? ? AA GLU 22 AA DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? F DAS 23 C ? ? ? 1_555 F VAL 24 N ? ? AA DAS 23 AA VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? G GLU 22 C ? ? ? 1_555 G DAS 23 N ? ? A GLU 22 A DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale14 covale both ? G DAS 23 C ? ? ? 1_555 G VAL 24 N ? ? A DAS 23 A VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale15 covale both ? H GLU 22 C ? ? ? 1_555 H DAS 23 N ? ? B GLU 22 B DAS 23 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? H DAS 23 C ? ? ? 1_555 H VAL 24 N ? ? B DAS 23 B VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? I GLU 22 C ? ? ? 1_555 I DAS 23 N ? ? C GLU 22 C DAS 23 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? I DAS 23 C ? ? ? 1_555 I VAL 24 N ? ? C DAS 23 C VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale19 covale both ? J GLU 22 C ? ? ? 1_555 J DAS 23 N ? ? D GLU 22 D DAS 23 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale20 covale both ? J DAS 23 C ? ? ? 1_555 J VAL 24 N ? ? D DAS 23 D VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? K GLU 22 C ? ? ? 1_555 K DAS 23 N ? ? E GLU 22 E DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale22 covale both ? K DAS 23 C ? ? ? 1_555 K VAL 24 N ? ? E DAS 23 E VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale23 covale both ? L GLU 22 C ? ? ? 1_555 L DAS 23 N ? ? F GLU 22 F DAS 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? L DAS 23 C ? ? ? 1_555 L VAL 24 N ? ? F DAS 23 F VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 6 ? AA4 ? 6 ? AA5 ? 6 ? AA6 ? 6 ? AA7 ? 6 ? AA8 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA3 5 6 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA4 5 6 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA5 5 6 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA6 5 6 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA7 5 6 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA8 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR E 10 ? HIS E 13 ? TYR FF 10 HIS FF 13 AA1 2 TYR D 10 ? HIS D 13 ? TYR EE 10 HIS EE 13 AA1 3 TYR C 10 ? HIS C 13 ? TYR DD 10 HIS DD 13 AA1 4 TYR A 10 ? HIS A 13 ? TYR CC 10 HIS CC 13 AA1 5 TYR B 10 ? HIS B 13 ? TYR BB 10 HIS BB 13 AA1 6 TYR F 10 ? HIS F 13 ? TYR AA 10 HIS AA 13 AA2 1 GLN E 15 ? ALA E 21 ? GLN FF 15 ALA FF 21 AA2 2 GLN D 15 ? ALA D 21 ? GLN EE 15 ALA EE 21 AA2 3 GLN C 15 ? ALA C 21 ? GLN DD 15 ALA DD 21 AA2 4 GLN A 15 ? ALA A 21 ? GLN CC 15 ALA CC 21 AA2 5 GLN B 15 ? ALA B 21 ? GLN BB 15 ALA BB 21 AA2 6 GLN F 15 ? ALA F 21 ? GLN AA 15 ALA AA 21 AA3 1 ALA E 30 ? ILE E 32 ? ALA FF 30 ILE FF 32 AA3 2 ALA D 30 ? ILE D 32 ? ALA EE 30 ILE EE 32 AA3 3 ALA C 30 ? ILE C 32 ? ALA DD 30 ILE DD 32 AA3 4 ALA A 30 ? ILE A 32 ? ALA CC 30 ILE CC 32 AA3 5 ALA B 30 ? ILE B 32 ? ALA BB 30 ILE BB 32 AA3 6 ALA F 30 ? ILE F 32 ? ALA AA 30 ILE AA 32 AA4 1 LEU E 34 ? ILE E 41 ? LEU FF 34 ILE FF 41 AA4 2 LEU D 34 ? ILE D 41 ? LEU EE 34 ILE EE 41 AA4 3 LEU C 34 ? ILE C 41 ? LEU DD 34 ILE DD 41 AA4 4 LEU A 34 ? ILE A 41 ? LEU CC 34 ILE CC 41 AA4 5 LEU B 34 ? ILE B 41 ? LEU BB 34 ILE BB 41 AA4 6 LEU F 34 ? ILE F 41 ? LEU AA 34 ILE AA 41 AA5 1 TYR G 10 ? HIS G 13 ? TYR A 10 HIS A 13 AA5 2 TYR H 10 ? HIS H 13 ? TYR B 10 HIS B 13 AA5 3 TYR I 10 ? HIS I 13 ? TYR C 10 HIS C 13 AA5 4 TYR J 10 ? HIS J 13 ? TYR D 10 HIS D 13 AA5 5 TYR K 10 ? HIS K 13 ? TYR E 10 HIS E 13 AA5 6 TYR L 10 ? HIS L 13 ? TYR F 10 HIS F 13 AA6 1 GLN G 15 ? ALA G 21 ? GLN A 15 ALA A 21 AA6 2 GLN H 15 ? ALA H 21 ? GLN B 15 ALA B 21 AA6 3 GLN I 15 ? ALA I 21 ? GLN C 15 ALA C 21 AA6 4 GLN J 15 ? ALA J 21 ? GLN D 15 ALA D 21 AA6 5 GLN K 15 ? ALA K 21 ? GLN E 15 ALA E 21 AA6 6 GLN L 15 ? ALA L 21 ? GLN F 15 ALA F 21 AA7 1 ALA G 30 ? ILE G 32 ? ALA A 30 ILE A 32 AA7 2 ALA H 30 ? ILE H 32 ? ALA B 30 ILE B 32 AA7 3 ALA I 30 ? ILE I 32 ? ALA C 30 ILE C 32 AA7 4 ALA J 30 ? ILE J 32 ? ALA D 30 ILE D 32 AA7 5 ALA K 30 ? ILE K 32 ? ALA E 30 ILE E 32 AA7 6 ALA L 30 ? ILE L 32 ? ALA F 30 ILE F 32 AA8 1 LEU G 34 ? ILE G 41 ? LEU A 34 ILE A 41 AA8 2 LEU H 34 ? ILE H 41 ? LEU B 34 ILE B 41 AA8 3 LEU I 34 ? ILE I 41 ? LEU C 34 ILE C 41 AA8 4 LEU J 34 ? ILE J 41 ? LEU D 34 ILE D 41 AA8 5 LEU K 34 ? ILE K 41 ? LEU E 34 ILE E 41 AA8 6 LEU L 34 ? ILE L 41 ? LEU F 34 ILE F 41 # _pdbx_entry_details.entry_id 9JB0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9JB0 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9JB0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 250544 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Class II amyloid-beta 42 fibril containing a D-Asp at position 23' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9JB0 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1400 _em_imaging.nominal_defocus_max 1700 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9JB0 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9JB0 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 CC ASP 1 ? A ASP 1 2 1 Y 1 CC ALA 2 ? A ALA 2 3 1 Y 1 CC GLU 3 ? A GLU 3 4 1 Y 1 CC PHE 4 ? A PHE 4 5 1 Y 1 CC ARG 5 ? A ARG 5 6 1 Y 1 CC HIS 6 ? A HIS 6 7 1 Y 1 CC ASP 7 ? A ASP 7 8 1 Y 1 CC SER 8 ? A SER 8 9 1 Y 1 BB ASP 1 ? B ASP 1 10 1 Y 1 BB ALA 2 ? B ALA 2 11 1 Y 1 BB GLU 3 ? B GLU 3 12 1 Y 1 BB PHE 4 ? B PHE 4 13 1 Y 1 BB ARG 5 ? B ARG 5 14 1 Y 1 BB HIS 6 ? B HIS 6 15 1 Y 1 BB ASP 7 ? B ASP 7 16 1 Y 1 BB SER 8 ? B SER 8 17 1 Y 1 DD ASP 1 ? C ASP 1 18 1 Y 1 DD ALA 2 ? C ALA 2 19 1 Y 1 DD GLU 3 ? C GLU 3 20 1 Y 1 DD PHE 4 ? C PHE 4 21 1 Y 1 DD ARG 5 ? C ARG 5 22 1 Y 1 DD HIS 6 ? C HIS 6 23 1 Y 1 DD ASP 7 ? C ASP 7 24 1 Y 1 DD SER 8 ? C SER 8 25 1 Y 1 EE ASP 1 ? D ASP 1 26 1 Y 1 EE ALA 2 ? D ALA 2 27 1 Y 1 EE GLU 3 ? D GLU 3 28 1 Y 1 EE PHE 4 ? D PHE 4 29 1 Y 1 EE ARG 5 ? D ARG 5 30 1 Y 1 EE HIS 6 ? D HIS 6 31 1 Y 1 EE ASP 7 ? D ASP 7 32 1 Y 1 EE SER 8 ? D SER 8 33 1 Y 1 FF ASP 1 ? E ASP 1 34 1 Y 1 FF ALA 2 ? E ALA 2 35 1 Y 1 FF GLU 3 ? E GLU 3 36 1 Y 1 FF PHE 4 ? E PHE 4 37 1 Y 1 FF ARG 5 ? E ARG 5 38 1 Y 1 FF HIS 6 ? E HIS 6 39 1 Y 1 FF ASP 7 ? E ASP 7 40 1 Y 1 FF SER 8 ? E SER 8 41 1 Y 1 AA ASP 1 ? F ASP 1 42 1 Y 1 AA ALA 2 ? F ALA 2 43 1 Y 1 AA GLU 3 ? F GLU 3 44 1 Y 1 AA PHE 4 ? F PHE 4 45 1 Y 1 AA ARG 5 ? F ARG 5 46 1 Y 1 AA HIS 6 ? F HIS 6 47 1 Y 1 AA ASP 7 ? F ASP 7 48 1 Y 1 AA SER 8 ? F SER 8 49 1 Y 1 A ASP 1 ? G ASP 1 50 1 Y 1 A ALA 2 ? G ALA 2 51 1 Y 1 A GLU 3 ? G GLU 3 52 1 Y 1 A PHE 4 ? G PHE 4 53 1 Y 1 A ARG 5 ? G ARG 5 54 1 Y 1 A HIS 6 ? G HIS 6 55 1 Y 1 A ASP 7 ? G ASP 7 56 1 Y 1 A SER 8 ? G SER 8 57 1 Y 1 B ASP 1 ? H ASP 1 58 1 Y 1 B ALA 2 ? H ALA 2 59 1 Y 1 B GLU 3 ? H GLU 3 60 1 Y 1 B PHE 4 ? H PHE 4 61 1 Y 1 B ARG 5 ? H ARG 5 62 1 Y 1 B HIS 6 ? H HIS 6 63 1 Y 1 B ASP 7 ? H ASP 7 64 1 Y 1 B SER 8 ? H SER 8 65 1 Y 1 C ASP 1 ? I ASP 1 66 1 Y 1 C ALA 2 ? I ALA 2 67 1 Y 1 C GLU 3 ? I GLU 3 68 1 Y 1 C PHE 4 ? I PHE 4 69 1 Y 1 C ARG 5 ? I ARG 5 70 1 Y 1 C HIS 6 ? I HIS 6 71 1 Y 1 C ASP 7 ? I ASP 7 72 1 Y 1 C SER 8 ? I SER 8 73 1 Y 1 D ASP 1 ? J ASP 1 74 1 Y 1 D ALA 2 ? J ALA 2 75 1 Y 1 D GLU 3 ? J GLU 3 76 1 Y 1 D PHE 4 ? J PHE 4 77 1 Y 1 D ARG 5 ? J ARG 5 78 1 Y 1 D HIS 6 ? J HIS 6 79 1 Y 1 D ASP 7 ? J ASP 7 80 1 Y 1 D SER 8 ? J SER 8 81 1 Y 1 E ASP 1 ? K ASP 1 82 1 Y 1 E ALA 2 ? K ALA 2 83 1 Y 1 E GLU 3 ? K GLU 3 84 1 Y 1 E PHE 4 ? K PHE 4 85 1 Y 1 E ARG 5 ? K ARG 5 86 1 Y 1 E HIS 6 ? K HIS 6 87 1 Y 1 E ASP 7 ? K ASP 7 88 1 Y 1 E SER 8 ? K SER 8 89 1 Y 1 F ASP 1 ? L ASP 1 90 1 Y 1 F ALA 2 ? L ALA 2 91 1 Y 1 F GLU 3 ? L GLU 3 92 1 Y 1 F PHE 4 ? L PHE 4 93 1 Y 1 F ARG 5 ? L ARG 5 94 1 Y 1 F HIS 6 ? L HIS 6 95 1 Y 1 F ASP 7 ? L ASP 7 96 1 Y 1 F SER 8 ? L SER 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DAS N N N N 74 DAS CA C N R 75 DAS C C N N 76 DAS O O N N 77 DAS CB C N N 78 DAS CG C N N 79 DAS OD1 O N N 80 DAS OD2 O N N 81 DAS OXT O N N 82 DAS H H N N 83 DAS H2 H N N 84 DAS HA H N N 85 DAS HB2 H N N 86 DAS HB3 H N N 87 DAS HD2 H N N 88 DAS HXT H N N 89 GLN N N N N 90 GLN CA C N S 91 GLN C C N N 92 GLN O O N N 93 GLN CB C N N 94 GLN CG C N N 95 GLN CD C N N 96 GLN OE1 O N N 97 GLN NE2 N N N 98 GLN OXT O N N 99 GLN H H N N 100 GLN H2 H N N 101 GLN HA H N N 102 GLN HB2 H N N 103 GLN HB3 H N N 104 GLN HG2 H N N 105 GLN HG3 H N N 106 GLN HE21 H N N 107 GLN HE22 H N N 108 GLN HXT H N N 109 GLU N N N N 110 GLU CA C N S 111 GLU C C N N 112 GLU O O N N 113 GLU CB C N N 114 GLU CG C N N 115 GLU CD C N N 116 GLU OE1 O N N 117 GLU OE2 O N N 118 GLU OXT O N N 119 GLU H H N N 120 GLU H2 H N N 121 GLU HA H N N 122 GLU HB2 H N N 123 GLU HB3 H N N 124 GLU HG2 H N N 125 GLU HG3 H N N 126 GLU HE2 H N N 127 GLU HXT H N N 128 GLY N N N N 129 GLY CA C N N 130 GLY C C N N 131 GLY O O N N 132 GLY OXT O N N 133 GLY H H N N 134 GLY H2 H N N 135 GLY HA2 H N N 136 GLY HA3 H N N 137 GLY HXT H N N 138 HIS N N N N 139 HIS CA C N S 140 HIS C C N N 141 HIS O O N N 142 HIS CB C N N 143 HIS CG C Y N 144 HIS ND1 N Y N 145 HIS CD2 C Y N 146 HIS CE1 C Y N 147 HIS NE2 N Y N 148 HIS OXT O N N 149 HIS H H N N 150 HIS H2 H N N 151 HIS HA H N N 152 HIS HB2 H N N 153 HIS HB3 H N N 154 HIS HD1 H N N 155 HIS HD2 H N N 156 HIS HE1 H N N 157 HIS HE2 H N N 158 HIS HXT H N N 159 ILE N N N N 160 ILE CA C N S 161 ILE C C N N 162 ILE O O N N 163 ILE CB C N S 164 ILE CG1 C N N 165 ILE CG2 C N N 166 ILE CD1 C N N 167 ILE OXT O N N 168 ILE H H N N 169 ILE H2 H N N 170 ILE HA H N N 171 ILE HB H N N 172 ILE HG12 H N N 173 ILE HG13 H N N 174 ILE HG21 H N N 175 ILE HG22 H N N 176 ILE HG23 H N N 177 ILE HD11 H N N 178 ILE HD12 H N N 179 ILE HD13 H N N 180 ILE HXT H N N 181 LEU N N N N 182 LEU CA C N S 183 LEU C C N N 184 LEU O O N N 185 LEU CB C N N 186 LEU CG C N N 187 LEU CD1 C N N 188 LEU CD2 C N N 189 LEU OXT O N N 190 LEU H H N N 191 LEU H2 H N N 192 LEU HA H N N 193 LEU HB2 H N N 194 LEU HB3 H N N 195 LEU HG H N N 196 LEU HD11 H N N 197 LEU HD12 H N N 198 LEU HD13 H N N 199 LEU HD21 H N N 200 LEU HD22 H N N 201 LEU HD23 H N N 202 LEU HXT H N N 203 LYS N N N N 204 LYS CA C N S 205 LYS C C N N 206 LYS O O N N 207 LYS CB C N N 208 LYS CG C N N 209 LYS CD C N N 210 LYS CE C N N 211 LYS NZ N N N 212 LYS OXT O N N 213 LYS H H N N 214 LYS H2 H N N 215 LYS HA H N N 216 LYS HB2 H N N 217 LYS HB3 H N N 218 LYS HG2 H N N 219 LYS HG3 H N N 220 LYS HD2 H N N 221 LYS HD3 H N N 222 LYS HE2 H N N 223 LYS HE3 H N N 224 LYS HZ1 H N N 225 LYS HZ2 H N N 226 LYS HZ3 H N N 227 LYS HXT H N N 228 MET N N N N 229 MET CA C N S 230 MET C C N N 231 MET O O N N 232 MET CB C N N 233 MET CG C N N 234 MET SD S N N 235 MET CE C N N 236 MET OXT O N N 237 MET H H N N 238 MET H2 H N N 239 MET HA H N N 240 MET HB2 H N N 241 MET HB3 H N N 242 MET HG2 H N N 243 MET HG3 H N N 244 MET HE1 H N N 245 MET HE2 H N N 246 MET HE3 H N N 247 MET HXT H N N 248 PHE N N N N 249 PHE CA C N S 250 PHE C C N N 251 PHE O O N N 252 PHE CB C N N 253 PHE CG C Y N 254 PHE CD1 C Y N 255 PHE CD2 C Y N 256 PHE CE1 C Y N 257 PHE CE2 C Y N 258 PHE CZ C Y N 259 PHE OXT O N N 260 PHE H H N N 261 PHE H2 H N N 262 PHE HA H N N 263 PHE HB2 H N N 264 PHE HB3 H N N 265 PHE HD1 H N N 266 PHE HD2 H N N 267 PHE HE1 H N N 268 PHE HE2 H N N 269 PHE HZ H N N 270 PHE HXT H N N 271 SER N N N N 272 SER CA C N S 273 SER C C N N 274 SER O O N N 275 SER CB C N N 276 SER OG O N N 277 SER OXT O N N 278 SER H H N N 279 SER H2 H N N 280 SER HA H N N 281 SER HB2 H N N 282 SER HB3 H N N 283 SER HG H N N 284 SER HXT H N N 285 TYR N N N N 286 TYR CA C N S 287 TYR C C N N 288 TYR O O N N 289 TYR CB C N N 290 TYR CG C Y N 291 TYR CD1 C Y N 292 TYR CD2 C Y N 293 TYR CE1 C Y N 294 TYR CE2 C Y N 295 TYR CZ C Y N 296 TYR OH O N N 297 TYR OXT O N N 298 TYR H H N N 299 TYR H2 H N N 300 TYR HA H N N 301 TYR HB2 H N N 302 TYR HB3 H N N 303 TYR HD1 H N N 304 TYR HD2 H N N 305 TYR HE1 H N N 306 TYR HE2 H N N 307 TYR HH H N N 308 TYR HXT H N N 309 VAL N N N N 310 VAL CA C N S 311 VAL C C N N 312 VAL O O N N 313 VAL CB C N N 314 VAL CG1 C N N 315 VAL CG2 C N N 316 VAL OXT O N N 317 VAL H H N N 318 VAL H2 H N N 319 VAL HA H N N 320 VAL HB H N N 321 VAL HG11 H N N 322 VAL HG12 H N N 323 VAL HG13 H N N 324 VAL HG21 H N N 325 VAL HG22 H N N 326 VAL HG23 H N N 327 VAL HXT H N N 328 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DAS N CA sing N N 70 DAS N H sing N N 71 DAS N H2 sing N N 72 DAS CA C sing N N 73 DAS CA CB sing N N 74 DAS CA HA sing N N 75 DAS C O doub N N 76 DAS C OXT sing N N 77 DAS CB CG sing N N 78 DAS CB HB2 sing N N 79 DAS CB HB3 sing N N 80 DAS CG OD1 doub N N 81 DAS CG OD2 sing N N 82 DAS OD2 HD2 sing N N 83 DAS OXT HXT sing N N 84 GLN N CA sing N N 85 GLN N H sing N N 86 GLN N H2 sing N N 87 GLN CA C sing N N 88 GLN CA CB sing N N 89 GLN CA HA sing N N 90 GLN C O doub N N 91 GLN C OXT sing N N 92 GLN CB CG sing N N 93 GLN CB HB2 sing N N 94 GLN CB HB3 sing N N 95 GLN CG CD sing N N 96 GLN CG HG2 sing N N 97 GLN CG HG3 sing N N 98 GLN CD OE1 doub N N 99 GLN CD NE2 sing N N 100 GLN NE2 HE21 sing N N 101 GLN NE2 HE22 sing N N 102 GLN OXT HXT sing N N 103 GLU N CA sing N N 104 GLU N H sing N N 105 GLU N H2 sing N N 106 GLU CA C sing N N 107 GLU CA CB sing N N 108 GLU CA HA sing N N 109 GLU C O doub N N 110 GLU C OXT sing N N 111 GLU CB CG sing N N 112 GLU CB HB2 sing N N 113 GLU CB HB3 sing N N 114 GLU CG CD sing N N 115 GLU CG HG2 sing N N 116 GLU CG HG3 sing N N 117 GLU CD OE1 doub N N 118 GLU CD OE2 sing N N 119 GLU OE2 HE2 sing N N 120 GLU OXT HXT sing N N 121 GLY N CA sing N N 122 GLY N H sing N N 123 GLY N H2 sing N N 124 GLY CA C sing N N 125 GLY CA HA2 sing N N 126 GLY CA HA3 sing N N 127 GLY C O doub N N 128 GLY C OXT sing N N 129 GLY OXT HXT sing N N 130 HIS N CA sing N N 131 HIS N H sing N N 132 HIS N H2 sing N N 133 HIS CA C sing N N 134 HIS CA CB sing N N 135 HIS CA HA sing N N 136 HIS C O doub N N 137 HIS C OXT sing N N 138 HIS CB CG sing N N 139 HIS CB HB2 sing N N 140 HIS CB HB3 sing N N 141 HIS CG ND1 sing Y N 142 HIS CG CD2 doub Y N 143 HIS ND1 CE1 doub Y N 144 HIS ND1 HD1 sing N N 145 HIS CD2 NE2 sing Y N 146 HIS CD2 HD2 sing N N 147 HIS CE1 NE2 sing Y N 148 HIS CE1 HE1 sing N N 149 HIS NE2 HE2 sing N N 150 HIS OXT HXT sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 SER N CA sing N N 260 SER N H sing N N 261 SER N H2 sing N N 262 SER CA C sing N N 263 SER CA CB sing N N 264 SER CA HA sing N N 265 SER C O doub N N 266 SER C OXT sing N N 267 SER CB OG sing N N 268 SER CB HB2 sing N N 269 SER CB HB3 sing N N 270 SER OG HG sing N N 271 SER OXT HXT sing N N 272 TYR N CA sing N N 273 TYR N H sing N N 274 TYR N H2 sing N N 275 TYR CA C sing N N 276 TYR CA CB sing N N 277 TYR CA HA sing N N 278 TYR C O doub N N 279 TYR C OXT sing N N 280 TYR CB CG sing N N 281 TYR CB HB2 sing N N 282 TYR CB HB3 sing N N 283 TYR CG CD1 doub Y N 284 TYR CG CD2 sing Y N 285 TYR CD1 CE1 sing Y N 286 TYR CD1 HD1 sing N N 287 TYR CD2 CE2 doub Y N 288 TYR CD2 HD2 sing N N 289 TYR CE1 CZ doub Y N 290 TYR CE1 HE1 sing N N 291 TYR CE2 CZ sing Y N 292 TYR CE2 HE2 sing N N 293 TYR CZ OH sing N N 294 TYR OH HH sing N N 295 TYR OXT HXT sing N N 296 VAL N CA sing N N 297 VAL N H sing N N 298 VAL N H2 sing N N 299 VAL CA C sing N N 300 VAL CA CB sing N N 301 VAL CA HA sing N N 302 VAL C O doub N N 303 VAL C OXT sing N N 304 VAL CB CG1 sing N N 305 VAL CB CG2 sing N N 306 VAL CB HB sing N N 307 VAL CG1 HG11 sing N N 308 VAL CG1 HG12 sing N N 309 VAL CG1 HG13 sing N N 310 VAL CG2 HG21 sing N N 311 VAL CG2 HG22 sing N N 312 VAL CG2 HG23 sing N N 313 VAL OXT HXT sing N N 314 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-26 _em_admin.deposition_site PDBJ _em_admin.entry_id 9JB0 _em_admin.last_update 2025-04-09 _em_admin.map_release_date 2025-03-26 _em_admin.title 'Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ brain _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_entity_assembly_synthetic.cell ? _em_entity_assembly_synthetic.cellular_location ? _em_entity_assembly_synthetic.entity_assembly_id 1 _em_entity_assembly_synthetic.id 1 _em_entity_assembly_synthetic.ncbi_tax_id 32630 _em_entity_assembly_synthetic.organ ? _em_entity_assembly_synthetic.organelle ? _em_entity_assembly_synthetic.organism 'synthetic construct' _em_entity_assembly_synthetic.strain ? _em_entity_assembly_synthetic.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 178.45 _em_helical_entity.axial_rise_per_subunit 2.37 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX 1.21_5207: 'IMAGE ACQUISITION' ? 2 1 ? 1 ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? CLASSIFICATION ? 5 1 1 1 ? ? MASKING ? 6 1 1 1 ? ? RECONSTRUCTION ? 7 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? OTHER ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Academia Sinica (Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 110-2113-M-001-050-MY3 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9JB0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #