data_9JB2 # _entry.id 9JB2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JB2 pdb_00009jb2 10.2210/pdb9jb2/pdb WWPDB D_1300050624 ? ? EMDB EMD-61305 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-26 ? 2 'EM metadata' 1 0 2025-03-26 ? 3 'Half map' 1 0 2025-03-26 1 4 'Half map' 1 0 2025-03-26 2 5 Image 1 0 2025-03-26 ? 6 'Primary map' 1 0 2025-03-26 ? 7 'Structure model' 1 1 2025-04-02 ? 8 'Structure model' 1 2 2025-04-09 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 7 'Structure model' 'Data collection' 2 7 'Structure model' 'Database references' 3 8 'Structure model' 'Data collection' 4 8 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' citation 2 7 'Structure model' citation_author 3 7 'Structure model' em_admin 4 8 'Structure model' citation 5 8 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_citation.page_last' 2 7 'Structure model' '_citation.pdbx_database_id_PubMed' 3 7 'Structure model' '_citation.title' 4 7 'Structure model' '_citation_author.name' 5 7 'Structure model' '_em_admin.last_update' 6 8 'Structure model' '_citation.journal_volume' 7 8 'Structure model' '_citation.title' 8 8 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JB2 _pdbx_database_status.recvd_initial_deposition_date 2024-08-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23' _pdbx_database_related.db_id EMD-61305 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email sthsu@gate.sinica.edu.tw _pdbx_contact_author.name_first Shang-Te _pdbx_contact_author.name_last Hsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7231-0185 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hsiao, L.C.' 1 0009-0001-1945-0744 'Lee, C.H.' 2 0000-0002-7470-3249 'Hsu, M.F.' 3 0000-0002-5473-5171 'Hsu, S.T.' 4 0000-0002-7231-0185 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 437 _citation.language ? _citation.page_first 169092 _citation.page_last 169092 _citation.title 'Impacts of D-aspartate on the Aggregation Kinetics and Structural Polymorphism of Amyloid beta Peptide 1-42.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2025.169092 _citation.pdbx_database_id_PubMed 40090459 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hsiao, L.C.' 1 ? primary 'Lee, C.H.' 2 ? primary 'Mazmanian, K.' 3 ? primary 'Yoshida, M.' 4 ? primary 'Ito, G.' 5 ? primary 'Murata, T.' 6 ? primary 'Utsunomiya-Tate, N.' 7 ? primary 'Haino, T.' 8 ? primary 'Tate, S.I.' 9 ? primary 'Hsu, S.D.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 4520.087 _entity.pdbx_number_of_molecules 15 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid A4 protein homolog,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta (A4) precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'DAEFRH(DAS)SGYEVHHQKLVFFAE(DAS)VGSNKGAIIGLMVGGVVIA' _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id C,A,B,D,E,CC,BE,BD,BC,BB,BA,CB,CA,CD,CE _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 DAS n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 DAS n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n 1 41 ILE n 1 42 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? C . n A 1 2 ALA 2 2 ? ? ? C . n A 1 3 GLU 3 3 ? ? ? C . n A 1 4 PHE 4 4 ? ? ? C . n A 1 5 ARG 5 5 ? ? ? C . n A 1 6 HIS 6 6 ? ? ? C . n A 1 7 DAS 7 7 ? ? ? C . n A 1 8 SER 8 8 ? ? ? C . n A 1 9 GLY 9 9 9 GLY GLY C . n A 1 10 TYR 10 10 10 TYR TYR C . n A 1 11 GLU 11 11 11 GLU GLU C . n A 1 12 VAL 12 12 12 VAL VAL C . n A 1 13 HIS 13 13 13 HIS HIS C . n A 1 14 HIS 14 14 14 HIS HIS C . n A 1 15 GLN 15 15 15 GLN GLN C . n A 1 16 LYS 16 16 16 LYS LYS C . n A 1 17 LEU 17 17 17 LEU LEU C . n A 1 18 VAL 18 18 18 VAL VAL C . n A 1 19 PHE 19 19 19 PHE PHE C . n A 1 20 PHE 20 20 20 PHE PHE C . n A 1 21 ALA 21 21 21 ALA ALA C . n A 1 22 GLU 22 22 22 GLU GLU C . n A 1 23 DAS 23 23 23 DAS DAS C . n A 1 24 VAL 24 24 24 VAL VAL C . n A 1 25 GLY 25 25 25 GLY GLY C . n A 1 26 SER 26 26 26 SER SER C . n A 1 27 ASN 27 27 27 ASN ASN C . n A 1 28 LYS 28 28 28 LYS LYS C . n A 1 29 GLY 29 29 29 GLY GLY C . n A 1 30 ALA 30 30 30 ALA ALA C . n A 1 31 ILE 31 31 31 ILE ILE C . n A 1 32 ILE 32 32 32 ILE ILE C . n A 1 33 GLY 33 33 33 GLY GLY C . n A 1 34 LEU 34 34 34 LEU LEU C . n A 1 35 MET 35 35 35 MET MET C . n A 1 36 VAL 36 36 36 VAL VAL C . n A 1 37 GLY 37 37 37 GLY GLY C . n A 1 38 GLY 38 38 38 GLY GLY C . n A 1 39 VAL 39 39 39 VAL VAL C . n A 1 40 VAL 40 40 40 VAL VAL C . n A 1 41 ILE 41 41 41 ILE ILE C . n A 1 42 ALA 42 42 42 ALA ALA C . n B 1 1 ASP 1 1 ? ? ? A . n B 1 2 ALA 2 2 ? ? ? A . n B 1 3 GLU 3 3 ? ? ? A . n B 1 4 PHE 4 4 ? ? ? A . n B 1 5 ARG 5 5 ? ? ? A . n B 1 6 HIS 6 6 ? ? ? A . n B 1 7 DAS 7 7 ? ? ? A . n B 1 8 SER 8 8 ? ? ? A . n B 1 9 GLY 9 9 9 GLY GLY A . n B 1 10 TYR 10 10 10 TYR TYR A . n B 1 11 GLU 11 11 11 GLU GLU A . n B 1 12 VAL 12 12 12 VAL VAL A . n B 1 13 HIS 13 13 13 HIS HIS A . n B 1 14 HIS 14 14 14 HIS HIS A . n B 1 15 GLN 15 15 15 GLN GLN A . n B 1 16 LYS 16 16 16 LYS LYS A . n B 1 17 LEU 17 17 17 LEU LEU A . n B 1 18 VAL 18 18 18 VAL VAL A . n B 1 19 PHE 19 19 19 PHE PHE A . n B 1 20 PHE 20 20 20 PHE PHE A . n B 1 21 ALA 21 21 21 ALA ALA A . n B 1 22 GLU 22 22 22 GLU GLU A . n B 1 23 DAS 23 23 23 DAS DAS A . n B 1 24 VAL 24 24 24 VAL VAL A . n B 1 25 GLY 25 25 25 GLY GLY A . n B 1 26 SER 26 26 26 SER SER A . n B 1 27 ASN 27 27 27 ASN ASN A . n B 1 28 LYS 28 28 28 LYS LYS A . n B 1 29 GLY 29 29 29 GLY GLY A . n B 1 30 ALA 30 30 30 ALA ALA A . n B 1 31 ILE 31 31 31 ILE ILE A . n B 1 32 ILE 32 32 32 ILE ILE A . n B 1 33 GLY 33 33 33 GLY GLY A . n B 1 34 LEU 34 34 34 LEU LEU A . n B 1 35 MET 35 35 35 MET MET A . n B 1 36 VAL 36 36 36 VAL VAL A . n B 1 37 GLY 37 37 37 GLY GLY A . n B 1 38 GLY 38 38 38 GLY GLY A . n B 1 39 VAL 39 39 39 VAL VAL A . n B 1 40 VAL 40 40 40 VAL VAL A . n B 1 41 ILE 41 41 41 ILE ILE A . n B 1 42 ALA 42 42 42 ALA ALA A . n C 1 1 ASP 1 1 ? ? ? B . n C 1 2 ALA 2 2 ? ? ? B . n C 1 3 GLU 3 3 ? ? ? B . n C 1 4 PHE 4 4 ? ? ? B . n C 1 5 ARG 5 5 ? ? ? B . n C 1 6 HIS 6 6 ? ? ? B . n C 1 7 DAS 7 7 ? ? ? B . n C 1 8 SER 8 8 ? ? ? B . n C 1 9 GLY 9 9 9 GLY GLY B . n C 1 10 TYR 10 10 10 TYR TYR B . n C 1 11 GLU 11 11 11 GLU GLU B . n C 1 12 VAL 12 12 12 VAL VAL B . n C 1 13 HIS 13 13 13 HIS HIS B . n C 1 14 HIS 14 14 14 HIS HIS B . n C 1 15 GLN 15 15 15 GLN GLN B . n C 1 16 LYS 16 16 16 LYS LYS B . n C 1 17 LEU 17 17 17 LEU LEU B . n C 1 18 VAL 18 18 18 VAL VAL B . n C 1 19 PHE 19 19 19 PHE PHE B . n C 1 20 PHE 20 20 20 PHE PHE B . n C 1 21 ALA 21 21 21 ALA ALA B . n C 1 22 GLU 22 22 22 GLU GLU B . n C 1 23 DAS 23 23 23 DAS DAS B . n C 1 24 VAL 24 24 24 VAL VAL B . n C 1 25 GLY 25 25 25 GLY GLY B . n C 1 26 SER 26 26 26 SER SER B . n C 1 27 ASN 27 27 27 ASN ASN B . n C 1 28 LYS 28 28 28 LYS LYS B . n C 1 29 GLY 29 29 29 GLY GLY B . n C 1 30 ALA 30 30 30 ALA ALA B . n C 1 31 ILE 31 31 31 ILE ILE B . n C 1 32 ILE 32 32 32 ILE ILE B . n C 1 33 GLY 33 33 33 GLY GLY B . n C 1 34 LEU 34 34 34 LEU LEU B . n C 1 35 MET 35 35 35 MET MET B . n C 1 36 VAL 36 36 36 VAL VAL B . n C 1 37 GLY 37 37 37 GLY GLY B . n C 1 38 GLY 38 38 38 GLY GLY B . n C 1 39 VAL 39 39 39 VAL VAL B . n C 1 40 VAL 40 40 40 VAL VAL B . n C 1 41 ILE 41 41 41 ILE ILE B . n C 1 42 ALA 42 42 42 ALA ALA B . n D 1 1 ASP 1 1 ? ? ? D . n D 1 2 ALA 2 2 ? ? ? D . n D 1 3 GLU 3 3 ? ? ? D . n D 1 4 PHE 4 4 ? ? ? D . n D 1 5 ARG 5 5 ? ? ? D . n D 1 6 HIS 6 6 ? ? ? D . n D 1 7 DAS 7 7 ? ? ? D . n D 1 8 SER 8 8 ? ? ? D . n D 1 9 GLY 9 9 9 GLY GLY D . n D 1 10 TYR 10 10 10 TYR TYR D . n D 1 11 GLU 11 11 11 GLU GLU D . n D 1 12 VAL 12 12 12 VAL VAL D . n D 1 13 HIS 13 13 13 HIS HIS D . n D 1 14 HIS 14 14 14 HIS HIS D . n D 1 15 GLN 15 15 15 GLN GLN D . n D 1 16 LYS 16 16 16 LYS LYS D . n D 1 17 LEU 17 17 17 LEU LEU D . n D 1 18 VAL 18 18 18 VAL VAL D . n D 1 19 PHE 19 19 19 PHE PHE D . n D 1 20 PHE 20 20 20 PHE PHE D . n D 1 21 ALA 21 21 21 ALA ALA D . n D 1 22 GLU 22 22 22 GLU GLU D . n D 1 23 DAS 23 23 23 DAS DAS D . n D 1 24 VAL 24 24 24 VAL VAL D . n D 1 25 GLY 25 25 25 GLY GLY D . n D 1 26 SER 26 26 26 SER SER D . n D 1 27 ASN 27 27 27 ASN ASN D . n D 1 28 LYS 28 28 28 LYS LYS D . n D 1 29 GLY 29 29 29 GLY GLY D . n D 1 30 ALA 30 30 30 ALA ALA D . n D 1 31 ILE 31 31 31 ILE ILE D . n D 1 32 ILE 32 32 32 ILE ILE D . n D 1 33 GLY 33 33 33 GLY GLY D . n D 1 34 LEU 34 34 34 LEU LEU D . n D 1 35 MET 35 35 35 MET MET D . n D 1 36 VAL 36 36 36 VAL VAL D . n D 1 37 GLY 37 37 37 GLY GLY D . n D 1 38 GLY 38 38 38 GLY GLY D . n D 1 39 VAL 39 39 39 VAL VAL D . n D 1 40 VAL 40 40 40 VAL VAL D . n D 1 41 ILE 41 41 41 ILE ILE D . n D 1 42 ALA 42 42 42 ALA ALA D . n E 1 1 ASP 1 1 ? ? ? E . n E 1 2 ALA 2 2 ? ? ? E . n E 1 3 GLU 3 3 ? ? ? E . n E 1 4 PHE 4 4 ? ? ? E . n E 1 5 ARG 5 5 ? ? ? E . n E 1 6 HIS 6 6 ? ? ? E . n E 1 7 DAS 7 7 ? ? ? E . n E 1 8 SER 8 8 ? ? ? E . n E 1 9 GLY 9 9 9 GLY GLY E . n E 1 10 TYR 10 10 10 TYR TYR E . n E 1 11 GLU 11 11 11 GLU GLU E . n E 1 12 VAL 12 12 12 VAL VAL E . n E 1 13 HIS 13 13 13 HIS HIS E . n E 1 14 HIS 14 14 14 HIS HIS E . n E 1 15 GLN 15 15 15 GLN GLN E . n E 1 16 LYS 16 16 16 LYS LYS E . n E 1 17 LEU 17 17 17 LEU LEU E . n E 1 18 VAL 18 18 18 VAL VAL E . n E 1 19 PHE 19 19 19 PHE PHE E . n E 1 20 PHE 20 20 20 PHE PHE E . n E 1 21 ALA 21 21 21 ALA ALA E . n E 1 22 GLU 22 22 22 GLU GLU E . n E 1 23 DAS 23 23 23 DAS DAS E . n E 1 24 VAL 24 24 24 VAL VAL E . n E 1 25 GLY 25 25 25 GLY GLY E . n E 1 26 SER 26 26 26 SER SER E . n E 1 27 ASN 27 27 27 ASN ASN E . n E 1 28 LYS 28 28 28 LYS LYS E . n E 1 29 GLY 29 29 29 GLY GLY E . n E 1 30 ALA 30 30 30 ALA ALA E . n E 1 31 ILE 31 31 31 ILE ILE E . n E 1 32 ILE 32 32 32 ILE ILE E . n E 1 33 GLY 33 33 33 GLY GLY E . n E 1 34 LEU 34 34 34 LEU LEU E . n E 1 35 MET 35 35 35 MET MET E . n E 1 36 VAL 36 36 36 VAL VAL E . n E 1 37 GLY 37 37 37 GLY GLY E . n E 1 38 GLY 38 38 38 GLY GLY E . n E 1 39 VAL 39 39 39 VAL VAL E . n E 1 40 VAL 40 40 40 VAL VAL E . n E 1 41 ILE 41 41 41 ILE ILE E . n E 1 42 ALA 42 42 42 ALA ALA E . n F 1 1 ASP 1 1 1 ASP ASP CC . n F 1 2 ALA 2 2 2 ALA ALA CC . n F 1 3 GLU 3 3 3 GLU GLU CC . n F 1 4 PHE 4 4 4 PHE PHE CC . n F 1 5 ARG 5 5 5 ARG ARG CC . n F 1 6 HIS 6 6 6 HIS HIS CC . n F 1 7 DAS 7 7 7 DAS DAS CC . n F 1 8 SER 8 8 8 SER SER CC . n F 1 9 GLY 9 9 9 GLY GLY CC . n F 1 10 TYR 10 10 10 TYR TYR CC . n F 1 11 GLU 11 11 11 GLU GLU CC . n F 1 12 VAL 12 12 12 VAL VAL CC . n F 1 13 HIS 13 13 13 HIS HIS CC . n F 1 14 HIS 14 14 14 HIS HIS CC . n F 1 15 GLN 15 15 15 GLN GLN CC . n F 1 16 LYS 16 16 16 LYS LYS CC . n F 1 17 LEU 17 17 17 LEU LEU CC . n F 1 18 VAL 18 18 18 VAL VAL CC . n F 1 19 PHE 19 19 19 PHE PHE CC . n F 1 20 PHE 20 20 20 PHE PHE CC . n F 1 21 ALA 21 21 21 ALA ALA CC . n F 1 22 GLU 22 22 22 GLU GLU CC . n F 1 23 DAS 23 23 23 DAS DAS CC . n F 1 24 VAL 24 24 24 VAL VAL CC . n F 1 25 GLY 25 25 25 GLY GLY CC . n F 1 26 SER 26 26 26 SER SER CC . n F 1 27 ASN 27 27 27 ASN ASN CC . n F 1 28 LYS 28 28 28 LYS LYS CC . n F 1 29 GLY 29 29 29 GLY GLY CC . n F 1 30 ALA 30 30 30 ALA ALA CC . n F 1 31 ILE 31 31 31 ILE ILE CC . n F 1 32 ILE 32 32 32 ILE ILE CC . n F 1 33 GLY 33 33 33 GLY GLY CC . n F 1 34 LEU 34 34 34 LEU LEU CC . n F 1 35 MET 35 35 35 MET MET CC . n F 1 36 VAL 36 36 36 VAL VAL CC . n F 1 37 GLY 37 37 37 GLY GLY CC . n F 1 38 GLY 38 38 38 GLY GLY CC . n F 1 39 VAL 39 39 39 VAL VAL CC . n F 1 40 VAL 40 40 40 VAL VAL CC . n F 1 41 ILE 41 41 41 ILE ILE CC . n F 1 42 ALA 42 42 42 ALA ALA CC . n G 1 1 ASP 1 1 ? ? ? BE . n G 1 2 ALA 2 2 ? ? ? BE . n G 1 3 GLU 3 3 ? ? ? BE . n G 1 4 PHE 4 4 ? ? ? BE . n G 1 5 ARG 5 5 ? ? ? BE . n G 1 6 HIS 6 6 ? ? ? BE . n G 1 7 DAS 7 7 ? ? ? BE . n G 1 8 SER 8 8 ? ? ? BE . n G 1 9 GLY 9 9 ? ? ? BE . n G 1 10 TYR 10 10 ? ? ? BE . n G 1 11 GLU 11 11 ? ? ? BE . n G 1 12 VAL 12 12 ? ? ? BE . n G 1 13 HIS 13 13 ? ? ? BE . n G 1 14 HIS 14 14 ? ? ? BE . n G 1 15 GLN 15 15 15 GLN GLN BE . n G 1 16 LYS 16 16 16 LYS LYS BE . n G 1 17 LEU 17 17 17 LEU LEU BE . n G 1 18 VAL 18 18 18 VAL VAL BE . n G 1 19 PHE 19 19 19 PHE PHE BE . n G 1 20 PHE 20 20 20 PHE PHE BE . n G 1 21 ALA 21 21 21 ALA ALA BE . n G 1 22 GLU 22 22 22 GLU GLU BE . n G 1 23 DAS 23 23 23 DAS DAS BE . n G 1 24 VAL 24 24 24 VAL VAL BE . n G 1 25 GLY 25 25 25 GLY GLY BE . n G 1 26 SER 26 26 26 SER SER BE . n G 1 27 ASN 27 27 27 ASN ASN BE . n G 1 28 LYS 28 28 28 LYS LYS BE . n G 1 29 GLY 29 29 29 GLY GLY BE . n G 1 30 ALA 30 30 30 ALA ALA BE . n G 1 31 ILE 31 31 31 ILE ILE BE . n G 1 32 ILE 32 32 32 ILE ILE BE . n G 1 33 GLY 33 33 33 GLY GLY BE . n G 1 34 LEU 34 34 34 LEU LEU BE . n G 1 35 MET 35 35 35 MET MET BE . n G 1 36 VAL 36 36 36 VAL VAL BE . n G 1 37 GLY 37 37 37 GLY GLY BE . n G 1 38 GLY 38 38 38 GLY GLY BE . n G 1 39 VAL 39 39 39 VAL VAL BE . n G 1 40 VAL 40 40 40 VAL VAL BE . n G 1 41 ILE 41 41 41 ILE ILE BE . n G 1 42 ALA 42 42 42 ALA ALA BE . n H 1 1 ASP 1 1 ? ? ? BD . n H 1 2 ALA 2 2 ? ? ? BD . n H 1 3 GLU 3 3 ? ? ? BD . n H 1 4 PHE 4 4 ? ? ? BD . n H 1 5 ARG 5 5 ? ? ? BD . n H 1 6 HIS 6 6 ? ? ? BD . n H 1 7 DAS 7 7 ? ? ? BD . n H 1 8 SER 8 8 ? ? ? BD . n H 1 9 GLY 9 9 ? ? ? BD . n H 1 10 TYR 10 10 ? ? ? BD . n H 1 11 GLU 11 11 ? ? ? BD . n H 1 12 VAL 12 12 ? ? ? BD . n H 1 13 HIS 13 13 ? ? ? BD . n H 1 14 HIS 14 14 ? ? ? BD . n H 1 15 GLN 15 15 15 GLN GLN BD . n H 1 16 LYS 16 16 16 LYS LYS BD . n H 1 17 LEU 17 17 17 LEU LEU BD . n H 1 18 VAL 18 18 18 VAL VAL BD . n H 1 19 PHE 19 19 19 PHE PHE BD . n H 1 20 PHE 20 20 20 PHE PHE BD . n H 1 21 ALA 21 21 21 ALA ALA BD . n H 1 22 GLU 22 22 22 GLU GLU BD . n H 1 23 DAS 23 23 23 DAS DAS BD . n H 1 24 VAL 24 24 24 VAL VAL BD . n H 1 25 GLY 25 25 25 GLY GLY BD . n H 1 26 SER 26 26 26 SER SER BD . n H 1 27 ASN 27 27 27 ASN ASN BD . n H 1 28 LYS 28 28 28 LYS LYS BD . n H 1 29 GLY 29 29 29 GLY GLY BD . n H 1 30 ALA 30 30 30 ALA ALA BD . n H 1 31 ILE 31 31 31 ILE ILE BD . n H 1 32 ILE 32 32 32 ILE ILE BD . n H 1 33 GLY 33 33 33 GLY GLY BD . n H 1 34 LEU 34 34 34 LEU LEU BD . n H 1 35 MET 35 35 35 MET MET BD . n H 1 36 VAL 36 36 36 VAL VAL BD . n H 1 37 GLY 37 37 37 GLY GLY BD . n H 1 38 GLY 38 38 38 GLY GLY BD . n H 1 39 VAL 39 39 39 VAL VAL BD . n H 1 40 VAL 40 40 40 VAL VAL BD . n H 1 41 ILE 41 41 41 ILE ILE BD . n H 1 42 ALA 42 42 42 ALA ALA BD . n I 1 1 ASP 1 1 ? ? ? BC . n I 1 2 ALA 2 2 ? ? ? BC . n I 1 3 GLU 3 3 ? ? ? BC . n I 1 4 PHE 4 4 ? ? ? BC . n I 1 5 ARG 5 5 ? ? ? BC . n I 1 6 HIS 6 6 ? ? ? BC . n I 1 7 DAS 7 7 ? ? ? BC . n I 1 8 SER 8 8 ? ? ? BC . n I 1 9 GLY 9 9 ? ? ? BC . n I 1 10 TYR 10 10 ? ? ? BC . n I 1 11 GLU 11 11 ? ? ? BC . n I 1 12 VAL 12 12 ? ? ? BC . n I 1 13 HIS 13 13 ? ? ? BC . n I 1 14 HIS 14 14 ? ? ? BC . n I 1 15 GLN 15 15 15 GLN GLN BC . n I 1 16 LYS 16 16 16 LYS LYS BC . n I 1 17 LEU 17 17 17 LEU LEU BC . n I 1 18 VAL 18 18 18 VAL VAL BC . n I 1 19 PHE 19 19 19 PHE PHE BC . n I 1 20 PHE 20 20 20 PHE PHE BC . n I 1 21 ALA 21 21 21 ALA ALA BC . n I 1 22 GLU 22 22 22 GLU GLU BC . n I 1 23 DAS 23 23 23 DAS DAS BC . n I 1 24 VAL 24 24 24 VAL VAL BC . n I 1 25 GLY 25 25 25 GLY GLY BC . n I 1 26 SER 26 26 26 SER SER BC . n I 1 27 ASN 27 27 27 ASN ASN BC . n I 1 28 LYS 28 28 28 LYS LYS BC . n I 1 29 GLY 29 29 29 GLY GLY BC . n I 1 30 ALA 30 30 30 ALA ALA BC . n I 1 31 ILE 31 31 31 ILE ILE BC . n I 1 32 ILE 32 32 32 ILE ILE BC . n I 1 33 GLY 33 33 33 GLY GLY BC . n I 1 34 LEU 34 34 34 LEU LEU BC . n I 1 35 MET 35 35 35 MET MET BC . n I 1 36 VAL 36 36 36 VAL VAL BC . n I 1 37 GLY 37 37 37 GLY GLY BC . n I 1 38 GLY 38 38 38 GLY GLY BC . n I 1 39 VAL 39 39 39 VAL VAL BC . n I 1 40 VAL 40 40 40 VAL VAL BC . n I 1 41 ILE 41 41 41 ILE ILE BC . n I 1 42 ALA 42 42 42 ALA ALA BC . n J 1 1 ASP 1 1 ? ? ? BB . n J 1 2 ALA 2 2 ? ? ? BB . n J 1 3 GLU 3 3 ? ? ? BB . n J 1 4 PHE 4 4 ? ? ? BB . n J 1 5 ARG 5 5 ? ? ? BB . n J 1 6 HIS 6 6 ? ? ? BB . n J 1 7 DAS 7 7 ? ? ? BB . n J 1 8 SER 8 8 ? ? ? BB . n J 1 9 GLY 9 9 ? ? ? BB . n J 1 10 TYR 10 10 ? ? ? BB . n J 1 11 GLU 11 11 ? ? ? BB . n J 1 12 VAL 12 12 ? ? ? BB . n J 1 13 HIS 13 13 ? ? ? BB . n J 1 14 HIS 14 14 ? ? ? BB . n J 1 15 GLN 15 15 15 GLN GLN BB . n J 1 16 LYS 16 16 16 LYS LYS BB . n J 1 17 LEU 17 17 17 LEU LEU BB . n J 1 18 VAL 18 18 18 VAL VAL BB . n J 1 19 PHE 19 19 19 PHE PHE BB . n J 1 20 PHE 20 20 20 PHE PHE BB . n J 1 21 ALA 21 21 21 ALA ALA BB . n J 1 22 GLU 22 22 22 GLU GLU BB . n J 1 23 DAS 23 23 23 DAS DAS BB . n J 1 24 VAL 24 24 24 VAL VAL BB . n J 1 25 GLY 25 25 25 GLY GLY BB . n J 1 26 SER 26 26 26 SER SER BB . n J 1 27 ASN 27 27 27 ASN ASN BB . n J 1 28 LYS 28 28 28 LYS LYS BB . n J 1 29 GLY 29 29 29 GLY GLY BB . n J 1 30 ALA 30 30 30 ALA ALA BB . n J 1 31 ILE 31 31 31 ILE ILE BB . n J 1 32 ILE 32 32 32 ILE ILE BB . n J 1 33 GLY 33 33 33 GLY GLY BB . n J 1 34 LEU 34 34 34 LEU LEU BB . n J 1 35 MET 35 35 35 MET MET BB . n J 1 36 VAL 36 36 36 VAL VAL BB . n J 1 37 GLY 37 37 37 GLY GLY BB . n J 1 38 GLY 38 38 38 GLY GLY BB . n J 1 39 VAL 39 39 39 VAL VAL BB . n J 1 40 VAL 40 40 40 VAL VAL BB . n J 1 41 ILE 41 41 41 ILE ILE BB . n J 1 42 ALA 42 42 42 ALA ALA BB . n K 1 1 ASP 1 1 ? ? ? BA . n K 1 2 ALA 2 2 ? ? ? BA . n K 1 3 GLU 3 3 ? ? ? BA . n K 1 4 PHE 4 4 ? ? ? BA . n K 1 5 ARG 5 5 ? ? ? BA . n K 1 6 HIS 6 6 ? ? ? BA . n K 1 7 DAS 7 7 ? ? ? BA . n K 1 8 SER 8 8 ? ? ? BA . n K 1 9 GLY 9 9 ? ? ? BA . n K 1 10 TYR 10 10 ? ? ? BA . n K 1 11 GLU 11 11 ? ? ? BA . n K 1 12 VAL 12 12 ? ? ? BA . n K 1 13 HIS 13 13 ? ? ? BA . n K 1 14 HIS 14 14 ? ? ? BA . n K 1 15 GLN 15 15 15 GLN GLN BA . n K 1 16 LYS 16 16 16 LYS LYS BA . n K 1 17 LEU 17 17 17 LEU LEU BA . n K 1 18 VAL 18 18 18 VAL VAL BA . n K 1 19 PHE 19 19 19 PHE PHE BA . n K 1 20 PHE 20 20 20 PHE PHE BA . n K 1 21 ALA 21 21 21 ALA ALA BA . n K 1 22 GLU 22 22 22 GLU GLU BA . n K 1 23 DAS 23 23 23 DAS DAS BA . n K 1 24 VAL 24 24 24 VAL VAL BA . n K 1 25 GLY 25 25 25 GLY GLY BA . n K 1 26 SER 26 26 26 SER SER BA . n K 1 27 ASN 27 27 27 ASN ASN BA . n K 1 28 LYS 28 28 28 LYS LYS BA . n K 1 29 GLY 29 29 29 GLY GLY BA . n K 1 30 ALA 30 30 30 ALA ALA BA . n K 1 31 ILE 31 31 31 ILE ILE BA . n K 1 32 ILE 32 32 32 ILE ILE BA . n K 1 33 GLY 33 33 33 GLY GLY BA . n K 1 34 LEU 34 34 34 LEU LEU BA . n K 1 35 MET 35 35 35 MET MET BA . n K 1 36 VAL 36 36 36 VAL VAL BA . n K 1 37 GLY 37 37 37 GLY GLY BA . n K 1 38 GLY 38 38 38 GLY GLY BA . n K 1 39 VAL 39 39 39 VAL VAL BA . n K 1 40 VAL 40 40 40 VAL VAL BA . n K 1 41 ILE 41 41 41 ILE ILE BA . n K 1 42 ALA 42 42 42 ALA ALA BA . n L 1 1 ASP 1 1 1 ASP ASP CB . n L 1 2 ALA 2 2 2 ALA ALA CB . n L 1 3 GLU 3 3 3 GLU GLU CB . n L 1 4 PHE 4 4 4 PHE PHE CB . n L 1 5 ARG 5 5 5 ARG ARG CB . n L 1 6 HIS 6 6 6 HIS HIS CB . n L 1 7 DAS 7 7 7 DAS DAS CB . n L 1 8 SER 8 8 8 SER SER CB . n L 1 9 GLY 9 9 9 GLY GLY CB . n L 1 10 TYR 10 10 10 TYR TYR CB . n L 1 11 GLU 11 11 11 GLU GLU CB . n L 1 12 VAL 12 12 12 VAL VAL CB . n L 1 13 HIS 13 13 13 HIS HIS CB . n L 1 14 HIS 14 14 14 HIS HIS CB . n L 1 15 GLN 15 15 15 GLN GLN CB . n L 1 16 LYS 16 16 16 LYS LYS CB . n L 1 17 LEU 17 17 17 LEU LEU CB . n L 1 18 VAL 18 18 18 VAL VAL CB . n L 1 19 PHE 19 19 19 PHE PHE CB . n L 1 20 PHE 20 20 20 PHE PHE CB . n L 1 21 ALA 21 21 21 ALA ALA CB . n L 1 22 GLU 22 22 22 GLU GLU CB . n L 1 23 DAS 23 23 23 DAS DAS CB . n L 1 24 VAL 24 24 24 VAL VAL CB . n L 1 25 GLY 25 25 25 GLY GLY CB . n L 1 26 SER 26 26 26 SER SER CB . n L 1 27 ASN 27 27 27 ASN ASN CB . n L 1 28 LYS 28 28 28 LYS LYS CB . n L 1 29 GLY 29 29 29 GLY GLY CB . n L 1 30 ALA 30 30 30 ALA ALA CB . n L 1 31 ILE 31 31 31 ILE ILE CB . n L 1 32 ILE 32 32 32 ILE ILE CB . n L 1 33 GLY 33 33 33 GLY GLY CB . n L 1 34 LEU 34 34 34 LEU LEU CB . n L 1 35 MET 35 35 35 MET MET CB . n L 1 36 VAL 36 36 36 VAL VAL CB . n L 1 37 GLY 37 37 37 GLY GLY CB . n L 1 38 GLY 38 38 38 GLY GLY CB . n L 1 39 VAL 39 39 39 VAL VAL CB . n L 1 40 VAL 40 40 40 VAL VAL CB . n L 1 41 ILE 41 41 41 ILE ILE CB . n L 1 42 ALA 42 42 42 ALA ALA CB . n M 1 1 ASP 1 1 1 ASP ASP CA . n M 1 2 ALA 2 2 2 ALA ALA CA . n M 1 3 GLU 3 3 3 GLU GLU CA . n M 1 4 PHE 4 4 4 PHE PHE CA . n M 1 5 ARG 5 5 5 ARG ARG CA . n M 1 6 HIS 6 6 6 HIS HIS CA . n M 1 7 DAS 7 7 7 DAS DAS CA . n M 1 8 SER 8 8 8 SER SER CA . n M 1 9 GLY 9 9 9 GLY GLY CA . n M 1 10 TYR 10 10 10 TYR TYR CA . n M 1 11 GLU 11 11 11 GLU GLU CA . n M 1 12 VAL 12 12 12 VAL VAL CA . n M 1 13 HIS 13 13 13 HIS HIS CA . n M 1 14 HIS 14 14 14 HIS HIS CA . n M 1 15 GLN 15 15 15 GLN GLN CA . n M 1 16 LYS 16 16 16 LYS LYS CA . n M 1 17 LEU 17 17 17 LEU LEU CA . n M 1 18 VAL 18 18 18 VAL VAL CA . n M 1 19 PHE 19 19 19 PHE PHE CA . n M 1 20 PHE 20 20 20 PHE PHE CA . n M 1 21 ALA 21 21 21 ALA ALA CA . n M 1 22 GLU 22 22 22 GLU GLU CA . n M 1 23 DAS 23 23 23 DAS DAS CA . n M 1 24 VAL 24 24 24 VAL VAL CA . n M 1 25 GLY 25 25 25 GLY GLY CA . n M 1 26 SER 26 26 26 SER SER CA . n M 1 27 ASN 27 27 27 ASN ASN CA . n M 1 28 LYS 28 28 28 LYS LYS CA . n M 1 29 GLY 29 29 29 GLY GLY CA . n M 1 30 ALA 30 30 30 ALA ALA CA . n M 1 31 ILE 31 31 31 ILE ILE CA . n M 1 32 ILE 32 32 32 ILE ILE CA . n M 1 33 GLY 33 33 33 GLY GLY CA . n M 1 34 LEU 34 34 34 LEU LEU CA . n M 1 35 MET 35 35 35 MET MET CA . n M 1 36 VAL 36 36 36 VAL VAL CA . n M 1 37 GLY 37 37 37 GLY GLY CA . n M 1 38 GLY 38 38 38 GLY GLY CA . n M 1 39 VAL 39 39 39 VAL VAL CA . n M 1 40 VAL 40 40 40 VAL VAL CA . n M 1 41 ILE 41 41 41 ILE ILE CA . n M 1 42 ALA 42 42 42 ALA ALA CA . n N 1 1 ASP 1 1 1 ASP ASP CD . n N 1 2 ALA 2 2 2 ALA ALA CD . n N 1 3 GLU 3 3 3 GLU GLU CD . n N 1 4 PHE 4 4 4 PHE PHE CD . n N 1 5 ARG 5 5 5 ARG ARG CD . n N 1 6 HIS 6 6 6 HIS HIS CD . n N 1 7 DAS 7 7 7 DAS DAS CD . n N 1 8 SER 8 8 8 SER SER CD . n N 1 9 GLY 9 9 9 GLY GLY CD . n N 1 10 TYR 10 10 10 TYR TYR CD . n N 1 11 GLU 11 11 11 GLU GLU CD . n N 1 12 VAL 12 12 12 VAL VAL CD . n N 1 13 HIS 13 13 13 HIS HIS CD . n N 1 14 HIS 14 14 14 HIS HIS CD . n N 1 15 GLN 15 15 15 GLN GLN CD . n N 1 16 LYS 16 16 16 LYS LYS CD . n N 1 17 LEU 17 17 17 LEU LEU CD . n N 1 18 VAL 18 18 18 VAL VAL CD . n N 1 19 PHE 19 19 19 PHE PHE CD . n N 1 20 PHE 20 20 20 PHE PHE CD . n N 1 21 ALA 21 21 21 ALA ALA CD . n N 1 22 GLU 22 22 22 GLU GLU CD . n N 1 23 DAS 23 23 23 DAS DAS CD . n N 1 24 VAL 24 24 24 VAL VAL CD . n N 1 25 GLY 25 25 25 GLY GLY CD . n N 1 26 SER 26 26 26 SER SER CD . n N 1 27 ASN 27 27 27 ASN ASN CD . n N 1 28 LYS 28 28 28 LYS LYS CD . n N 1 29 GLY 29 29 29 GLY GLY CD . n N 1 30 ALA 30 30 30 ALA ALA CD . n N 1 31 ILE 31 31 31 ILE ILE CD . n N 1 32 ILE 32 32 32 ILE ILE CD . n N 1 33 GLY 33 33 33 GLY GLY CD . n N 1 34 LEU 34 34 34 LEU LEU CD . n N 1 35 MET 35 35 35 MET MET CD . n N 1 36 VAL 36 36 36 VAL VAL CD . n N 1 37 GLY 37 37 37 GLY GLY CD . n N 1 38 GLY 38 38 38 GLY GLY CD . n N 1 39 VAL 39 39 39 VAL VAL CD . n N 1 40 VAL 40 40 40 VAL VAL CD . n N 1 41 ILE 41 41 41 ILE ILE CD . n N 1 42 ALA 42 42 42 ALA ALA CD . n O 1 1 ASP 1 1 1 ASP ASP CE . n O 1 2 ALA 2 2 2 ALA ALA CE . n O 1 3 GLU 3 3 3 GLU GLU CE . n O 1 4 PHE 4 4 4 PHE PHE CE . n O 1 5 ARG 5 5 5 ARG ARG CE . n O 1 6 HIS 6 6 6 HIS HIS CE . n O 1 7 DAS 7 7 7 DAS DAS CE . n O 1 8 SER 8 8 8 SER SER CE . n O 1 9 GLY 9 9 9 GLY GLY CE . n O 1 10 TYR 10 10 10 TYR TYR CE . n O 1 11 GLU 11 11 11 GLU GLU CE . n O 1 12 VAL 12 12 12 VAL VAL CE . n O 1 13 HIS 13 13 13 HIS HIS CE . n O 1 14 HIS 14 14 14 HIS HIS CE . n O 1 15 GLN 15 15 15 GLN GLN CE . n O 1 16 LYS 16 16 16 LYS LYS CE . n O 1 17 LEU 17 17 17 LEU LEU CE . n O 1 18 VAL 18 18 18 VAL VAL CE . n O 1 19 PHE 19 19 19 PHE PHE CE . n O 1 20 PHE 20 20 20 PHE PHE CE . n O 1 21 ALA 21 21 21 ALA ALA CE . n O 1 22 GLU 22 22 22 GLU GLU CE . n O 1 23 DAS 23 23 23 DAS DAS CE . n O 1 24 VAL 24 24 24 VAL VAL CE . n O 1 25 GLY 25 25 25 GLY GLY CE . n O 1 26 SER 26 26 26 SER SER CE . n O 1 27 ASN 27 27 27 ASN ASN CE . n O 1 28 LYS 28 28 28 LYS LYS CE . n O 1 29 GLY 29 29 29 GLY GLY CE . n O 1 30 ALA 30 30 30 ALA ALA CE . n O 1 31 ILE 31 31 31 ILE ILE CE . n O 1 32 ILE 32 32 32 ILE ILE CE . n O 1 33 GLY 33 33 33 GLY GLY CE . n O 1 34 LEU 34 34 34 LEU LEU CE . n O 1 35 MET 35 35 35 MET MET CE . n O 1 36 VAL 36 36 36 VAL VAL CE . n O 1 37 GLY 37 37 37 GLY GLY CE . n O 1 38 GLY 38 38 38 GLY GLY CE . n O 1 39 VAL 39 39 39 VAL VAL CE . n O 1 40 VAL 40 40 40 VAL VAL CE . n O 1 41 ILE 41 41 41 ILE ILE CE . n O 1 42 ALA 42 42 42 ALA ALA CE . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9JB2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JB2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9JB2 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3955 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.415 ? 5325 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.482 ? 1350 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.054 ? 600 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 695 ? f_plane_restr ? ? # _struct.entry_id 9JB2 _struct.title 'Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JB2 _struct_keywords.text 'aggregation, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 672 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JB2 C 1 ? 42 ? P05067 672 ? 713 ? 1 42 2 1 9JB2 A 1 ? 42 ? P05067 672 ? 713 ? 1 42 3 1 9JB2 B 1 ? 42 ? P05067 672 ? 713 ? 1 42 4 1 9JB2 D 1 ? 42 ? P05067 672 ? 713 ? 1 42 5 1 9JB2 E 1 ? 42 ? P05067 672 ? 713 ? 1 42 6 1 9JB2 CC 1 ? 42 ? P05067 672 ? 713 ? 1 42 7 1 9JB2 BE 1 ? 42 ? P05067 672 ? 713 ? 1 42 8 1 9JB2 BD 1 ? 42 ? P05067 672 ? 713 ? 1 42 9 1 9JB2 BC 1 ? 42 ? P05067 672 ? 713 ? 1 42 10 1 9JB2 BB 1 ? 42 ? P05067 672 ? 713 ? 1 42 11 1 9JB2 BA 1 ? 42 ? P05067 672 ? 713 ? 1 42 12 1 9JB2 CB 1 ? 42 ? P05067 672 ? 713 ? 1 42 13 1 9JB2 CA 1 ? 42 ? P05067 672 ? 713 ? 1 42 14 1 9JB2 CD 1 ? 42 ? P05067 672 ? 713 ? 1 42 15 1 9JB2 CE 1 ? 42 ? P05067 672 ? 713 ? 1 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9JB2 DAS C 7 ? UNP P05067 ASP 678 'modified residue' 7 1 1 9JB2 DAS C 23 ? UNP P05067 ASP 694 'modified residue' 23 2 2 9JB2 DAS A 7 ? UNP P05067 ASP 678 'modified residue' 7 3 2 9JB2 DAS A 23 ? UNP P05067 ASP 694 'modified residue' 23 4 3 9JB2 DAS B 7 ? UNP P05067 ASP 678 'modified residue' 7 5 3 9JB2 DAS B 23 ? UNP P05067 ASP 694 'modified residue' 23 6 4 9JB2 DAS D 7 ? UNP P05067 ASP 678 'modified residue' 7 7 4 9JB2 DAS D 23 ? UNP P05067 ASP 694 'modified residue' 23 8 5 9JB2 DAS E 7 ? UNP P05067 ASP 678 'modified residue' 7 9 5 9JB2 DAS E 23 ? UNP P05067 ASP 694 'modified residue' 23 10 6 9JB2 DAS CC 7 ? UNP P05067 ASP 678 'modified residue' 7 11 6 9JB2 DAS CC 23 ? UNP P05067 ASP 694 'modified residue' 23 12 7 9JB2 DAS BE 7 ? UNP P05067 ASP 678 'modified residue' 7 13 7 9JB2 DAS BE 23 ? UNP P05067 ASP 694 'modified residue' 23 14 8 9JB2 DAS BD 7 ? UNP P05067 ASP 678 'modified residue' 7 15 8 9JB2 DAS BD 23 ? UNP P05067 ASP 694 'modified residue' 23 16 9 9JB2 DAS BC 7 ? UNP P05067 ASP 678 'modified residue' 7 17 9 9JB2 DAS BC 23 ? UNP P05067 ASP 694 'modified residue' 23 18 10 9JB2 DAS BB 7 ? UNP P05067 ASP 678 'modified residue' 7 19 10 9JB2 DAS BB 23 ? UNP P05067 ASP 694 'modified residue' 23 20 11 9JB2 DAS BA 7 ? UNP P05067 ASP 678 'modified residue' 7 21 11 9JB2 DAS BA 23 ? UNP P05067 ASP 694 'modified residue' 23 22 12 9JB2 DAS CB 7 ? UNP P05067 ASP 678 'modified residue' 7 23 12 9JB2 DAS CB 23 ? UNP P05067 ASP 694 'modified residue' 23 24 13 9JB2 DAS CA 7 ? UNP P05067 ASP 678 'modified residue' 7 25 13 9JB2 DAS CA 23 ? UNP P05067 ASP 694 'modified residue' 23 26 14 9JB2 DAS CD 7 ? UNP P05067 ASP 678 'modified residue' 7 27 14 9JB2 DAS CD 23 ? UNP P05067 ASP 694 'modified residue' 23 28 15 9JB2 DAS CE 7 ? UNP P05067 ASP 678 'modified residue' 7 29 15 9JB2 DAS CE 23 ? UNP P05067 ASP 694 'modified residue' 23 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 22 C ? ? ? 1_555 A DAS 23 N ? ? C GLU 22 C DAS 23 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A DAS 23 C ? ? ? 1_555 A VAL 24 N ? ? C DAS 23 C VAL 24 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? B GLU 22 C ? ? ? 1_555 B DAS 23 N ? ? A GLU 22 A DAS 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? B DAS 23 C ? ? ? 1_555 B VAL 24 N ? ? A DAS 23 A VAL 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? C GLU 22 C ? ? ? 1_555 C DAS 23 N ? ? B GLU 22 B DAS 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? C DAS 23 C ? ? ? 1_555 C VAL 24 N ? ? B DAS 23 B VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? D GLU 22 C ? ? ? 1_555 D DAS 23 N ? ? D GLU 22 D DAS 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? D DAS 23 C ? ? ? 1_555 D VAL 24 N ? ? D DAS 23 D VAL 24 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? E GLU 22 C ? ? ? 1_555 E DAS 23 N ? ? E GLU 22 E DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? E DAS 23 C ? ? ? 1_555 E VAL 24 N ? ? E DAS 23 E VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? F HIS 6 C ? ? ? 1_555 F DAS 7 N ? ? CC HIS 6 CC DAS 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? F DAS 7 C ? ? ? 1_555 F SER 8 N ? ? CC DAS 7 CC SER 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? F GLU 22 C ? ? ? 1_555 F DAS 23 N ? ? CC GLU 22 CC DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? F DAS 23 C ? ? ? 1_555 F VAL 24 N ? ? CC DAS 23 CC VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? G GLU 22 C ? ? ? 1_555 G DAS 23 N ? ? BE GLU 22 BE DAS 23 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? G DAS 23 C ? ? ? 1_555 G VAL 24 N ? ? BE DAS 23 BE VAL 24 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale17 covale both ? H GLU 22 C ? ? ? 1_555 H DAS 23 N ? ? BD GLU 22 BD DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale18 covale both ? H DAS 23 C ? ? ? 1_555 H VAL 24 N ? ? BD DAS 23 BD VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale19 covale both ? I GLU 22 C ? ? ? 1_555 I DAS 23 N ? ? BC GLU 22 BC DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale20 covale both ? I DAS 23 C ? ? ? 1_555 I VAL 24 N ? ? BC DAS 23 BC VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? J GLU 22 C ? ? ? 1_555 J DAS 23 N ? ? BB GLU 22 BB DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale22 covale both ? J DAS 23 C ? ? ? 1_555 J VAL 24 N ? ? BB DAS 23 BB VAL 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale23 covale both ? K GLU 22 C ? ? ? 1_555 K DAS 23 N ? ? BA GLU 22 BA DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale24 covale both ? K DAS 23 C ? ? ? 1_555 K VAL 24 N ? ? BA DAS 23 BA VAL 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale25 covale both ? L HIS 6 C ? ? ? 1_555 L DAS 7 N ? ? CB HIS 6 CB DAS 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale26 covale both ? L DAS 7 C ? ? ? 1_555 L SER 8 N ? ? CB DAS 7 CB SER 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale27 covale both ? L GLU 22 C ? ? ? 1_555 L DAS 23 N ? ? CB GLU 22 CB DAS 23 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale28 covale both ? L DAS 23 C ? ? ? 1_555 L VAL 24 N ? ? CB DAS 23 CB VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale29 covale both ? M HIS 6 C ? ? ? 1_555 M DAS 7 N ? ? CA HIS 6 CA DAS 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale30 covale both ? M DAS 7 C ? ? ? 1_555 M SER 8 N ? ? CA DAS 7 CA SER 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale31 covale both ? M GLU 22 C ? ? ? 1_555 M DAS 23 N ? ? CA GLU 22 CA DAS 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale32 covale both ? M DAS 23 C ? ? ? 1_555 M VAL 24 N ? ? CA DAS 23 CA VAL 24 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale33 covale both ? N HIS 6 C ? ? ? 1_555 N DAS 7 N ? ? CD HIS 6 CD DAS 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale34 covale both ? N DAS 7 C ? ? ? 1_555 N SER 8 N ? ? CD DAS 7 CD SER 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale35 covale both ? N GLU 22 C ? ? ? 1_555 N DAS 23 N ? ? CD GLU 22 CD DAS 23 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale36 covale both ? N DAS 23 C ? ? ? 1_555 N VAL 24 N ? ? CD DAS 23 CD VAL 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale37 covale both ? O HIS 6 C ? ? ? 1_555 O DAS 7 N ? ? CE HIS 6 CE DAS 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale38 covale both ? O DAS 7 C ? ? ? 1_555 O SER 8 N ? ? CE DAS 7 CE SER 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale39 covale both ? O GLU 22 C ? ? ? 1_555 O DAS 23 N ? ? CE GLU 22 CE DAS 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale40 covale both ? O DAS 23 C ? ? ? 1_555 O VAL 24 N ? ? CE DAS 23 CE VAL 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 5 ? AB2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB2 3 4 ? parallel AB2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR B 10 ? VAL B 12 ? TYR A 10 VAL A 12 AA1 2 TYR C 10 ? VAL C 12 ? TYR B 10 VAL B 12 AA1 3 TYR A 10 ? VAL A 12 ? TYR C 10 VAL C 12 AA1 4 TYR D 10 ? VAL D 12 ? TYR D 10 VAL D 12 AA1 5 TYR E 10 ? VAL E 12 ? TYR E 10 VAL E 12 AA2 1 HIS B 14 ? PHE B 20 ? HIS A 14 PHE A 20 AA2 2 HIS C 14 ? PHE C 20 ? HIS B 14 PHE B 20 AA2 3 HIS A 14 ? PHE A 20 ? HIS C 14 PHE C 20 AA2 4 HIS D 14 ? PHE D 20 ? HIS D 14 PHE D 20 AA2 5 HIS E 14 ? PHE E 20 ? HIS E 14 PHE E 20 AA3 1 VAL B 39 ? ILE B 41 ? VAL A 39 ILE A 41 AA3 2 VAL C 39 ? ILE C 41 ? VAL B 39 ILE B 41 AA3 3 VAL A 39 ? ILE A 41 ? VAL C 39 ILE C 41 AA3 4 VAL D 39 ? ILE D 41 ? VAL D 39 ILE D 41 AA3 5 VAL E 39 ? ILE E 41 ? VAL E 39 ILE E 41 AA4 1 TYR M 10 ? HIS M 13 ? TYR CA 10 HIS CA 13 AA4 2 TYR L 10 ? HIS L 13 ? TYR CB 10 HIS CB 13 AA4 3 TYR F 10 ? HIS F 13 ? TYR CC 10 HIS CC 13 AA4 4 TYR N 10 ? HIS N 13 ? TYR CD 10 HIS CD 13 AA4 5 TYR O 10 ? HIS O 13 ? TYR CE 10 HIS CE 13 AA5 1 LYS M 16 ? ALA M 21 ? LYS CA 16 ALA CA 21 AA5 2 LYS L 16 ? ALA L 21 ? LYS CB 16 ALA CB 21 AA5 3 LYS F 16 ? ALA F 21 ? LYS CC 16 ALA CC 21 AA5 4 LYS N 16 ? ALA N 21 ? LYS CD 16 ALA CD 21 AA5 5 LYS O 16 ? ALA O 21 ? LYS CE 16 ALA CE 21 AA6 1 ALA M 30 ? ILE M 32 ? ALA CA 30 ILE CA 32 AA6 2 ALA L 30 ? ILE L 32 ? ALA CB 30 ILE CB 32 AA6 3 ALA F 30 ? ILE F 32 ? ALA CC 30 ILE CC 32 AA6 4 ALA N 30 ? ILE N 32 ? ALA CD 30 ILE CD 32 AA6 5 ALA O 30 ? ILE O 32 ? ALA CE 30 ILE CE 32 AA7 1 VAL M 39 ? ILE M 41 ? VAL CA 39 ILE CA 41 AA7 2 VAL L 39 ? ILE L 41 ? VAL CB 39 ILE CB 41 AA7 3 VAL F 39 ? ILE F 41 ? VAL CC 39 ILE CC 41 AA7 4 VAL N 39 ? ILE N 41 ? VAL CD 39 ILE CD 41 AA7 5 VAL O 39 ? ILE O 41 ? VAL CE 39 ILE CE 41 AA8 1 LYS G 16 ? PHE G 20 ? LYS BE 16 PHE BE 20 AA8 2 LYS H 16 ? PHE H 20 ? LYS BD 16 PHE BD 20 AA8 3 LYS I 16 ? PHE I 20 ? LYS BC 16 PHE BC 20 AA8 4 LYS J 16 ? PHE J 20 ? LYS BB 16 PHE BB 20 AA8 5 LYS K 16 ? PHE K 20 ? LYS BA 16 PHE BA 20 AA9 1 VAL G 24 ? ASN G 27 ? VAL BE 24 ASN BE 27 AA9 2 VAL H 24 ? ASN H 27 ? VAL BD 24 ASN BD 27 AA9 3 VAL I 24 ? ASN I 27 ? VAL BC 24 ASN BC 27 AA9 4 VAL J 24 ? ASN J 27 ? VAL BB 24 ASN BB 27 AA9 5 VAL K 24 ? ASN K 27 ? VAL BA 24 ASN BA 27 AB1 1 ALA G 30 ? ILE G 32 ? ALA BE 30 ILE BE 32 AB1 2 ALA H 30 ? ILE H 32 ? ALA BD 30 ILE BD 32 AB1 3 ALA I 30 ? ILE I 32 ? ALA BC 30 ILE BC 32 AB1 4 ALA J 30 ? ILE J 32 ? ALA BB 30 ILE BB 32 AB1 5 ALA K 30 ? ILE K 32 ? ALA BA 30 ILE BA 32 AB2 1 VAL G 39 ? ILE G 41 ? VAL BE 39 ILE BE 41 AB2 2 VAL H 39 ? ILE H 41 ? VAL BD 39 ILE BD 41 AB2 3 VAL I 39 ? ILE I 41 ? VAL BC 39 ILE BC 41 AB2 4 VAL J 39 ? ILE J 41 ? VAL BB 39 ILE BB 41 AB2 5 VAL K 39 ? ILE K 41 ? VAL BA 39 ILE BA 41 # _pdbx_entry_details.entry_id 9JB2 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DAS C 23 ? ? 171.80 -122.89 2 1 VAL C 24 ? ? -104.95 59.35 3 1 DAS A 23 ? ? 171.60 -125.37 4 1 VAL A 24 ? ? -101.81 55.77 5 1 LEU A 34 ? ? -160.62 112.12 6 1 DAS B 23 ? ? 172.24 -124.60 7 1 VAL B 24 ? ? -101.95 54.82 8 1 DAS D 23 ? ? 170.95 -110.81 9 1 VAL D 24 ? ? -116.03 61.12 10 1 LEU D 34 ? ? -160.09 114.15 11 1 DAS E 23 ? ? 168.24 -114.79 12 1 VAL E 24 ? ? -110.28 64.87 13 1 DAS CC 7 ? ? 125.23 159.70 14 1 GLU CC 22 ? ? -115.72 52.64 15 1 DAS CC 23 ? ? 150.22 56.29 16 1 DAS CB 7 ? ? 125.55 157.21 17 1 DAS CB 23 ? ? 150.47 51.31 18 1 DAS CA 7 ? ? 123.88 160.67 19 1 DAS CA 23 ? ? 134.97 46.20 20 1 DAS CD 7 ? ? 127.56 165.11 21 1 GLU CD 22 ? ? -119.52 55.96 22 1 DAS CD 23 ? ? 145.47 54.90 23 1 DAS CE 23 ? ? 146.44 53.68 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9JB2 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9JB2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 165668 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9JB2 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1400 _em_imaging.nominal_defocus_max 1700 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9JB2 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9JB2 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C ASP 1 ? A ASP 1 2 1 Y 1 C ALA 2 ? A ALA 2 3 1 Y 1 C GLU 3 ? A GLU 3 4 1 Y 1 C PHE 4 ? A PHE 4 5 1 Y 1 C ARG 5 ? A ARG 5 6 1 Y 1 C HIS 6 ? A HIS 6 7 1 Y 1 C DAS 7 ? A DAS 7 8 1 Y 1 C SER 8 ? A SER 8 9 1 Y 1 A ASP 1 ? B ASP 1 10 1 Y 1 A ALA 2 ? B ALA 2 11 1 Y 1 A GLU 3 ? B GLU 3 12 1 Y 1 A PHE 4 ? B PHE 4 13 1 Y 1 A ARG 5 ? B ARG 5 14 1 Y 1 A HIS 6 ? B HIS 6 15 1 Y 1 A DAS 7 ? B DAS 7 16 1 Y 1 A SER 8 ? B SER 8 17 1 Y 1 B ASP 1 ? C ASP 1 18 1 Y 1 B ALA 2 ? C ALA 2 19 1 Y 1 B GLU 3 ? C GLU 3 20 1 Y 1 B PHE 4 ? C PHE 4 21 1 Y 1 B ARG 5 ? C ARG 5 22 1 Y 1 B HIS 6 ? C HIS 6 23 1 Y 1 B DAS 7 ? C DAS 7 24 1 Y 1 B SER 8 ? C SER 8 25 1 Y 1 D ASP 1 ? D ASP 1 26 1 Y 1 D ALA 2 ? D ALA 2 27 1 Y 1 D GLU 3 ? D GLU 3 28 1 Y 1 D PHE 4 ? D PHE 4 29 1 Y 1 D ARG 5 ? D ARG 5 30 1 Y 1 D HIS 6 ? D HIS 6 31 1 Y 1 D DAS 7 ? D DAS 7 32 1 Y 1 D SER 8 ? D SER 8 33 1 Y 1 E ASP 1 ? E ASP 1 34 1 Y 1 E ALA 2 ? E ALA 2 35 1 Y 1 E GLU 3 ? E GLU 3 36 1 Y 1 E PHE 4 ? E PHE 4 37 1 Y 1 E ARG 5 ? E ARG 5 38 1 Y 1 E HIS 6 ? E HIS 6 39 1 Y 1 E DAS 7 ? E DAS 7 40 1 Y 1 E SER 8 ? E SER 8 41 1 Y 1 BE ASP 1 ? G ASP 1 42 1 Y 1 BE ALA 2 ? G ALA 2 43 1 Y 1 BE GLU 3 ? G GLU 3 44 1 Y 1 BE PHE 4 ? G PHE 4 45 1 Y 1 BE ARG 5 ? G ARG 5 46 1 Y 1 BE HIS 6 ? G HIS 6 47 1 Y 1 BE DAS 7 ? G DAS 7 48 1 Y 1 BE SER 8 ? G SER 8 49 1 Y 1 BE GLY 9 ? G GLY 9 50 1 Y 1 BE TYR 10 ? G TYR 10 51 1 Y 1 BE GLU 11 ? G GLU 11 52 1 Y 1 BE VAL 12 ? G VAL 12 53 1 Y 1 BE HIS 13 ? G HIS 13 54 1 Y 1 BE HIS 14 ? G HIS 14 55 1 Y 1 BD ASP 1 ? H ASP 1 56 1 Y 1 BD ALA 2 ? H ALA 2 57 1 Y 1 BD GLU 3 ? H GLU 3 58 1 Y 1 BD PHE 4 ? H PHE 4 59 1 Y 1 BD ARG 5 ? H ARG 5 60 1 Y 1 BD HIS 6 ? H HIS 6 61 1 Y 1 BD DAS 7 ? H DAS 7 62 1 Y 1 BD SER 8 ? H SER 8 63 1 Y 1 BD GLY 9 ? H GLY 9 64 1 Y 1 BD TYR 10 ? H TYR 10 65 1 Y 1 BD GLU 11 ? H GLU 11 66 1 Y 1 BD VAL 12 ? H VAL 12 67 1 Y 1 BD HIS 13 ? H HIS 13 68 1 Y 1 BD HIS 14 ? H HIS 14 69 1 Y 1 BC ASP 1 ? I ASP 1 70 1 Y 1 BC ALA 2 ? I ALA 2 71 1 Y 1 BC GLU 3 ? I GLU 3 72 1 Y 1 BC PHE 4 ? I PHE 4 73 1 Y 1 BC ARG 5 ? I ARG 5 74 1 Y 1 BC HIS 6 ? I HIS 6 75 1 Y 1 BC DAS 7 ? I DAS 7 76 1 Y 1 BC SER 8 ? I SER 8 77 1 Y 1 BC GLY 9 ? I GLY 9 78 1 Y 1 BC TYR 10 ? I TYR 10 79 1 Y 1 BC GLU 11 ? I GLU 11 80 1 Y 1 BC VAL 12 ? I VAL 12 81 1 Y 1 BC HIS 13 ? I HIS 13 82 1 Y 1 BC HIS 14 ? I HIS 14 83 1 Y 1 BB ASP 1 ? J ASP 1 84 1 Y 1 BB ALA 2 ? J ALA 2 85 1 Y 1 BB GLU 3 ? J GLU 3 86 1 Y 1 BB PHE 4 ? J PHE 4 87 1 Y 1 BB ARG 5 ? J ARG 5 88 1 Y 1 BB HIS 6 ? J HIS 6 89 1 Y 1 BB DAS 7 ? J DAS 7 90 1 Y 1 BB SER 8 ? J SER 8 91 1 Y 1 BB GLY 9 ? J GLY 9 92 1 Y 1 BB TYR 10 ? J TYR 10 93 1 Y 1 BB GLU 11 ? J GLU 11 94 1 Y 1 BB VAL 12 ? J VAL 12 95 1 Y 1 BB HIS 13 ? J HIS 13 96 1 Y 1 BB HIS 14 ? J HIS 14 97 1 Y 1 BA ASP 1 ? K ASP 1 98 1 Y 1 BA ALA 2 ? K ALA 2 99 1 Y 1 BA GLU 3 ? K GLU 3 100 1 Y 1 BA PHE 4 ? K PHE 4 101 1 Y 1 BA ARG 5 ? K ARG 5 102 1 Y 1 BA HIS 6 ? K HIS 6 103 1 Y 1 BA DAS 7 ? K DAS 7 104 1 Y 1 BA SER 8 ? K SER 8 105 1 Y 1 BA GLY 9 ? K GLY 9 106 1 Y 1 BA TYR 10 ? K TYR 10 107 1 Y 1 BA GLU 11 ? K GLU 11 108 1 Y 1 BA VAL 12 ? K VAL 12 109 1 Y 1 BA HIS 13 ? K HIS 13 110 1 Y 1 BA HIS 14 ? K HIS 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DAS N N N N 74 DAS CA C N R 75 DAS C C N N 76 DAS O O N N 77 DAS CB C N N 78 DAS CG C N N 79 DAS OD1 O N N 80 DAS OD2 O N N 81 DAS OXT O N N 82 DAS H H N N 83 DAS H2 H N N 84 DAS HA H N N 85 DAS HB2 H N N 86 DAS HB3 H N N 87 DAS HD2 H N N 88 DAS HXT H N N 89 GLN N N N N 90 GLN CA C N S 91 GLN C C N N 92 GLN O O N N 93 GLN CB C N N 94 GLN CG C N N 95 GLN CD C N N 96 GLN OE1 O N N 97 GLN NE2 N N N 98 GLN OXT O N N 99 GLN H H N N 100 GLN H2 H N N 101 GLN HA H N N 102 GLN HB2 H N N 103 GLN HB3 H N N 104 GLN HG2 H N N 105 GLN HG3 H N N 106 GLN HE21 H N N 107 GLN HE22 H N N 108 GLN HXT H N N 109 GLU N N N N 110 GLU CA C N S 111 GLU C C N N 112 GLU O O N N 113 GLU CB C N N 114 GLU CG C N N 115 GLU CD C N N 116 GLU OE1 O N N 117 GLU OE2 O N N 118 GLU OXT O N N 119 GLU H H N N 120 GLU H2 H N N 121 GLU HA H N N 122 GLU HB2 H N N 123 GLU HB3 H N N 124 GLU HG2 H N N 125 GLU HG3 H N N 126 GLU HE2 H N N 127 GLU HXT H N N 128 GLY N N N N 129 GLY CA C N N 130 GLY C C N N 131 GLY O O N N 132 GLY OXT O N N 133 GLY H H N N 134 GLY H2 H N N 135 GLY HA2 H N N 136 GLY HA3 H N N 137 GLY HXT H N N 138 HIS N N N N 139 HIS CA C N S 140 HIS C C N N 141 HIS O O N N 142 HIS CB C N N 143 HIS CG C Y N 144 HIS ND1 N Y N 145 HIS CD2 C Y N 146 HIS CE1 C Y N 147 HIS NE2 N Y N 148 HIS OXT O N N 149 HIS H H N N 150 HIS H2 H N N 151 HIS HA H N N 152 HIS HB2 H N N 153 HIS HB3 H N N 154 HIS HD1 H N N 155 HIS HD2 H N N 156 HIS HE1 H N N 157 HIS HE2 H N N 158 HIS HXT H N N 159 ILE N N N N 160 ILE CA C N S 161 ILE C C N N 162 ILE O O N N 163 ILE CB C N S 164 ILE CG1 C N N 165 ILE CG2 C N N 166 ILE CD1 C N N 167 ILE OXT O N N 168 ILE H H N N 169 ILE H2 H N N 170 ILE HA H N N 171 ILE HB H N N 172 ILE HG12 H N N 173 ILE HG13 H N N 174 ILE HG21 H N N 175 ILE HG22 H N N 176 ILE HG23 H N N 177 ILE HD11 H N N 178 ILE HD12 H N N 179 ILE HD13 H N N 180 ILE HXT H N N 181 LEU N N N N 182 LEU CA C N S 183 LEU C C N N 184 LEU O O N N 185 LEU CB C N N 186 LEU CG C N N 187 LEU CD1 C N N 188 LEU CD2 C N N 189 LEU OXT O N N 190 LEU H H N N 191 LEU H2 H N N 192 LEU HA H N N 193 LEU HB2 H N N 194 LEU HB3 H N N 195 LEU HG H N N 196 LEU HD11 H N N 197 LEU HD12 H N N 198 LEU HD13 H N N 199 LEU HD21 H N N 200 LEU HD22 H N N 201 LEU HD23 H N N 202 LEU HXT H N N 203 LYS N N N N 204 LYS CA C N S 205 LYS C C N N 206 LYS O O N N 207 LYS CB C N N 208 LYS CG C N N 209 LYS CD C N N 210 LYS CE C N N 211 LYS NZ N N N 212 LYS OXT O N N 213 LYS H H N N 214 LYS H2 H N N 215 LYS HA H N N 216 LYS HB2 H N N 217 LYS HB3 H N N 218 LYS HG2 H N N 219 LYS HG3 H N N 220 LYS HD2 H N N 221 LYS HD3 H N N 222 LYS HE2 H N N 223 LYS HE3 H N N 224 LYS HZ1 H N N 225 LYS HZ2 H N N 226 LYS HZ3 H N N 227 LYS HXT H N N 228 MET N N N N 229 MET CA C N S 230 MET C C N N 231 MET O O N N 232 MET CB C N N 233 MET CG C N N 234 MET SD S N N 235 MET CE C N N 236 MET OXT O N N 237 MET H H N N 238 MET H2 H N N 239 MET HA H N N 240 MET HB2 H N N 241 MET HB3 H N N 242 MET HG2 H N N 243 MET HG3 H N N 244 MET HE1 H N N 245 MET HE2 H N N 246 MET HE3 H N N 247 MET HXT H N N 248 PHE N N N N 249 PHE CA C N S 250 PHE C C N N 251 PHE O O N N 252 PHE CB C N N 253 PHE CG C Y N 254 PHE CD1 C Y N 255 PHE CD2 C Y N 256 PHE CE1 C Y N 257 PHE CE2 C Y N 258 PHE CZ C Y N 259 PHE OXT O N N 260 PHE H H N N 261 PHE H2 H N N 262 PHE HA H N N 263 PHE HB2 H N N 264 PHE HB3 H N N 265 PHE HD1 H N N 266 PHE HD2 H N N 267 PHE HE1 H N N 268 PHE HE2 H N N 269 PHE HZ H N N 270 PHE HXT H N N 271 SER N N N N 272 SER CA C N S 273 SER C C N N 274 SER O O N N 275 SER CB C N N 276 SER OG O N N 277 SER OXT O N N 278 SER H H N N 279 SER H2 H N N 280 SER HA H N N 281 SER HB2 H N N 282 SER HB3 H N N 283 SER HG H N N 284 SER HXT H N N 285 TYR N N N N 286 TYR CA C N S 287 TYR C C N N 288 TYR O O N N 289 TYR CB C N N 290 TYR CG C Y N 291 TYR CD1 C Y N 292 TYR CD2 C Y N 293 TYR CE1 C Y N 294 TYR CE2 C Y N 295 TYR CZ C Y N 296 TYR OH O N N 297 TYR OXT O N N 298 TYR H H N N 299 TYR H2 H N N 300 TYR HA H N N 301 TYR HB2 H N N 302 TYR HB3 H N N 303 TYR HD1 H N N 304 TYR HD2 H N N 305 TYR HE1 H N N 306 TYR HE2 H N N 307 TYR HH H N N 308 TYR HXT H N N 309 VAL N N N N 310 VAL CA C N S 311 VAL C C N N 312 VAL O O N N 313 VAL CB C N N 314 VAL CG1 C N N 315 VAL CG2 C N N 316 VAL OXT O N N 317 VAL H H N N 318 VAL H2 H N N 319 VAL HA H N N 320 VAL HB H N N 321 VAL HG11 H N N 322 VAL HG12 H N N 323 VAL HG13 H N N 324 VAL HG21 H N N 325 VAL HG22 H N N 326 VAL HG23 H N N 327 VAL HXT H N N 328 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DAS N CA sing N N 70 DAS N H sing N N 71 DAS N H2 sing N N 72 DAS CA C sing N N 73 DAS CA CB sing N N 74 DAS CA HA sing N N 75 DAS C O doub N N 76 DAS C OXT sing N N 77 DAS CB CG sing N N 78 DAS CB HB2 sing N N 79 DAS CB HB3 sing N N 80 DAS CG OD1 doub N N 81 DAS CG OD2 sing N N 82 DAS OD2 HD2 sing N N 83 DAS OXT HXT sing N N 84 GLN N CA sing N N 85 GLN N H sing N N 86 GLN N H2 sing N N 87 GLN CA C sing N N 88 GLN CA CB sing N N 89 GLN CA HA sing N N 90 GLN C O doub N N 91 GLN C OXT sing N N 92 GLN CB CG sing N N 93 GLN CB HB2 sing N N 94 GLN CB HB3 sing N N 95 GLN CG CD sing N N 96 GLN CG HG2 sing N N 97 GLN CG HG3 sing N N 98 GLN CD OE1 doub N N 99 GLN CD NE2 sing N N 100 GLN NE2 HE21 sing N N 101 GLN NE2 HE22 sing N N 102 GLN OXT HXT sing N N 103 GLU N CA sing N N 104 GLU N H sing N N 105 GLU N H2 sing N N 106 GLU CA C sing N N 107 GLU CA CB sing N N 108 GLU CA HA sing N N 109 GLU C O doub N N 110 GLU C OXT sing N N 111 GLU CB CG sing N N 112 GLU CB HB2 sing N N 113 GLU CB HB3 sing N N 114 GLU CG CD sing N N 115 GLU CG HG2 sing N N 116 GLU CG HG3 sing N N 117 GLU CD OE1 doub N N 118 GLU CD OE2 sing N N 119 GLU OE2 HE2 sing N N 120 GLU OXT HXT sing N N 121 GLY N CA sing N N 122 GLY N H sing N N 123 GLY N H2 sing N N 124 GLY CA C sing N N 125 GLY CA HA2 sing N N 126 GLY CA HA3 sing N N 127 GLY C O doub N N 128 GLY C OXT sing N N 129 GLY OXT HXT sing N N 130 HIS N CA sing N N 131 HIS N H sing N N 132 HIS N H2 sing N N 133 HIS CA C sing N N 134 HIS CA CB sing N N 135 HIS CA HA sing N N 136 HIS C O doub N N 137 HIS C OXT sing N N 138 HIS CB CG sing N N 139 HIS CB HB2 sing N N 140 HIS CB HB3 sing N N 141 HIS CG ND1 sing Y N 142 HIS CG CD2 doub Y N 143 HIS ND1 CE1 doub Y N 144 HIS ND1 HD1 sing N N 145 HIS CD2 NE2 sing Y N 146 HIS CD2 HD2 sing N N 147 HIS CE1 NE2 sing Y N 148 HIS CE1 HE1 sing N N 149 HIS NE2 HE2 sing N N 150 HIS OXT HXT sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 SER N CA sing N N 260 SER N H sing N N 261 SER N H2 sing N N 262 SER CA C sing N N 263 SER CA CB sing N N 264 SER CA HA sing N N 265 SER C O doub N N 266 SER C OXT sing N N 267 SER CB OG sing N N 268 SER CB HB2 sing N N 269 SER CB HB3 sing N N 270 SER OG HG sing N N 271 SER OXT HXT sing N N 272 TYR N CA sing N N 273 TYR N H sing N N 274 TYR N H2 sing N N 275 TYR CA C sing N N 276 TYR CA CB sing N N 277 TYR CA HA sing N N 278 TYR C O doub N N 279 TYR C OXT sing N N 280 TYR CB CG sing N N 281 TYR CB HB2 sing N N 282 TYR CB HB3 sing N N 283 TYR CG CD1 doub Y N 284 TYR CG CD2 sing Y N 285 TYR CD1 CE1 sing Y N 286 TYR CD1 HD1 sing N N 287 TYR CD2 CE2 doub Y N 288 TYR CD2 HD2 sing N N 289 TYR CE1 CZ doub Y N 290 TYR CE1 HE1 sing N N 291 TYR CE2 CZ sing Y N 292 TYR CE2 HE2 sing N N 293 TYR CZ OH sing N N 294 TYR OH HH sing N N 295 TYR OXT HXT sing N N 296 VAL N CA sing N N 297 VAL N H sing N N 298 VAL N H2 sing N N 299 VAL CA C sing N N 300 VAL CA CB sing N N 301 VAL CA HA sing N N 302 VAL C O doub N N 303 VAL C OXT sing N N 304 VAL CB CG1 sing N N 305 VAL CB CG2 sing N N 306 VAL CB HB sing N N 307 VAL CG1 HG11 sing N N 308 VAL CG1 HG12 sing N N 309 VAL CG1 HG13 sing N N 310 VAL CG2 HG21 sing N N 311 VAL CG2 HG22 sing N N 312 VAL CG2 HG23 sing N N 313 VAL OXT HXT sing N N 314 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-26 _em_admin.deposition_site PDBJ _em_admin.entry_id 9JB2 _em_admin.last_update 2025-04-09 _em_admin.map_release_date 2025-03-26 _em_admin.title 'Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ brain _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -2.12 _em_helical_entity.axial_rise_per_subunit 4.75 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX 1.21.1_5286: 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? CLASSIFICATION ? 5 1 1 1 ? ? MASKING ? 6 1 1 1 ? ? RECONSTRUCTION ? 7 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? OTHER ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Academia Sinica (Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 110-2113-M-001-050-MY3 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9JB2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #