HEADER LYASE 04-SEP-24 9JFF TITLE CRYSTAL STRUCTURE OF L-THREONINE-O-3-PHOSPHATE DECARBOXYLASE COBC IN TITLE 2 COMPLEX WITH REACTION INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-THREONINE-O-3-PHOSPHATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI, SINORHIZOBIUM MELILOTI; SOURCE 4 ORGANISM_TAXID: 382; SOURCE 5 GENE: COBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS COBALAMIN, L-THREONINE-O-3-PHOSPHATE DECARBOXYLASE, PLP, KEYWDS 2 AMINOPROPANOL PHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.JIANG,S.GUO,X.CHEN,Q.WEI,M.WANG REVDAT 1 16-OCT-24 9JFF 0 JRNL AUTH M.JIANG,S.GUO,X.CHEN,Q.WEI,M.WANG JRNL TITL CRYSTAL STRUCTURE OF L-THREONINE-O-3-PHOSPHATE DECARBOXYLASE JRNL TITL 2 COBC FROM SINORHIZOBIUM MELILOTI INVOLVED IN VITAMIN B 12 JRNL TITL 3 BIOSYNTHESIS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 734 50767 2024 JRNL REFN ESSN 1090-2104 JRNL PMID 39366178 JRNL DOI 10.1016/J.BBRC.2024.150767 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 36571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3100 - 5.0500 0.99 2804 146 0.1403 0.1632 REMARK 3 2 5.0400 - 4.0100 1.00 2740 150 0.1161 0.1472 REMARK 3 3 4.0000 - 3.5000 1.00 2736 145 0.1233 0.1682 REMARK 3 4 3.5000 - 3.1800 1.00 2696 151 0.1362 0.1793 REMARK 3 5 3.1800 - 2.9500 0.99 2723 128 0.1637 0.1994 REMARK 3 6 2.9500 - 2.7800 0.99 2691 134 0.1645 0.2110 REMARK 3 7 2.7800 - 2.6400 0.99 2678 147 0.1776 0.1864 REMARK 3 8 2.6400 - 2.5300 0.99 2639 148 0.1897 0.2580 REMARK 3 9 2.5300 - 2.4300 0.99 2635 145 0.1877 0.2365 REMARK 3 10 2.4300 - 2.3400 0.99 2703 111 0.2099 0.2343 REMARK 3 11 2.3400 - 2.2700 0.98 2646 138 0.2094 0.2347 REMARK 3 12 2.2700 - 2.2100 0.96 2602 125 0.2153 0.2516 REMARK 3 13 2.2100 - 2.1500 0.91 2488 122 0.2331 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 NULL REMARK 3 ANGLE : 0.664 NULL REMARK 3 CHIRALITY : 0.047 404 REMARK 3 PLANARITY : 0.007 477 REMARK 3 DIHEDRAL : 12.207 967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1300051223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL18U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 1.18400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.1 1.4 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 80.03700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 80.03700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 80.03700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 80.03700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 80.03700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -241.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.03700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 981 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 A 412 O HOH A 501 2.07 REMARK 500 OD1 ASP A 326 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 987 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 416 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 231 OG REMARK 620 2 SER A 231 OG 0.0 REMARK 620 3 HOH A 772 O 68.2 68.2 REMARK 620 4 HOH A 772 O 79.9 79.9 81.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9JFB RELATED DB: PDB REMARK 900 APO STRUCTURE OF SAME PROTEIN DBREF1 9JFF A 1 333 UNP A0A499W357_RHIML DBREF2 9JFF A A0A499W357 1 333 SEQADV 9JFF LEU A 334 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF GLU A 335 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 336 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 337 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 338 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 339 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 340 UNP A0A499W35 EXPRESSION TAG SEQADV 9JFF HIS A 341 UNP A0A499W35 EXPRESSION TAG SEQRES 1 A 341 MET SER ALA PRO ILE VAL HIS GLY GLY GLY ILE THR GLU SEQRES 2 A 341 ALA ALA ALA ARG TYR GLY GLY ARG PRO GLU ASP TRP LEU SEQRES 3 A 341 ASP LEU SER THR GLY ILE ASN PRO CYS PRO VAL ALA LEU SEQRES 4 A 341 PRO ALA VAL PRO GLU ARG ALA TRP HIS ARG LEU PRO ASP SEQRES 5 A 341 ARG GLN THR VAL ASP ASP ALA ARG SER ALA ALA ALA ASP SEQRES 6 A 341 TYR TYR ARG THR ASN GLY VAL LEU PRO LEU PRO VAL PRO SEQRES 7 A 341 GLY THR GLN SER VAL ILE GLN LEU LEU PRO ARG LEU ALA SEQRES 8 A 341 PRO ALA ASN ARG HIS VAL ALA ILE PHE GLY PRO THR TYR SEQRES 9 A 341 GLY GLU TYR ALA ARG VAL LEU GLU ALA ALA GLY PHE ALA SEQRES 10 A 341 VAL ASP ARG VAL ALA ASP ALA ASP ALA LEU THR ALA GLU SEQRES 11 A 341 HIS GLY LEU VAL ILE VAL VAL ASN PRO ASN ASN PRO THR SEQRES 12 A 341 GLY ARG ALA LEU ALA PRO ALA GLU LEU LEU ALA ILE ALA SEQRES 13 A 341 ALA ARG GLN LYS ALA SER GLY GLY LEU LEU LEU VAL ASP SEQRES 14 A 341 GLU ALA PHE GLY ASP LEU GLU PRO GLN LEU SER VAL ALA SEQRES 15 A 341 GLY HIS ALA SER GLY GLN GLY ASN LEU ILE VAL PHE ARG SEQRES 16 A 341 SER PHE GLY LYS PHE PHE GLY LEU ALA GLY LEU ARG LEU SEQRES 17 A 341 GLY PHE VAL VAL ALA THR GLU PRO VAL LEU ALA SER PHE SEQRES 18 A 341 ALA ASP TRP LEU GLY PRO TRP ALA VAL SER GLY PRO ALA SEQRES 19 A 341 LEU THR ILE SER LYS ALA LEU MET GLN GLY ASP THR LYS SEQRES 20 A 341 ALA ILE ALA ALA GLY ILE LEU GLU ARG ARG ALA GLY LEU SEQRES 21 A 341 ASP ALA ALA LEU ASP GLY ALA GLY LEU ASN ARG ILE GLY SEQRES 22 A 341 GLY THR GLY LEU PHE VAL LEU VAL GLU HIS PRO ARG ALA SEQRES 23 A 341 ALA LEU LEU GLN GLU ARG LEU CYS GLU ALA HIS ILE LEU SEQRES 24 A 341 THR ARG LYS PHE ASP TYR ALA PRO THR TRP LEU ARG VAL SEQRES 25 A 341 GLY LEU ALA PRO ASP ALA ALA GLY ASP ARG ARG LEU ALA SEQRES 26 A 341 ASP ALA LEU ALA ARG MET GLU LEU LEU GLU HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET 33P A 404 24 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET CL A 413 1 HET CL A 414 1 HET CL A 415 1 HET NA A 416 1 HETNAM GOL GLYCEROL HETNAM 33P {3-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 33P YLMETHYL)-AMINO]-2-METHYL-PROPYL}-PHOSPHONIC ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 33P C11 H20 N2 O9 P2 FORMUL 6 SO4 8(O4 S 2-) FORMUL 14 CL 3(CL 1-) FORMUL 17 NA NA 1+ FORMUL 18 HOH *487(H2 O) HELIX 1 AA1 GLY A 10 GLY A 19 1 10 HELIX 2 AA2 ARG A 21 TRP A 25 5 5 HELIX 3 AA3 PRO A 43 ARG A 49 1 7 HELIX 4 AA4 ASP A 52 ARG A 68 1 17 HELIX 5 AA5 GLY A 79 GLN A 85 1 7 HELIX 6 AA6 LEU A 86 ALA A 91 1 6 HELIX 7 AA7 GLY A 105 ALA A 114 1 10 HELIX 8 AA8 ASP A 123 LEU A 127 5 5 HELIX 9 AA9 ALA A 148 ALA A 161 1 14 HELIX 10 AB1 GLU A 176 SER A 180 5 5 HELIX 11 AB2 HIS A 184 GLY A 189 1 6 HELIX 12 AB3 PHE A 197 GLY A 202 1 6 HELIX 13 AB4 THR A 214 GLY A 226 1 13 HELIX 14 AB5 SER A 231 GLY A 244 1 14 HELIX 15 AB6 ASP A 245 ALA A 267 1 23 HELIX 16 AB7 ARG A 285 ALA A 296 1 12 HELIX 17 AB8 ASP A 317 MET A 331 1 15 SHEET 1 AA1 2 LEU A 26 ASP A 27 0 SHEET 2 AA1 2 ILE A 298 LEU A 299 1 O LEU A 299 N LEU A 26 SHEET 1 AA2 7 LEU A 75 VAL A 77 0 SHEET 2 AA2 7 GLY A 209 VAL A 212 -1 O GLY A 209 N VAL A 77 SHEET 3 AA2 7 LEU A 191 SER A 196 -1 N ARG A 195 O PHE A 210 SHEET 4 AA2 7 LEU A 165 ASP A 169 1 N VAL A 168 O ILE A 192 SHEET 5 AA2 7 HIS A 131 VAL A 137 1 N VAL A 134 O LEU A 167 SHEET 6 AA2 7 HIS A 96 PHE A 100 1 N PHE A 100 O ILE A 135 SHEET 7 AA2 7 VAL A 118 VAL A 121 1 O ASP A 119 N VAL A 97 SHEET 1 AA3 4 ASN A 270 THR A 275 0 SHEET 2 AA3 4 PHE A 278 GLU A 282 -1 O LEU A 280 N GLY A 273 SHEET 3 AA3 4 ALA A 306 GLY A 313 -1 O LEU A 310 N VAL A 281 SHEET 4 AA3 4 ARG A 301 PHE A 303 -1 N ARG A 301 O ARG A 311 LINK OG SER A 231 NA NA A 416 1555 1555 3.13 LINK OG SER A 231 NA NA A 416 1555 16555 3.13 LINK NA NA A 416 O HOH A 772 1555 1555 3.10 LINK NA NA A 416 O HOH A 772 1555 16555 3.10 CISPEP 1 GLY A 101 PRO A 102 0 -6.00 CISPEP 2 ASN A 138 PRO A 139 0 -2.54 CISPEP 3 ASN A 141 PRO A 142 0 12.55 CRYST1 160.074 160.074 160.074 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006247 0.00000