data_9JL7 # _entry.id 9JL7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JL7 pdb_00009jl7 10.2210/pdb9jl7/pdb WWPDB D_1300051611 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-03-12 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JL7 _pdbx_database_status.recvd_initial_deposition_date 2024-09-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email mhho@nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, H.J.' 1 ? 'Satange, R.B.' 2 ? 'Hou, M.H.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structural and Functional Insights into Targeting GCCG Sites in the EGFR Promoter by Two DNA Intercalators to Inhibit Breast Cancer Metastasis. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.4c03203 _citation.pdbx_database_id_PubMed 40032551 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chang, C.C.' 1 ? primary 'Li, H.J.' 2 ? primary 'Satange, R.' 3 0000-0002-5150-9363 primary 'Lin, S.M.' 4 ? primary 'Chen, T.L.' 5 ? primary 'Lin, C.C.' 6 ? primary 'Neidle, S.' 7 0000-0003-0622-6548 primary 'Hou, M.H.' 8 0000-0003-4170-1527 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*CP*CP*GP*T)-3') ; 1809.217 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*GP*GP*CP*T)-3') ; 1809.217 1 ? ? ? ? 3 polymer syn 'Actinomycin D' 1291.446 1 ? ? ? ? 4 non-polymer syn DOXORUBICIN 543.519 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 3 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 7 water nat water 18.015 90 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DG)(DC)(DC)(DG)(DT)' AGCCGT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DG)(DC)(DT)' ACGGCT B ? 3 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV G ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 DOXORUBICIN DM2 5 'MANGANESE (II) ION' MN 6 'CHLORIDE ION' CL 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 DT n 3 1 THR n 3 2 DVA n 3 3 PRO n 3 4 SAR n 3 5 MVA n 3 6 PXZ n 3 7 THR n 3 8 DVA n 3 9 PRO n 3 10 SAR n 3 11 MVA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 6 'synthetic construct' ? 32630 ? 2 1 sample 1 6 'synthetic construct' ? 32630 ? 3 1 sample 1 11 'Streptomyces parvulus' ? 146923 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM2 non-polymer . DOXORUBICIN ADRIAMYCIN 'C27 H29 N O11' 543.519 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n B 2 1 DA 1 2 2 DA DA B . n B 2 2 DC 2 3 3 DC DC B . n B 2 3 DG 3 4 4 DG DG B . n B 2 4 DG 4 5 5 DG DG B . n B 2 5 DC 5 6 6 DC DC B . n B 2 6 DT 6 7 7 DT DT B . n C 3 1 THR 1 1 1 THR THR G . n C 3 2 DVA 2 2 2 DVA DVA G . n C 3 3 PRO 3 3 3 PRO PRO G . n C 3 4 SAR 4 4 4 SAR SAR G . n C 3 5 MVA 5 5 5 MVA MVA G . n C 3 6 PXZ 6 6 6 PXZ PXF G . n C 3 7 THR 7 7 7 THR THR G . n C 3 8 DVA 8 8 8 DVA DVA G . n C 3 9 PRO 9 9 9 PRO PRO G . n C 3 10 SAR 10 10 10 SAR SAR G . n C 3 11 MVA 11 11 11 MVA MVA G . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? 2 DM2 ? ? DM2 ? ? 'SUBJECT OF INVESTIGATION' ? 3 DVA ? ? DVA ? ? 'SUBJECT OF INVESTIGATION' ? 4 MVA ? ? MVA ? ? 'SUBJECT OF INVESTIGATION' ? 5 PXZ ? ? PXZ ? ? 'SUBJECT OF INVESTIGATION' ? 6 SAR ? ? SAR ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DM2 1 101 101 DM2 DM2 A . E 5 MN 1 102 2 MN MN A . F 5 MN 1 103 3 MN MN A . G 5 MN 1 101 1 MN MN B . H 6 CL 1 102 2 CL CL B . I 7 HOH 1 201 69 HOH HOH A . I 7 HOH 2 202 64 HOH HOH A . I 7 HOH 3 203 33 HOH HOH A . I 7 HOH 4 204 50 HOH HOH A . I 7 HOH 5 205 41 HOH HOH A . I 7 HOH 6 206 16 HOH HOH A . I 7 HOH 7 207 68 HOH HOH A . I 7 HOH 8 208 6 HOH HOH A . I 7 HOH 9 209 40 HOH HOH A . I 7 HOH 10 210 38 HOH HOH A . I 7 HOH 11 211 8 HOH HOH A . I 7 HOH 12 212 93 HOH HOH A . I 7 HOH 13 213 23 HOH HOH A . I 7 HOH 14 214 78 HOH HOH A . I 7 HOH 15 215 87 HOH HOH A . I 7 HOH 16 216 73 HOH HOH A . I 7 HOH 17 217 15 HOH HOH A . I 7 HOH 18 218 17 HOH HOH A . I 7 HOH 19 219 13 HOH HOH A . I 7 HOH 20 220 12 HOH HOH A . I 7 HOH 21 221 14 HOH HOH A . I 7 HOH 22 222 53 HOH HOH A . I 7 HOH 23 223 46 HOH HOH A . I 7 HOH 24 224 82 HOH HOH A . I 7 HOH 25 225 71 HOH HOH A . I 7 HOH 26 226 37 HOH HOH A . I 7 HOH 27 227 63 HOH HOH A . I 7 HOH 28 228 77 HOH HOH A . I 7 HOH 29 229 85 HOH HOH A . I 7 HOH 30 230 59 HOH HOH A . I 7 HOH 31 231 57 HOH HOH A . I 7 HOH 32 232 67 HOH HOH A . I 7 HOH 33 233 91 HOH HOH A . I 7 HOH 34 234 55 HOH HOH A . I 7 HOH 35 235 26 HOH HOH A . I 7 HOH 36 236 48 HOH HOH A . I 7 HOH 37 237 22 HOH HOH A . I 7 HOH 38 238 80 HOH HOH A . I 7 HOH 39 239 83 HOH HOH A . I 7 HOH 40 240 52 HOH HOH A . I 7 HOH 41 241 44 HOH HOH A . I 7 HOH 42 242 47 HOH HOH A . I 7 HOH 43 243 81 HOH HOH A . I 7 HOH 44 244 58 HOH HOH A . J 7 HOH 1 201 34 HOH HOH B . J 7 HOH 2 202 1 HOH HOH B . J 7 HOH 3 203 43 HOH HOH B . J 7 HOH 4 204 7 HOH HOH B . J 7 HOH 5 205 30 HOH HOH B . J 7 HOH 6 206 45 HOH HOH B . J 7 HOH 7 207 60 HOH HOH B . J 7 HOH 8 208 21 HOH HOH B . J 7 HOH 9 209 2 HOH HOH B . J 7 HOH 10 210 4 HOH HOH B . J 7 HOH 11 211 9 HOH HOH B . J 7 HOH 12 212 10 HOH HOH B . J 7 HOH 13 213 11 HOH HOH B . J 7 HOH 14 214 5 HOH HOH B . J 7 HOH 15 215 3 HOH HOH B . J 7 HOH 16 216 25 HOH HOH B . J 7 HOH 17 217 24 HOH HOH B . J 7 HOH 18 218 51 HOH HOH B . J 7 HOH 19 219 90 HOH HOH B . J 7 HOH 20 220 20 HOH HOH B . J 7 HOH 21 221 56 HOH HOH B . J 7 HOH 22 222 28 HOH HOH B . J 7 HOH 23 223 32 HOH HOH B . J 7 HOH 24 224 62 HOH HOH B . J 7 HOH 25 225 54 HOH HOH B . J 7 HOH 26 226 79 HOH HOH B . J 7 HOH 27 227 27 HOH HOH B . J 7 HOH 28 228 29 HOH HOH B . J 7 HOH 29 229 36 HOH HOH B . J 7 HOH 30 230 70 HOH HOH B . J 7 HOH 31 231 72 HOH HOH B . J 7 HOH 32 232 66 HOH HOH B . J 7 HOH 33 233 76 HOH HOH B . K 7 HOH 1 101 39 HOH HOH G . K 7 HOH 2 102 35 HOH HOH G . K 7 HOH 3 103 42 HOH HOH G . K 7 HOH 4 104 18 HOH HOH G . K 7 HOH 5 105 19 HOH HOH G . K 7 HOH 6 106 61 HOH HOH G . K 7 HOH 7 107 86 HOH HOH G . K 7 HOH 8 108 49 HOH HOH G . K 7 HOH 9 109 89 HOH HOH G . K 7 HOH 10 110 65 HOH HOH G . K 7 HOH 11 111 31 HOH HOH G . K 7 HOH 12 112 84 HOH HOH G . K 7 HOH 13 113 74 HOH HOH G . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A DA 1 ? P ? A DA 1 P 2 1 Y 0 B DA 2 ? P ? B DA 1 P # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 9JL7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.002 _cell.length_a_esd ? _cell.length_b 27.002 _cell.length_b_esd ? _cell.length_c 205.993 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JL7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.125mM duplex oligonucleotide, 0.125mM actinomycin D, 0.125mM doxorubicin, 30mM LiCl, 3mM MnCl2, 25mM MES (pH 6.5), 3% PEG 400' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-08-27 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9JL7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.52 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7813 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 34.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.52 _reflns_shell.d_res_low 1.57 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 729 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 38.8 _reflns_shell.pdbx_chi_squared 1.096 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.455 _reflns_shell.pdbx_Rpim_I_all 0.072 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.994 _reflns_shell.pdbx_CC_star 0.998 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.449 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9JL7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.52 _refine.ls_d_res_low 22.14 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7709 _refine.ls_number_reflns_R_free 772 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.77 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2038 _refine.ls_R_factor_R_free 0.2131 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2025 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.54 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.11 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.52 _refine_hist.d_res_low 22.14 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 469 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 90 _refine_hist.pdbx_number_atoms_nucleic_acid 246 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 409 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.071 ? 617 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 32.737 ? 142 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.987 ? 66 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.016 ? 30 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.52 1.62 . . 121 1091 100.00 . . . . 0.2182 . . . . . . . . . . . 0.2621 'X-RAY DIFFRACTION' 1.62 1.74 . . 124 1107 100.00 . . . . 0.1905 . . . . . . . . . . . 0.2466 'X-RAY DIFFRACTION' 1.74 1.91 . . 125 1126 100.00 . . . . 0.1916 . . . . . . . . . . . 0.2332 'X-RAY DIFFRACTION' 1.92 2.19 . . 126 1131 100.00 . . . . 0.2111 . . . . . . . . . . . 0.2408 'X-RAY DIFFRACTION' 2.19 2.76 . . 132 1189 100.00 . . . . 0.2255 . . . . . . . . . . . 0.2051 'X-RAY DIFFRACTION' 2.76 22.14 . . 144 1293 99.00 . . . . 0.1922 . . . . . . . . . . . 0.1909 # _struct.entry_id 9JL7 _struct.title 'Crystal structure of Actinomycin D-Doxorubicin-d(AGCCGT)2 DNA ternary complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JL7 _struct_keywords.text 'Drug-DNA complex, Actinomycin D, Doxorubicin, DNA, DNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9JL7 9JL7 ? 1 ? 1 2 PDB 9JL7 9JL7 ? 2 ? 1 3 NOR 9JL7 NOR00228 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JL7 A 1 ? 6 ? 9JL7 1 ? 6 ? 1 6 2 2 9JL7 B 1 ? 6 ? 9JL7 2 ? 7 ? 2 7 3 3 9JL7 G 1 ? 11 ? 9JL7 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C THR 1 C ? ? ? 1_555 C DVA 2 N ? ? G THR 1 G DVA 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale one ? C THR 1 OG1 ? ? ? 1_555 C MVA 5 C ? ? G THR 1 G MVA 5 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale3 covale both ? C THR 1 N ? ? ? 1_555 C PXZ 6 C0 ? ? G THR 1 G PXZ 6 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale4 covale both ? C DVA 2 C ? ? ? 1_555 C PRO 3 N ? ? G DVA 2 G PRO 3 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale5 covale both ? C PRO 3 C ? ? ? 1_555 C SAR 4 N ? ? G PRO 3 G SAR 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? C SAR 4 C ? ? ? 1_555 C MVA 5 N ? ? G SAR 4 G MVA 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? C PXZ 6 "C0'" ? ? ? 1_555 C THR 7 N ? ? G PXZ 6 G THR 7 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale8 covale both ? C THR 7 C ? ? ? 1_555 C DVA 8 N ? ? G THR 7 G DVA 8 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale9 covale one ? C THR 7 OG1 ? ? ? 1_555 C MVA 11 C ? ? G THR 7 G MVA 11 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale10 covale both ? C DVA 8 C ? ? ? 1_555 C PRO 9 N ? ? G DVA 8 G PRO 9 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale11 covale both ? C PRO 9 C ? ? ? 1_555 C SAR 10 N ? ? G PRO 9 G SAR 10 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? C SAR 10 C ? ? ? 1_555 C MVA 11 N ? ? G SAR 10 G MVA 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 F MN . MN ? ? A DG 5 A MN 103 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc2 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc3 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 216 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc5 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 240 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc6 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 241 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc7 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 242 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc8 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 210 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc9 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 212 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc10 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 213 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc11 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 222 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc12 metalc ? ? F MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 235 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc13 metalc ? ? I HOH . O ? ? ? 1_555 G MN . MN ? ? A HOH 219 B MN 101 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc14 metalc ? ? B DG 3 N7 ? ? ? 1_555 G MN . MN ? ? B DG 4 B MN 101 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc15 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc16 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 101 B HOH 217 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc17 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 101 B HOH 220 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc18 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 101 B HOH 228 1_555 ? ? ? ? ? ? ? 2.102 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 4 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 4 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 4 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 6 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 6 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 5 ? A DG 5 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 101.2 ? 2 N7 ? A DG 5 ? A DG 5 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 71.8 ? 3 O ? I HOH . ? A HOH 210 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 169.7 ? 4 N7 ? A DG 5 ? A DG 5 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 94.2 ? 5 O ? I HOH . ? A HOH 210 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 87.2 ? 6 O ? I HOH . ? A HOH 212 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 85.7 ? 7 N7 ? A DG 5 ? A DG 5 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 83.0 ? 8 O ? I HOH . ? A HOH 210 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 99.7 ? 9 O ? I HOH . ? A HOH 212 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 87.2 ? 10 O ? I HOH . ? A HOH 213 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 172.9 ? 11 N7 ? A DG 5 ? A DG 5 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 235 ? 1_555 175.0 ? 12 O ? I HOH . ? A HOH 210 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 235 ? 1_555 83.5 ? 13 O ? I HOH . ? A HOH 212 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 235 ? 1_555 103.3 ? 14 O ? I HOH . ? A HOH 213 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 235 ? 1_555 84.5 ? 15 O ? I HOH . ? A HOH 222 ? 1_555 MN ? F MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 235 ? 1_555 97.7 ? 16 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 89.2 ? 17 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 85.6 ? 18 O ? I HOH . ? A HOH 208 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 94.2 ? 19 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_555 81.7 ? 20 O ? I HOH . ? A HOH 208 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_555 167.7 ? 21 O ? I HOH . ? A HOH 216 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_555 93.4 ? 22 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 103.2 ? 23 O ? I HOH . ? A HOH 208 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 81.4 ? 24 O ? I HOH . ? A HOH 216 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 170.0 ? 25 O ? I HOH . ? A HOH 240 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 241 ? 1_555 92.5 ? 26 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 171.8 ? 27 O ? I HOH . ? A HOH 208 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 98.9 ? 28 O ? I HOH . ? A HOH 216 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 92.6 ? 29 O ? I HOH . ? A HOH 240 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 90.5 ? 30 O ? I HOH . ? A HOH 241 ? 1_555 MN ? E MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 242 ? 1_555 79.4 ? 31 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 N7 ? B DG 3 ? B DG 4 ? 1_555 83.0 ? 32 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 202 ? 1_555 88.9 ? 33 N7 ? B DG 3 ? B DG 4 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 202 ? 1_555 90.3 ? 34 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 167.5 ? 35 N7 ? B DG 3 ? B DG 4 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 89.6 ? 36 O ? J HOH . ? B HOH 202 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 81.0 ? 37 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 106.5 ? 38 N7 ? B DG 3 ? B DG 4 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 87.5 ? 39 O ? J HOH . ? B HOH 202 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 164.0 ? 40 O ? J HOH . ? B HOH 217 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 220 ? 1_555 83.2 ? 41 O ? I HOH . ? A HOH 219 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 228 ? 1_555 97.8 ? 42 N7 ? B DG 3 ? B DG 4 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 228 ? 1_555 178.4 ? 43 O ? J HOH . ? B HOH 202 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 228 ? 1_555 91.1 ? 44 O ? J HOH . ? B HOH 217 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 228 ? 1_555 89.8 ? 45 O ? J HOH . ? B HOH 220 ? 1_555 MN ? G MN . ? B MN 101 ? 1_555 O ? J HOH . ? B HOH 228 ? 1_555 90.9 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR C 4 ? . . . . SAR G 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA C 5 ? . . . . MVA G 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR C 10 ? . . . . SAR G 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA C 11 ? . . . . MVA G 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 PXZ C 6 ? . . . . PXZ G 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 6 THR C 1 ? MVA C 5 ? THR G 1 ? 1_555 MVA G 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 7 THR C 1 ? PXZ C 6 ? THR G 1 ? 1_555 PXZ G 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 8 THR C 7 ? MVA C 11 ? THR G 7 ? 1_555 MVA G 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 C . ? DVA 2 G PRO 3 C ? PRO 3 G 1 13.35 2 PRO 3 C . ? PRO 3 G SAR 4 C ? SAR 4 G 1 -4.44 3 DVA 8 C . ? DVA 8 G PRO 9 C ? PRO 9 G 1 14.84 4 PRO 9 C . ? PRO 9 G SAR 10 C ? SAR 10 G 1 -8.89 # _pdbx_entry_details.entry_id 9JL7 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 G _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 G _pdbx_validate_close_contact.auth_comp_id_2 MVA _pdbx_validate_close_contact.auth_seq_id_2 5 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.64 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.34 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000001 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B CL 102 ? H CL . 2 1 B HOH 210 ? J HOH . 3 1 B HOH 219 ? J HOH . 4 1 G HOH 113 ? K HOH . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 244 ? 6.34 . 2 1 O ? B HOH 233 ? 6.14 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CL CL CL N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DM2 C1 C Y N 109 DM2 C2 C Y N 110 DM2 C3 C Y N 111 DM2 C4 C Y N 112 DM2 O4 O N N 113 DM2 C5 C Y N 114 DM2 C6 C N N 115 DM2 O6 O N N 116 DM2 C7 C Y N 117 DM2 C8 C Y N 118 DM2 O8 O N N 119 DM2 C9 C Y N 120 DM2 C10 C N S 121 DM2 O10 O N N 122 DM2 C11 C N N 123 DM2 C12 C N S 124 DM2 O12 O N N 125 DM2 C13 C N N 126 DM2 O13 O N N 127 DM2 C14 C N N 128 DM2 O14 O N N 129 DM2 C15 C N N 130 DM2 C16 C Y N 131 DM2 C17 C Y N 132 DM2 O17 O N N 133 DM2 C18 C Y N 134 DM2 C19 C N N 135 DM2 O19 O N N 136 DM2 C20 C Y N 137 DM2 C21 C N N 138 DM2 "C1'" C N R 139 DM2 "C2'" C N N 140 DM2 "C3'" C N S 141 DM2 "N3'" N N N 142 DM2 "C4'" C N S 143 DM2 "O4'" O N N 144 DM2 "C5'" C N S 145 DM2 "O5'" O N N 146 DM2 "C6'" C N N 147 DM2 H1 H N N 148 DM2 H2 H N N 149 DM2 H3 H N N 150 DM2 HO8 H N N 151 DM2 H10 H N N 152 DM2 H111 H N N 153 DM2 H112 H N N 154 DM2 HO12 H N N 155 DM2 H141 H N N 156 DM2 H142 H N N 157 DM2 HO14 H N N 158 DM2 H151 H N N 159 DM2 H152 H N N 160 DM2 HO17 H N N 161 DM2 H211 H N N 162 DM2 H212 H N N 163 DM2 H213 H N N 164 DM2 "H1'" H N N 165 DM2 "H2'1" H N N 166 DM2 "H2'2" H N N 167 DM2 "H3'" H N N 168 DM2 "HN'1" H N N 169 DM2 "HN'2" H N N 170 DM2 "H4'" H N N 171 DM2 "HO4'" H N N 172 DM2 "H5'" H N N 173 DM2 "H6'1" H N N 174 DM2 "H6'2" H N N 175 DM2 "H6'3" H N N 176 DT OP3 O N N 177 DT P P N N 178 DT OP1 O N N 179 DT OP2 O N N 180 DT "O5'" O N N 181 DT "C5'" C N N 182 DT "C4'" C N R 183 DT "O4'" O N N 184 DT "C3'" C N S 185 DT "O3'" O N N 186 DT "C2'" C N N 187 DT "C1'" C N R 188 DT N1 N N N 189 DT C2 C N N 190 DT O2 O N N 191 DT N3 N N N 192 DT C4 C N N 193 DT O4 O N N 194 DT C5 C N N 195 DT C7 C N N 196 DT C6 C N N 197 DT HOP3 H N N 198 DT HOP2 H N N 199 DT "H5'" H N N 200 DT "H5''" H N N 201 DT "H4'" H N N 202 DT "H3'" H N N 203 DT "HO3'" H N N 204 DT "H2'" H N N 205 DT "H2''" H N N 206 DT "H1'" H N N 207 DT H3 H N N 208 DT H71 H N N 209 DT H72 H N N 210 DT H73 H N N 211 DT H6 H N N 212 DVA N N N N 213 DVA CA C N R 214 DVA CB C N N 215 DVA CG1 C N N 216 DVA CG2 C N N 217 DVA C C N N 218 DVA O O N N 219 DVA OXT O N N 220 DVA H H N N 221 DVA H2 H N N 222 DVA HA H N N 223 DVA HB H N N 224 DVA HG11 H N N 225 DVA HG12 H N N 226 DVA HG13 H N N 227 DVA HG21 H N N 228 DVA HG22 H N N 229 DVA HG23 H N N 230 DVA HXT H N N 231 HOH O O N N 232 HOH H1 H N N 233 HOH H2 H N N 234 MN MN MN N N 235 MVA N N N N 236 MVA CN C N N 237 MVA CA C N S 238 MVA CB C N N 239 MVA CG1 C N N 240 MVA CG2 C N N 241 MVA C C N N 242 MVA O O N N 243 MVA OXT O N N 244 MVA H H N N 245 MVA HN1 H N N 246 MVA HN2 H N N 247 MVA HN3 H N N 248 MVA HA H N N 249 MVA HB H N N 250 MVA HG11 H N N 251 MVA HG12 H N N 252 MVA HG13 H N N 253 MVA HG21 H N N 254 MVA HG22 H N N 255 MVA HG23 H N N 256 MVA HXT H N N 257 PRO N N N N 258 PRO CA C N S 259 PRO C C N N 260 PRO O O N N 261 PRO CB C N N 262 PRO CG C N N 263 PRO CD C N N 264 PRO OXT O N N 265 PRO H H N N 266 PRO HA H N N 267 PRO HB2 H N N 268 PRO HB3 H N N 269 PRO HG2 H N N 270 PRO HG3 H N N 271 PRO HD2 H N N 272 PRO HD3 H N N 273 PRO HXT H N N 274 PXZ C1 C N N 275 PXZ C0 C N N 276 PXZ O1 O N N 277 PXZ C2 C N N 278 PXZ N2 N N N 279 PXZ C3 C N N 280 PXZ O3 O N N 281 PXZ C4 C N N 282 PXZ O5 O N N 283 PXZ C6 C Y N 284 PXZ C7 C Y N 285 PXZ C8 C Y N 286 PXZ C9 C Y N 287 PXZ "C0'" C N N 288 PXZ "O1'" O N N 289 PXZ N10 N N N 290 PXZ C11 C N N 291 PXZ C12 C N N 292 PXZ C13 C Y N 293 PXZ C14 C Y N 294 PXZ C15 C N N 295 PXZ C16 C N N 296 PXZ HN21 H N N 297 PXZ HN22 H N N 298 PXZ H7 H N N 299 PXZ H8 H N N 300 PXZ H151 H N N 301 PXZ H152 H N N 302 PXZ H153 H N N 303 PXZ H161 H N N 304 PXZ H162 H N N 305 PXZ H163 H N N 306 PXZ "OXT'" O N N 307 PXZ OXT O N N 308 PXZ "HXT'" H N N 309 PXZ HXT H N N 310 SAR N N N N 311 SAR CA C N N 312 SAR C C N N 313 SAR O O N N 314 SAR CN C N N 315 SAR OXT O N N 316 SAR H H N N 317 SAR HA2 H N N 318 SAR HA3 H N N 319 SAR HN1 H N N 320 SAR HN2 H N N 321 SAR HN3 H N N 322 SAR HXT H N N 323 THR N N N N 324 THR CA C N S 325 THR C C N N 326 THR O O N N 327 THR CB C N R 328 THR OG1 O N N 329 THR CG2 C N N 330 THR OXT O N N 331 THR H H N N 332 THR H2 H N N 333 THR HA H N N 334 THR HB H N N 335 THR HG1 H N N 336 THR HG21 H N N 337 THR HG22 H N N 338 THR HG23 H N N 339 THR HXT H N N 340 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM2 C1 C2 doub Y N 113 DM2 C1 C20 sing Y N 114 DM2 C1 H1 sing N N 115 DM2 C2 C3 sing Y N 116 DM2 C2 H2 sing N N 117 DM2 C3 C4 doub Y N 118 DM2 C3 H3 sing N N 119 DM2 C4 O4 sing N N 120 DM2 C4 C5 sing Y N 121 DM2 O4 C21 sing N N 122 DM2 C5 C6 sing N N 123 DM2 C5 C20 doub Y N 124 DM2 C6 O6 doub N N 125 DM2 C6 C7 sing N N 126 DM2 C7 C8 doub Y N 127 DM2 C7 C18 sing Y N 128 DM2 C8 O8 sing N N 129 DM2 C8 C9 sing Y N 130 DM2 O8 HO8 sing N N 131 DM2 C9 C10 sing N N 132 DM2 C9 C16 doub Y N 133 DM2 C10 O10 sing N N 134 DM2 C10 C11 sing N N 135 DM2 C10 H10 sing N N 136 DM2 O10 "C1'" sing N N 137 DM2 C11 C12 sing N N 138 DM2 C11 H111 sing N N 139 DM2 C11 H112 sing N N 140 DM2 C12 O12 sing N N 141 DM2 C12 C13 sing N N 142 DM2 C12 C15 sing N N 143 DM2 O12 HO12 sing N N 144 DM2 C13 O13 doub N N 145 DM2 C13 C14 sing N N 146 DM2 C14 O14 sing N N 147 DM2 C14 H141 sing N N 148 DM2 C14 H142 sing N N 149 DM2 O14 HO14 sing N N 150 DM2 C15 C16 sing N N 151 DM2 C15 H151 sing N N 152 DM2 C15 H152 sing N N 153 DM2 C16 C17 sing Y N 154 DM2 C17 O17 sing N N 155 DM2 C17 C18 doub Y N 156 DM2 O17 HO17 sing N N 157 DM2 C18 C19 sing N N 158 DM2 C19 O19 doub N N 159 DM2 C19 C20 sing N N 160 DM2 C21 H211 sing N N 161 DM2 C21 H212 sing N N 162 DM2 C21 H213 sing N N 163 DM2 "C1'" "C2'" sing N N 164 DM2 "C1'" "O5'" sing N N 165 DM2 "C1'" "H1'" sing N N 166 DM2 "C2'" "C3'" sing N N 167 DM2 "C2'" "H2'1" sing N N 168 DM2 "C2'" "H2'2" sing N N 169 DM2 "C3'" "N3'" sing N N 170 DM2 "C3'" "C4'" sing N N 171 DM2 "C3'" "H3'" sing N N 172 DM2 "N3'" "HN'1" sing N N 173 DM2 "N3'" "HN'2" sing N N 174 DM2 "C4'" "O4'" sing N N 175 DM2 "C4'" "C5'" sing N N 176 DM2 "C4'" "H4'" sing N N 177 DM2 "O4'" "HO4'" sing N N 178 DM2 "C5'" "O5'" sing N N 179 DM2 "C5'" "C6'" sing N N 180 DM2 "C5'" "H5'" sing N N 181 DM2 "C6'" "H6'1" sing N N 182 DM2 "C6'" "H6'2" sing N N 183 DM2 "C6'" "H6'3" sing N N 184 DT OP3 P sing N N 185 DT OP3 HOP3 sing N N 186 DT P OP1 doub N N 187 DT P OP2 sing N N 188 DT P "O5'" sing N N 189 DT OP2 HOP2 sing N N 190 DT "O5'" "C5'" sing N N 191 DT "C5'" "C4'" sing N N 192 DT "C5'" "H5'" sing N N 193 DT "C5'" "H5''" sing N N 194 DT "C4'" "O4'" sing N N 195 DT "C4'" "C3'" sing N N 196 DT "C4'" "H4'" sing N N 197 DT "O4'" "C1'" sing N N 198 DT "C3'" "O3'" sing N N 199 DT "C3'" "C2'" sing N N 200 DT "C3'" "H3'" sing N N 201 DT "O3'" "HO3'" sing N N 202 DT "C2'" "C1'" sing N N 203 DT "C2'" "H2'" sing N N 204 DT "C2'" "H2''" sing N N 205 DT "C1'" N1 sing N N 206 DT "C1'" "H1'" sing N N 207 DT N1 C2 sing N N 208 DT N1 C6 sing N N 209 DT C2 O2 doub N N 210 DT C2 N3 sing N N 211 DT N3 C4 sing N N 212 DT N3 H3 sing N N 213 DT C4 O4 doub N N 214 DT C4 C5 sing N N 215 DT C5 C7 sing N N 216 DT C5 C6 doub N N 217 DT C7 H71 sing N N 218 DT C7 H72 sing N N 219 DT C7 H73 sing N N 220 DT C6 H6 sing N N 221 DVA N CA sing N N 222 DVA N H sing N N 223 DVA N H2 sing N N 224 DVA CA CB sing N N 225 DVA CA C sing N N 226 DVA CA HA sing N N 227 DVA CB CG1 sing N N 228 DVA CB CG2 sing N N 229 DVA CB HB sing N N 230 DVA CG1 HG11 sing N N 231 DVA CG1 HG12 sing N N 232 DVA CG1 HG13 sing N N 233 DVA CG2 HG21 sing N N 234 DVA CG2 HG22 sing N N 235 DVA CG2 HG23 sing N N 236 DVA C O doub N N 237 DVA C OXT sing N N 238 DVA OXT HXT sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 MVA N CN sing N N 242 MVA N CA sing N N 243 MVA N H sing N N 244 MVA CN HN1 sing N N 245 MVA CN HN2 sing N N 246 MVA CN HN3 sing N N 247 MVA CA CB sing N N 248 MVA CA C sing N N 249 MVA CA HA sing N N 250 MVA CB CG1 sing N N 251 MVA CB CG2 sing N N 252 MVA CB HB sing N N 253 MVA CG1 HG11 sing N N 254 MVA CG1 HG12 sing N N 255 MVA CG1 HG13 sing N N 256 MVA CG2 HG21 sing N N 257 MVA CG2 HG22 sing N N 258 MVA CG2 HG23 sing N N 259 MVA C O doub N N 260 MVA C OXT sing N N 261 MVA OXT HXT sing N N 262 PRO N CA sing N N 263 PRO N CD sing N N 264 PRO N H sing N N 265 PRO CA C sing N N 266 PRO CA CB sing N N 267 PRO CA HA sing N N 268 PRO C O doub N N 269 PRO C OXT sing N N 270 PRO CB CG sing N N 271 PRO CB HB2 sing N N 272 PRO CB HB3 sing N N 273 PRO CG CD sing N N 274 PRO CG HG2 sing N N 275 PRO CG HG3 sing N N 276 PRO CD HD2 sing N N 277 PRO CD HD3 sing N N 278 PRO OXT HXT sing N N 279 PXZ C1 C0 sing N N 280 PXZ C1 C2 doub N N 281 PXZ C1 C11 sing N N 282 PXZ C0 O1 doub N N 283 PXZ C2 N2 sing N N 284 PXZ C2 C3 sing N N 285 PXZ N2 HN21 sing N N 286 PXZ N2 HN22 sing N N 287 PXZ C3 O3 doub N N 288 PXZ C3 C4 sing N N 289 PXZ C4 C12 doub N N 290 PXZ C4 C15 sing N N 291 PXZ O5 C12 sing N N 292 PXZ O5 C13 sing N N 293 PXZ C6 C7 doub Y N 294 PXZ C6 C13 sing Y N 295 PXZ C6 C16 sing N N 296 PXZ C7 C8 sing Y N 297 PXZ C7 H7 sing N N 298 PXZ C8 C9 doub Y N 299 PXZ C8 H8 sing N N 300 PXZ C9 "C0'" sing N N 301 PXZ C9 C14 sing Y N 302 PXZ "C0'" "O1'" doub N N 303 PXZ N10 C11 doub N N 304 PXZ N10 C14 sing N N 305 PXZ C11 C12 sing N N 306 PXZ C13 C14 doub Y N 307 PXZ C15 H151 sing N N 308 PXZ C15 H152 sing N N 309 PXZ C15 H153 sing N N 310 PXZ C16 H161 sing N N 311 PXZ C16 H162 sing N N 312 PXZ C16 H163 sing N N 313 PXZ "C0'" "OXT'" sing N N 314 PXZ C0 OXT sing N N 315 PXZ "OXT'" "HXT'" sing N N 316 PXZ OXT HXT sing N N 317 SAR N CA sing N N 318 SAR N CN sing N N 319 SAR N H sing N N 320 SAR CA C sing N N 321 SAR CA HA2 sing N N 322 SAR CA HA3 sing N N 323 SAR C O doub N N 324 SAR C OXT sing N N 325 SAR CN HN1 sing N N 326 SAR CN HN2 sing N N 327 SAR CN HN3 sing N N 328 SAR OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 # _ndb_struct_conf_na.entry_id 9JL7 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 6 1_555 0.110 -0.124 -0.030 -2.861 -7.507 4.148 1 A_DA1:DT7_B A 1 ? B 7 ? 20 1 1 A DG 2 1_555 B DC 5 1_555 -0.376 -0.106 0.644 13.704 8.279 2.461 2 A_DG2:DC6_B A 2 ? B 6 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.355 -0.180 0.314 -2.058 6.289 -0.261 3 A_DC3:DG5_B A 3 ? B 5 ? 19 1 1 A DC 4 1_555 B DG 3 1_555 0.117 -0.099 -0.101 13.576 -2.751 1.775 4 A_DC4:DG4_B A 4 ? B 4 ? 19 1 1 A DG 5 1_555 B DC 2 1_555 -0.187 -0.063 -0.271 -12.281 5.257 2.108 5 A_DG5:DC3_B A 5 ? B 3 ? 19 1 1 A DT 6 1_555 B DA 1 1_555 -0.171 -0.122 0.144 3.729 -4.166 1.549 6 A_DT6:DA2_B A 6 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 6 1_555 A DG 2 1_555 B DC 5 1_555 0.594 0.592 2.904 -5.391 9.345 20.457 -1.477 -3.189 2.675 24.256 13.992 23.100 1 AA_DA1DG2:DC6DT7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 3 1_555 B DG 4 1_555 A DC 4 1_555 B DG 3 1_555 0.823 0.408 2.921 4.762 4.073 29.890 0.030 -0.691 3.041 7.789 -9.106 30.525 2 AA_DC3DC4:DG4DG5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DC 4 1_555 B DG 3 1_555 A DG 5 1_555 B DC 2 1_555 1.338 0.936 6.972 0.496 -3.982 31.425 3.269 -2.257 6.824 -7.315 -0.910 31.674 3 AA_DC4DG5:DC3DG4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DG 5 1_555 B DC 2 1_555 A DT 6 1_555 B DA 1 1_555 -0.968 -0.141 3.079 -4.709 -6.038 28.086 1.004 0.925 3.157 -12.158 9.482 29.091 4 AA_DG5DT6:DA2DC3_BB A 5 ? B 3 ? A 6 ? B 2 ? # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 109-2628-M-005-001-MY4 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D12 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9JL7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.037034 _atom_sites.fract_transf_matrix[1][2] 0.021382 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042764 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004855 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL MN N O P # loop_