HEADER CELL ADHESION 29-SEP-24 9JRQ TITLE PILIN PILA FROM BURKHOLDERIA THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILIN (BACTERIAL FILAMENT) SUBFAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 57975; SOURCE 4 GENE: BTH_I0649; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-32B KEYWDS PILIN, BURKHOLDERIA THAILANDENSIS, ADHESION PROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR T.LOTANGCHANINTRA,K.WANGKANONT REVDAT 1 01-OCT-25 9JRQ 0 JRNL AUTH T.LOTANGCHANINTRA,K.WANGKANONT JRNL TITL PILIN PILA FROM BURKHOLDERIA THAILANDENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 66562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8500 - 3.5500 1.00 2825 175 0.1474 0.1876 REMARK 3 2 3.5500 - 2.8200 1.00 2801 142 0.1598 0.1807 REMARK 3 3 2.8200 - 2.4600 1.00 2779 159 0.1617 0.1963 REMARK 3 4 2.4600 - 2.2400 1.00 2820 131 0.1556 0.1960 REMARK 3 5 2.2400 - 2.0800 1.00 2785 138 0.1544 0.1898 REMARK 3 6 2.0800 - 1.9600 1.00 2764 156 0.1473 0.1589 REMARK 3 7 1.9600 - 1.8600 1.00 2783 131 0.1508 0.1824 REMARK 3 8 1.8600 - 1.7800 1.00 2735 148 0.1501 0.1712 REMARK 3 9 1.7800 - 1.7100 1.00 2756 152 0.1445 0.1698 REMARK 3 10 1.7100 - 1.6500 1.00 2802 138 0.1431 0.1784 REMARK 3 11 1.6500 - 1.6000 1.00 2735 130 0.1403 0.1799 REMARK 3 12 1.6000 - 1.5500 1.00 2776 138 0.1376 0.1682 REMARK 3 13 1.5500 - 1.5100 1.00 2727 150 0.1337 0.1709 REMARK 3 14 1.5100 - 1.4700 1.00 2741 147 0.1347 0.1820 REMARK 3 15 1.4700 - 1.4400 0.99 2780 138 0.1406 0.1712 REMARK 3 16 1.4400 - 1.4100 0.99 2728 145 0.1564 0.2249 REMARK 3 17 1.4100 - 1.3800 0.99 2735 149 0.1699 0.2155 REMARK 3 18 1.3800 - 1.3600 0.99 2739 135 0.1668 0.1926 REMARK 3 19 1.3600 - 1.3300 0.99 2719 152 0.1724 0.2166 REMARK 3 20 1.3300 - 1.3100 0.99 2722 134 0.1786 0.2390 REMARK 3 21 1.3100 - 1.2900 0.99 2682 146 0.1922 0.2489 REMARK 3 22 1.2900 - 1.2700 0.98 2798 114 0.2098 0.2503 REMARK 3 23 1.2700 - 1.2500 0.93 2558 124 0.2274 0.2483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.109 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2197 REMARK 3 ANGLE : 0.867 3025 REMARK 3 CHIRALITY : 0.079 347 REMARK 3 PLANARITY : 0.007 409 REMARK 3 DIHEDRAL : 20.403 776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1300051536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 1.8 M AMMONIUM SULFATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.40500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 GLY B 21 DBREF 9JRQ A 23 167 UNP Q2T0U4 Q2T0U4_BURTA 63 207 DBREF 9JRQ B 23 167 UNP Q2T0U4 Q2T0U4_BURTA 63 207 SEQADV 9JRQ GLY A 21 UNP Q2T0U4 EXPRESSION TAG SEQADV 9JRQ SER A 22 UNP Q2T0U4 EXPRESSION TAG SEQADV 9JRQ GLY B 21 UNP Q2T0U4 EXPRESSION TAG SEQADV 9JRQ SER B 22 UNP Q2T0U4 EXPRESSION TAG SEQRES 1 A 147 GLY SER ALA TYR GLN ASP TYR LEU ALA ARG SER ARG VAL SEQRES 2 A 147 GLY GLU GLY LEU ALA LEU ALA ALA SER ALA ARG LEU ALA SEQRES 3 A 147 VAL ALA GLU ASN ALA ALA SER GLY ASN GLY PHE SER GLY SEQRES 4 A 147 GLY TYR VAL SER PRO PRO ALA THR ARG ASN VAL GLU SER SEQRES 5 A 147 ILE ARG ILE ASP ASP ASP THR GLY GLN ILE ALA ILE ALA SEQRES 6 A 147 PHE THR ALA ARG VAL ALA ALA ALA GLY ALA ASN THR LEU SEQRES 7 A 147 VAL LEU VAL PRO SER VAL PRO ASP GLN ALA ASP THR PRO SEQRES 8 A 147 THR ALA ARG VAL ALA LEU SER LYS GLY VAL ILE GLN ALA SEQRES 9 A 147 GLY THR ILE THR TRP GLU CYS PHE ALA GLY ASP LYS ALA SEQRES 10 A 147 SER SER SER LEU PRO ALA PRO GLY ALA GLY PRO MET PRO SEQRES 11 A 147 THR ASP ALA PRO THR LEU ALA GLY LYS LEU ALA PRO PRO SEQRES 12 A 147 GLU CYS ARG ALA SEQRES 1 B 147 GLY SER ALA TYR GLN ASP TYR LEU ALA ARG SER ARG VAL SEQRES 2 B 147 GLY GLU GLY LEU ALA LEU ALA ALA SER ALA ARG LEU ALA SEQRES 3 B 147 VAL ALA GLU ASN ALA ALA SER GLY ASN GLY PHE SER GLY SEQRES 4 B 147 GLY TYR VAL SER PRO PRO ALA THR ARG ASN VAL GLU SER SEQRES 5 B 147 ILE ARG ILE ASP ASP ASP THR GLY GLN ILE ALA ILE ALA SEQRES 6 B 147 PHE THR ALA ARG VAL ALA ALA ALA GLY ALA ASN THR LEU SEQRES 7 B 147 VAL LEU VAL PRO SER VAL PRO ASP GLN ALA ASP THR PRO SEQRES 8 B 147 THR ALA ARG VAL ALA LEU SER LYS GLY VAL ILE GLN ALA SEQRES 9 B 147 GLY THR ILE THR TRP GLU CYS PHE ALA GLY ASP LYS ALA SEQRES 10 B 147 SER SER SER LEU PRO ALA PRO GLY ALA GLY PRO MET PRO SEQRES 11 B 147 THR ASP ALA PRO THR LEU ALA GLY LYS LEU ALA PRO PRO SEQRES 12 B 147 GLU CYS ARG ALA HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET GOL B 206 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *413(H2 O) HELIX 1 AA1 SER A 22 ALA A 40 1 19 HELIX 2 AA2 ALA A 40 GLY A 54 1 15 HELIX 3 AA3 ALA A 157 ALA A 161 5 5 HELIX 4 AA4 PRO A 162 ARG A 166 5 5 HELIX 5 AA5 ALA B 23 ALA B 40 1 18 HELIX 6 AA6 ALA B 40 GLY B 54 1 15 HELIX 7 AA7 ALA B 157 ALA B 161 5 5 HELIX 8 AA8 PRO B 162 ARG B 166 5 5 SHEET 1 AA1 4 VAL A 70 ILE A 75 0 SHEET 2 AA1 4 ILE A 82 PHE A 86 -1 O ALA A 85 N SER A 72 SHEET 3 AA1 4 THR A 97 PRO A 105 -1 O LEU A 98 N ILE A 84 SHEET 4 AA1 4 ARG A 114 ALA A 116 -1 O VAL A 115 N VAL A 104 SHEET 1 AA2 4 VAL A 70 ILE A 75 0 SHEET 2 AA2 4 ILE A 82 PHE A 86 -1 O ALA A 85 N SER A 72 SHEET 3 AA2 4 THR A 97 PRO A 105 -1 O LEU A 98 N ILE A 84 SHEET 4 AA2 4 THR A 128 PHE A 132 -1 O GLU A 130 N VAL A 101 SHEET 1 AA3 4 VAL B 70 ILE B 75 0 SHEET 2 AA3 4 ILE B 82 PHE B 86 -1 O ALA B 85 N SER B 72 SHEET 3 AA3 4 THR B 97 PRO B 105 -1 O LEU B 98 N ILE B 84 SHEET 4 AA3 4 ARG B 114 ALA B 116 -1 O VAL B 115 N VAL B 104 SHEET 1 AA4 4 VAL B 70 ILE B 75 0 SHEET 2 AA4 4 ILE B 82 PHE B 86 -1 O ALA B 85 N SER B 72 SHEET 3 AA4 4 THR B 97 PRO B 105 -1 O LEU B 98 N ILE B 84 SHEET 4 AA4 4 THR B 128 PHE B 132 -1 O GLU B 130 N VAL B 101 SSBOND 1 CYS A 131 CYS A 165 1555 1555 2.06 SSBOND 2 CYS B 131 CYS B 165 1555 1555 2.05 CISPEP 1 ALA A 143 PRO A 144 0 8.74 CISPEP 2 ALA B 143 PRO B 144 0 9.28 CRYST1 32.160 52.810 73.030 90.00 97.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031095 0.000000 0.004265 0.00000 SCALE2 0.000000 0.018936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013821 0.00000 CONECT 819 1049 CONECT 1049 819 CONECT 1870 2100 CONECT 2100 1870 CONECT 2119 2120 2121 2122 2123 CONECT 2120 2119 CONECT 2121 2119 CONECT 2122 2119 CONECT 2123 2119 CONECT 2124 2125 2126 2127 2128 CONECT 2125 2124 CONECT 2126 2124 CONECT 2127 2124 CONECT 2128 2124 CONECT 2129 2130 2131 2132 2133 CONECT 2130 2129 CONECT 2131 2129 CONECT 2132 2129 CONECT 2133 2129 CONECT 2134 2135 2136 2137 2138 CONECT 2135 2134 CONECT 2136 2134 CONECT 2137 2134 CONECT 2138 2134 CONECT 2139 2140 2141 2142 2143 CONECT 2140 2139 CONECT 2141 2139 CONECT 2142 2139 CONECT 2143 2139 CONECT 2144 2145 2146 2147 2148 CONECT 2145 2144 CONECT 2146 2144 CONECT 2147 2144 CONECT 2148 2144 CONECT 2149 2150 2151 2152 2153 CONECT 2150 2149 CONECT 2151 2149 CONECT 2152 2149 CONECT 2153 2149 CONECT 2154 2155 2156 CONECT 2155 2154 CONECT 2156 2154 2157 2158 CONECT 2157 2156 CONECT 2158 2156 2159 CONECT 2159 2158 MASTER 227 0 8 8 16 0 0 6 2506 2 45 24 END