HEADER CELL ADHESION 10-OCT-24 9JW7 TITLE PILIN PILA FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI K96243; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 GENE: PILA, Y036_1241; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-32B KEYWDS PILIN, BURKHOLDERIA PSEUDOMALLEI, ADHESION PROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR T.LOTANGCHANINTRA,K.WANGKANONT REVDAT 1 15-OCT-25 9JW7 0 JRNL AUTH L.LOTANGCHANINTRA,K.WANGKANONT JRNL TITL PILIN PILA FROM BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0800 - 2.9000 1.00 2694 163 0.1703 0.1794 REMARK 3 2 2.9000 - 2.3000 1.00 2668 135 0.2175 0.2643 REMARK 3 3 2.3000 - 2.0100 1.00 2669 149 0.2333 0.2469 REMARK 3 4 2.0100 - 1.8300 1.00 2652 138 0.2537 0.2948 REMARK 3 5 1.8300 - 1.7000 1.00 2595 176 0.2410 0.2597 REMARK 3 6 1.7000 - 1.6000 1.00 2649 145 0.2674 0.3073 REMARK 3 7 1.6000 - 1.5200 1.00 2630 139 0.2575 0.2783 REMARK 3 8 1.5200 - 1.4500 0.99 2611 136 0.2998 0.3427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1073 REMARK 3 ANGLE : 0.946 1477 REMARK 3 CHIRALITY : 0.073 173 REMARK 3 PLANARITY : 0.008 203 REMARK 3 DIHEDRAL : 13.036 379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 15.1784 2.1780 5.2753 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.0965 REMARK 3 T33: 0.1272 T12: 0.0049 REMARK 3 T13: -0.0164 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.2868 L22: 2.6757 REMARK 3 L33: 6.2349 L12: 1.3844 REMARK 3 L13: 2.7201 L23: 3.4670 REMARK 3 S TENSOR REMARK 3 S11: 0.2715 S12: -0.0486 S13: -0.3492 REMARK 3 S21: 0.1399 S22: 0.1178 S23: -0.3468 REMARK 3 S31: 0.2674 S32: -0.0519 S33: -0.1549 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 25% PEG 4,000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.49250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.49750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 108 36.45 -97.51 REMARK 500 THR A 110 71.53 51.76 REMARK 500 PRO A 144 0.59 -61.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 9JW7 A 23 167 UNP Q6J5K8 Q6J5K8_BURPE 63 207 SEQADV 9JW7 GLY A 21 UNP Q6J5K8 EXPRESSION TAG SEQADV 9JW7 SER A 22 UNP Q6J5K8 EXPRESSION TAG SEQRES 1 A 147 GLY SER ALA TYR GLN ASP TYR LEU ALA ARG SER ARG VAL SEQRES 2 A 147 GLY GLU GLY LEU ALA LEU ALA ALA SER ALA ARG LEU ALA SEQRES 3 A 147 VAL ALA GLU ASN ALA ALA SER GLY ASN GLY PHE SER GLY SEQRES 4 A 147 GLY TYR VAL SER PRO PRO ALA THR ARG ASN VAL ASP SER SEQRES 5 A 147 ILE ARG VAL ASP ASP ASP SER GLY GLN ILE VAL VAL ALA SEQRES 6 A 147 PHE THR THR ARG VAL ALA ALA ALA GLY ALA ASN THR LEU SEQRES 7 A 147 VAL LEU VAL PRO SER ALA PRO ASP GLN ALA ASP THR PRO SEQRES 8 A 147 THR ALA ARG VAL ALA LEU SER LYS GLY ALA VAL GLN ALA SEQRES 9 A 147 GLY ALA ILE THR TRP GLU CYS PHE ALA ASP GLY LYS ALA SEQRES 10 A 147 SER SER SER LEU PRO ALA PRO GLY ALA GLY PRO LEU PRO SEQRES 11 A 147 THR ASP ALA PRO THR LEU ALA GLY LYS LEU ALA PRO PRO SEQRES 12 A 147 GLU CYS ARG ALA FORMUL 2 HOH *158(H2 O) HELIX 1 AA1 SER A 22 ALA A 40 1 19 HELIX 2 AA2 ALA A 40 GLY A 54 1 15 HELIX 3 AA3 ALA A 157 ALA A 161 5 5 HELIX 4 AA4 PRO A 162 ARG A 166 5 5 SHEET 1 AA1 4 VAL A 70 VAL A 75 0 SHEET 2 AA1 4 ILE A 82 PHE A 86 -1 O ALA A 85 N ASP A 71 SHEET 3 AA1 4 THR A 97 PRO A 105 -1 O LEU A 98 N VAL A 84 SHEET 4 AA1 4 ARG A 114 ALA A 116 -1 O VAL A 115 N ALA A 104 SHEET 1 AA2 4 VAL A 70 VAL A 75 0 SHEET 2 AA2 4 ILE A 82 PHE A 86 -1 O ALA A 85 N ASP A 71 SHEET 3 AA2 4 THR A 97 PRO A 105 -1 O LEU A 98 N VAL A 84 SHEET 4 AA2 4 THR A 128 PHE A 132 -1 O GLU A 130 N VAL A 101 SSBOND 1 CYS A 131 CYS A 165 1555 1555 2.10 CISPEP 1 ALA A 143 PRO A 144 0 2.41 CRYST1 50.560 50.560 49.990 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020004 0.00000 CONECT 803 1033 CONECT 1033 803 MASTER 229 0 0 4 8 0 0 6 1181 1 2 12 END