data_9K8O # _entry.id 9K8O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9K8O pdb_00009k8o 10.2210/pdb9k8o/pdb WWPDB D_1300052912 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-10-29 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9K8O _pdbx_database_status.recvd_initial_deposition_date 2024-10-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'NMR solution structure' _pdbx_database_related.db_id 9K8N _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email k-yamasaki@aist.go.jp _pdbx_contact_author.name_first Kazuhiko _pdbx_contact_author.name_last Yamasaki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0320-9697 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yamasaki, K.' 1 ? 'Yamasaki, T.' 2 ? 'Kubota, T.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A minimal Zn2+-dependent RNA-cleaving DNAzyme and its B-DNA-like crystal and solution structures' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamasaki, K.' 1 ? primary 'Inomata, R.' 2 ? primary 'Yamasaki, T.' 3 ? primary 'Kubota, T.' 4 ? primary 'Miyashita, N.' 5 ? primary 'Takeuchi, K.' 6 ? primary 'Miyagishi, M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNAzyme minGAA, catalytic strand' 2989.970 4 ? ? ? ? 2 polymer syn 'substrate strand for DNAzyme minGAA' 3485.272 4 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 4 water nat water 18.015 23 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DC)(DA)(DC)(DC)(DC)(DG)(DC)' GATCACCCGC A,C,E,G ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no yes '(DG)(DC)(DG)(OMG)AA(DG)(DG)(DA)(DT)(DC)' GCGGAAGGATC B,D,F,H ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DT n 1 4 DC n 1 5 DA n 1 6 DC n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 OMG n 2 5 A n 2 6 A n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'synthetic construct' ? 32630 ? 2 1 sample 1 11 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 2 2 DG DG A . n A 1 2 DA 2 3 3 DA DA A . n A 1 3 DT 3 4 4 DT DT A . n A 1 4 DC 4 5 5 DC DC A . n A 1 5 DA 5 6 6 DA DA A . n A 1 6 DC 6 7 7 DC DC A . n A 1 7 DC 7 8 8 DC DC A . n A 1 8 DC 8 9 9 DC DC A . n A 1 9 DG 9 10 10 DG DG A . n A 1 10 DC 10 11 11 DC DC A . n B 2 1 DG 1 15 15 DG DG B . n B 2 2 DC 2 16 16 DC DC B . n B 2 3 DG 3 17 17 DG DG B . n B 2 4 OMG 4 18 18 OMG OMG B . n B 2 5 A 5 19 19 A A B . n B 2 6 A 6 20 20 A A B . n B 2 7 DG 7 21 21 DG DG B . n B 2 8 DG 8 22 22 DG DG B . n B 2 9 DA 9 23 23 DA DA B . n B 2 10 DT 10 24 24 DT DT B . n B 2 11 DC 11 25 25 DC DC B . n C 1 1 DG 1 2 2 DG DG C . n C 1 2 DA 2 3 3 DA DA C . n C 1 3 DT 3 4 4 DT DT C . n C 1 4 DC 4 5 5 DC DC C . n C 1 5 DA 5 6 6 DA DA C . n C 1 6 DC 6 7 7 DC DC C . n C 1 7 DC 7 8 8 DC DC C . n C 1 8 DC 8 9 9 DC DC C . n C 1 9 DG 9 10 10 DG DG C . n C 1 10 DC 10 11 11 DC DC C . n D 2 1 DG 1 15 15 DG DG D . n D 2 2 DC 2 16 16 DC DC D . n D 2 3 DG 3 17 17 DG DG D . n D 2 4 OMG 4 18 18 OMG OMG D . n D 2 5 A 5 19 19 A A D . n D 2 6 A 6 20 ? ? ? D . n D 2 7 DG 7 21 21 DG DG D . n D 2 8 DG 8 22 22 DG DG D . n D 2 9 DA 9 23 23 DA DA D . n D 2 10 DT 10 24 24 DT DT D . n D 2 11 DC 11 25 25 DC DC D . n E 1 1 DG 1 2 2 DG DG E . n E 1 2 DA 2 3 3 DA DA E . n E 1 3 DT 3 4 4 DT DT E . n E 1 4 DC 4 5 5 DC DC E . n E 1 5 DA 5 6 6 DA DA E . n E 1 6 DC 6 7 7 DC DC E . n E 1 7 DC 7 8 8 DC DC E . n E 1 8 DC 8 9 9 DC DC E . n E 1 9 DG 9 10 10 DG DG E . n E 1 10 DC 10 11 11 DC DC E . n F 2 1 DG 1 15 15 DG DG F . n F 2 2 DC 2 16 16 DC DC F . n F 2 3 DG 3 17 17 DG DG F . n F 2 4 OMG 4 18 18 OMG OMG F . n F 2 5 A 5 19 19 A A F . n F 2 6 A 6 20 20 A A F . n F 2 7 DG 7 21 21 DG DG F . n F 2 8 DG 8 22 22 DG DG F . n F 2 9 DA 9 23 23 DA DA F . n F 2 10 DT 10 24 24 DT DT F . n F 2 11 DC 11 25 25 DC DC F . n G 1 1 DG 1 2 2 DG DG G . n G 1 2 DA 2 3 3 DA DA G . n G 1 3 DT 3 4 4 DT DT G . n G 1 4 DC 4 5 5 DC DC G . n G 1 5 DA 5 6 6 DA DA G . n G 1 6 DC 6 7 7 DC DC G . n G 1 7 DC 7 8 8 DC DC G . n G 1 8 DC 8 9 9 DC DC G . n G 1 9 DG 9 10 10 DG DG G . n G 1 10 DC 10 11 11 DC DC G . n H 2 1 DG 1 15 15 DG DG H . n H 2 2 DC 2 16 16 DC DC H . n H 2 3 DG 3 17 17 DG DG H . n H 2 4 OMG 4 18 18 OMG OMG H . n H 2 5 A 5 19 19 A A H . n H 2 6 A 6 20 20 A A H . n H 2 7 DG 7 21 21 DG DG H . n H 2 8 DG 8 22 22 DG DG H . n H 2 9 DA 9 23 23 DA DA H . n H 2 10 DT 10 24 24 DT DT H . n H 2 11 DC 11 25 25 DC DC H . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ZN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ZN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN 1 101 101 ZN ZN B . J 3 ZN 1 101 101 ZN ZN D . K 3 ZN 1 101 101 ZN ZN F . L 4 HOH 1 101 13 HOH HOH A . M 4 HOH 1 101 21 HOH HOH C . M 4 HOH 2 102 4 HOH HOH C . M 4 HOH 3 103 12 HOH HOH C . M 4 HOH 4 104 11 HOH HOH C . M 4 HOH 5 105 19 HOH HOH C . N 4 HOH 1 201 15 HOH HOH D . N 4 HOH 2 202 3 HOH HOH D . N 4 HOH 3 203 14 HOH HOH D . N 4 HOH 4 204 1 HOH HOH D . O 4 HOH 1 101 7 HOH HOH E . P 4 HOH 1 201 8 HOH HOH F . P 4 HOH 2 202 17 HOH HOH F . Q 4 HOH 1 101 10 HOH HOH G . Q 4 HOH 2 102 5 HOH HOH G . Q 4 HOH 3 103 9 HOH HOH G . Q 4 HOH 4 104 16 HOH HOH G . Q 4 HOH 5 105 18 HOH HOH G . Q 4 HOH 6 106 2 HOH HOH G . R 4 HOH 1 101 20 HOH HOH H . R 4 HOH 2 102 22 HOH HOH H . R 4 HOH 3 103 6 HOH HOH H . R 4 HOH 4 104 23 HOH HOH H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DC 7 ? N1 ? C DC 6 N1 2 1 Y 1 C DC 7 ? C2 ? C DC 6 C2 3 1 Y 1 C DC 7 ? O2 ? C DC 6 O2 4 1 Y 1 C DC 7 ? N3 ? C DC 6 N3 5 1 Y 1 C DC 7 ? C4 ? C DC 6 C4 6 1 Y 1 C DC 7 ? N4 ? C DC 6 N4 7 1 Y 1 C DC 7 ? C5 ? C DC 6 C5 8 1 Y 1 C DC 7 ? C6 ? C DC 6 C6 9 1 Y 1 D A 19 ? N9 ? D A 5 N9 10 1 Y 1 D A 19 ? C8 ? D A 5 C8 11 1 Y 1 D A 19 ? N7 ? D A 5 N7 12 1 Y 1 D A 19 ? C5 ? D A 5 C5 13 1 Y 1 D A 19 ? C6 ? D A 5 C6 14 1 Y 1 D A 19 ? N6 ? D A 5 N6 15 1 Y 1 D A 19 ? N1 ? D A 5 N1 16 1 Y 1 D A 19 ? C2 ? D A 5 C2 17 1 Y 1 D A 19 ? N3 ? D A 5 N3 18 1 Y 1 D A 19 ? C4 ? D A 5 C4 19 1 Y 1 H A 19 ? "C4'" ? H A 5 "C4'" 20 1 Y 1 H A 19 ? "O4'" ? H A 5 "O4'" 21 1 Y 1 H A 19 ? "C3'" ? H A 5 "C3'" 22 1 Y 1 H A 19 ? "O3'" ? H A 5 "O3'" 23 1 Y 1 H A 19 ? "C2'" ? H A 5 "C2'" 24 1 Y 1 H A 19 ? "O2'" ? H A 5 "O2'" 25 1 Y 1 H A 19 ? "C1'" ? H A 5 "C1'" 26 1 Y 1 H A 19 ? N9 ? H A 5 N9 27 1 Y 1 H A 19 ? C8 ? H A 5 C8 28 1 Y 1 H A 19 ? N7 ? H A 5 N7 29 1 Y 1 H A 19 ? C5 ? H A 5 C5 30 1 Y 1 H A 19 ? C6 ? H A 5 C6 31 1 Y 1 H A 19 ? N6 ? H A 5 N6 32 1 Y 1 H A 19 ? N1 ? H A 5 N1 33 1 Y 1 H A 19 ? C2 ? H A 5 C2 34 1 Y 1 H A 19 ? N3 ? H A 5 N3 35 1 Y 1 H A 19 ? C4 ? H A 5 C4 36 1 Y 1 H A 20 ? P ? H A 6 P 37 1 Y 1 H A 20 ? OP1 ? H A 6 OP1 38 1 Y 1 H A 20 ? OP2 ? H A 6 OP2 39 1 Y 1 H A 20 ? "O5'" ? H A 6 "O5'" 40 1 Y 1 H A 20 ? "C5'" ? H A 6 "C5'" # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9K8O _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.861 _cell.length_a_esd ? _cell.length_b 81.881 _cell.length_b_esd ? _cell.length_c 81.776 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9K8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9K8O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '35% MPD, 40 mM sodium cacodylate (7.0), 12 mM spermine, 80 mM NaCl, 12 mM KCl, 1 mM ZnCl2, and 20 mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-26 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.08 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-1A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9K8O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.04 _reflns.d_resolution_low 40.94 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5372 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.29 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.04 _reflns_shell.d_res_low 3.22 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1525 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.933 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.22 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.47 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.26 _refine.B_iso_max ? _refine.B_iso_mean 98.974 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9K8O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.04 _refine.ls_d_res_low 40.94 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5105 _refine.ls_number_reflns_R_free 267 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.44 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20995 _refine.ls_R_factor_R_free 0.29728 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20544 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.529 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 28.366 _refine.overall_SU_ML 0.509 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 3.04 _refine_hist.d_res_low 40.94 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1684 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1658 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.011 1855 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 907 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.330 1.178 2846 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.549 2.973 2143 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.101 0.200 253 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.020 990 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 448 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 9.690 10.403 1855 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 9.689 10.404 1854 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 14.497 15.596 2846 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 19.656 95.565 2717 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 19.658 95.543 2717 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.04 _refine_ls_shell.d_res_low 3.116 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.number_reflns_R_work 336 _refine_ls_shell.percent_reflns_obs 93.39 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.382 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.correlation_coeff_Fo_to_Fc ? _refine_ls_shell.correlation_coeff_Fo_to_Fc_free ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.432 # _struct.entry_id 9K8O _struct.title 'Crystal structure of a short zinc-dependent DNAzyme minGAA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9K8O _struct_keywords.text 'DNAzyme, RNA cleavage, Zinc-dependent, DNA-RNA HYBRID' _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9K8O 9K8O ? 1 ? 1 2 PDB 9K8O 9K8O ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9K8O A 1 ? 10 ? 9K8O 2 ? 11 ? 2 11 2 2 9K8O B 1 ? 11 ? 9K8O 15 ? 25 ? 15 25 3 1 9K8O C 1 ? 10 ? 9K8O 2 ? 11 ? 2 11 4 2 9K8O D 1 ? 11 ? 9K8O 15 ? 25 ? 15 25 5 1 9K8O E 1 ? 10 ? 9K8O 2 ? 11 ? 2 11 6 2 9K8O F 1 ? 11 ? 9K8O 15 ? 25 ? 15 25 7 1 9K8O G 1 ? 10 ? 9K8O 2 ? 11 ? 2 11 8 2 9K8O H 1 ? 11 ? 9K8O 15 ? 25 ? 15 25 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly PISA dimeric 2 2 author_defined_assembly PISA dimeric 2 3 author_defined_assembly PISA dimeric 2 4 author_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1820 ? 1 MORE -24 ? 1 'SSA (A^2)' 3670 ? 2 'ABSA (A^2)' 1810 ? 2 MORE -31 ? 2 'SSA (A^2)' 3460 ? 3 'ABSA (A^2)' 1860 ? 3 MORE -22 ? 3 'SSA (A^2)' 3680 ? 4 'ABSA (A^2)' 1500 ? 4 MORE -2 ? 4 'SSA (A^2)' 4010 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,L 2 1 C,D,J,M,N 3 1 E,F,K,O,P 4 1 G,H,Q,R # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'native gel electrophoresis' ? 2 2 'native gel electrophoresis' ? 3 3 'native gel electrophoresis' ? 4 4 'native gel electrophoresis' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 3 "O3'" ? ? ? 1_555 B OMG 4 P ? ? B DG 17 B OMG 18 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale2 covale both ? B OMG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B OMG 18 B A 19 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale3 covale both ? D DG 3 "O3'" ? ? ? 1_555 D OMG 4 P ? ? D DG 17 D OMG 18 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale both ? D OMG 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D OMG 18 D A 19 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale both ? F DG 3 "O3'" ? ? ? 1_555 F OMG 4 P ? ? F DG 17 F OMG 18 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale6 covale both ? F OMG 4 "O3'" ? ? ? 1_555 F A 5 P ? ? F OMG 18 F A 19 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale7 covale both ? H DG 3 "O3'" ? ? ? 1_555 H OMG 4 P ? ? H DG 17 H OMG 18 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale8 covale both ? H OMG 4 "O3'" ? ? ? 1_555 H A 5 P ? ? H OMG 18 H A 19 1_555 ? ? ? ? ? ? ? 1.618 ? ? metalc1 metalc ? ? D DG 7 N7 ? ? ? 1_555 J ZN . ZN B ? D DG 21 D ZN 101 1_555 ? ? ? ? ? ? ? 2.576 ? ? metalc2 metalc ? ? D DG 8 N7 ? ? ? 1_555 J ZN . ZN A ? D DG 22 D ZN 101 1_555 ? ? ? ? ? ? ? 2.600 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 4 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 4 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DG 7 N1 ? ? A DA 6 B DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DG 7 O6 ? ? A DA 6 B DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B OMG 4 N1 ? ? A DC 8 B OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B OMG 4 O6 ? ? A DC 8 B OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B OMG 4 N2 ? ? A DC 8 B OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 9 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 9 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 9 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 10 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 3 N3 ? ? ? 1_555 B A 5 N6 ? ? B DG 17 B A 19 1_555 ? ? ? ? ? ? 'DG-A MISPAIR' ? ? ? hydrog26 hydrog ? ? B OMG 4 N3 ? ? ? 1_555 B A 6 N6 ? ? B OMG 18 B A 20 1_555 ? ? ? ? ? ? 'OMG-A MISPAIR' ? ? ? hydrog27 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 3 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 3 D DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 4 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 4 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 5 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 5 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 5 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DG 7 N1 ? ? C DA 6 D DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog38 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DG 7 O6 ? ? C DA 6 D DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D OMG 4 N1 ? ? C DC 8 D OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D OMG 4 O6 ? ? C DC 8 D OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D OMG 4 N2 ? ? C DC 8 D OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 9 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 9 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 9 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 10 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 10 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 10 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 11 D DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DG 1 N1 ? ? ? 1_555 F DC 11 N3 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DG 1 N2 ? ? ? 1_555 F DC 11 O2 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DG 1 O6 ? ? ? 1_555 F DC 11 N4 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DA 2 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 3 F DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DA 2 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 3 F DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 9 N1 ? ? E DT 4 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 9 N6 ? ? E DT 4 F DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DC 4 N3 ? ? ? 1_555 F DG 8 N1 ? ? E DC 5 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DC 4 N4 ? ? ? 1_555 F DG 8 O6 ? ? E DC 5 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DC 4 O2 ? ? ? 1_555 F DG 8 N2 ? ? E DC 5 F DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DG 7 N1 ? ? E DA 6 F DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog62 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DG 7 O6 ? ? E DA 6 F DG 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog63 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F OMG 4 N1 ? ? E DC 8 F OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F OMG 4 O6 ? ? E DC 8 F OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F OMG 4 N2 ? ? E DC 8 F OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 3 N1 ? ? E DC 9 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 3 O6 ? ? E DC 9 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 3 N2 ? ? E DC 9 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DG 9 N1 ? ? ? 1_555 F DC 2 N3 ? ? E DG 10 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DG 9 N2 ? ? ? 1_555 F DC 2 O2 ? ? E DG 10 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DG 9 O6 ? ? ? 1_555 F DC 2 N4 ? ? E DG 10 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 1 N1 ? ? E DC 11 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 1 O6 ? ? E DC 11 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 1 N2 ? ? E DC 11 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? F DG 3 N2 ? ? ? 1_555 F A 5 N1 ? ? F DG 17 F A 19 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog76 hydrog ? ? F DG 3 N3 ? ? ? 1_555 F A 5 N6 ? ? F DG 17 F A 19 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog77 hydrog ? ? F OMG 4 N3 ? ? ? 1_555 F A 6 N6 ? ? F OMG 18 F A 20 1_555 ? ? ? ? ? ? 'OMG-A MISPAIR' ? ? ? hydrog78 hydrog ? ? G DG 1 N1 ? ? ? 1_555 H DC 11 N3 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? G DG 1 N2 ? ? ? 1_555 H DC 11 O2 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? G DG 1 O6 ? ? ? 1_555 H DC 11 N4 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? G DA 2 N1 ? ? ? 1_555 H DT 10 N3 ? ? G DA 3 H DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? G DA 2 N6 ? ? ? 1_555 H DT 10 O4 ? ? G DA 3 H DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? G DT 3 N3 ? ? ? 1_555 H DA 9 N1 ? ? G DT 4 H DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? G DT 3 O4 ? ? ? 1_555 H DA 9 N6 ? ? G DT 4 H DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? G DC 4 N3 ? ? ? 1_555 H DG 8 N1 ? ? G DC 5 H DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? G DC 4 N4 ? ? ? 1_555 H DG 8 O6 ? ? G DC 5 H DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? G DC 4 O2 ? ? ? 1_555 H DG 8 N2 ? ? G DC 5 H DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? G DC 6 N3 ? ? ? 1_555 H DG 7 N1 ? ? G DC 7 H DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? G DC 6 N4 ? ? ? 1_555 H DG 7 O6 ? ? G DC 7 H DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? G DC 6 O2 ? ? ? 1_555 H DG 7 N2 ? ? G DC 7 H DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? G DC 7 N3 ? ? ? 1_555 H OMG 4 N1 ? ? G DC 8 H OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? G DC 7 N4 ? ? ? 1_555 H OMG 4 O6 ? ? G DC 8 H OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? G DC 7 O2 ? ? ? 1_555 H OMG 4 N2 ? ? G DC 8 H OMG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G DC 8 N3 ? ? ? 1_555 H DG 3 N1 ? ? G DC 9 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G DC 8 N4 ? ? ? 1_555 H DG 3 O6 ? ? G DC 9 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? G DC 8 O2 ? ? ? 1_555 H DG 3 N2 ? ? G DC 9 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? G DG 9 N1 ? ? ? 1_555 H DC 2 N3 ? ? G DG 10 H DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? G DG 9 N2 ? ? ? 1_555 H DC 2 O2 ? ? G DG 10 H DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G DG 9 O6 ? ? ? 1_555 H DC 2 N4 ? ? G DG 10 H DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G DC 10 N3 ? ? ? 1_555 H DG 1 N1 ? ? G DC 11 H DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G DC 10 N4 ? ? ? 1_555 H DG 1 O6 ? ? G DC 11 H DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G DC 10 O2 ? ? ? 1_555 H DG 1 N2 ? ? G DC 11 H DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9K8O _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id D _pdbx_unobs_or_zero_occ_residues.auth_comp_id A _pdbx_unobs_or_zero_occ_residues.auth_seq_id 20 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id D _pdbx_unobs_or_zero_occ_residues.label_comp_id A _pdbx_unobs_or_zero_occ_residues.label_seq_id 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 OMG P P N N 184 OMG OP1 O N N 185 OMG OP2 O N N 186 OMG OP3 O N N 187 OMG "O5'" O N N 188 OMG "C5'" C N N 189 OMG "C4'" C N R 190 OMG "O4'" O N N 191 OMG "C3'" C N R 192 OMG "O3'" O N N 193 OMG "C2'" C N R 194 OMG "O2'" O N N 195 OMG CM2 C N N 196 OMG "C1'" C N R 197 OMG N9 N Y N 198 OMG C8 C Y N 199 OMG N7 N Y N 200 OMG C5 C Y N 201 OMG C6 C N N 202 OMG O6 O N N 203 OMG N1 N N N 204 OMG C2 C N N 205 OMG N2 N N N 206 OMG N3 N N N 207 OMG C4 C Y N 208 OMG HOP2 H N N 209 OMG HOP3 H N N 210 OMG "H5'" H N N 211 OMG "H5''" H N N 212 OMG "H4'" H N N 213 OMG "H3'" H N N 214 OMG "HO3'" H N N 215 OMG "H2'" H N N 216 OMG HM21 H N N 217 OMG HM22 H N N 218 OMG HM23 H N N 219 OMG "H1'" H N N 220 OMG H8 H N N 221 OMG HN1 H N N 222 OMG HN21 H N N 223 OMG HN22 H N N 224 ZN ZN ZN N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DC OP3 P sing N N 78 DC OP3 HOP3 sing N N 79 DC P OP1 doub N N 80 DC P OP2 sing N N 81 DC P "O5'" sing N N 82 DC OP2 HOP2 sing N N 83 DC "O5'" "C5'" sing N N 84 DC "C5'" "C4'" sing N N 85 DC "C5'" "H5'" sing N N 86 DC "C5'" "H5''" sing N N 87 DC "C4'" "O4'" sing N N 88 DC "C4'" "C3'" sing N N 89 DC "C4'" "H4'" sing N N 90 DC "O4'" "C1'" sing N N 91 DC "C3'" "O3'" sing N N 92 DC "C3'" "C2'" sing N N 93 DC "C3'" "H3'" sing N N 94 DC "O3'" "HO3'" sing N N 95 DC "C2'" "C1'" sing N N 96 DC "C2'" "H2'" sing N N 97 DC "C2'" "H2''" sing N N 98 DC "C1'" N1 sing N N 99 DC "C1'" "H1'" sing N N 100 DC N1 C2 sing N N 101 DC N1 C6 sing N N 102 DC C2 O2 doub N N 103 DC C2 N3 sing N N 104 DC N3 C4 doub N N 105 DC C4 N4 sing N N 106 DC C4 C5 sing N N 107 DC N4 H41 sing N N 108 DC N4 H42 sing N N 109 DC C5 C6 doub N N 110 DC C5 H5 sing N N 111 DC C6 H6 sing N N 112 DG OP3 P sing N N 113 DG OP3 HOP3 sing N N 114 DG P OP1 doub N N 115 DG P OP2 sing N N 116 DG P "O5'" sing N N 117 DG OP2 HOP2 sing N N 118 DG "O5'" "C5'" sing N N 119 DG "C5'" "C4'" sing N N 120 DG "C5'" "H5'" sing N N 121 DG "C5'" "H5''" sing N N 122 DG "C4'" "O4'" sing N N 123 DG "C4'" "C3'" sing N N 124 DG "C4'" "H4'" sing N N 125 DG "O4'" "C1'" sing N N 126 DG "C3'" "O3'" sing N N 127 DG "C3'" "C2'" sing N N 128 DG "C3'" "H3'" sing N N 129 DG "O3'" "HO3'" sing N N 130 DG "C2'" "C1'" sing N N 131 DG "C2'" "H2'" sing N N 132 DG "C2'" "H2''" sing N N 133 DG "C1'" N9 sing N N 134 DG "C1'" "H1'" sing N N 135 DG N9 C8 sing Y N 136 DG N9 C4 sing Y N 137 DG C8 N7 doub Y N 138 DG C8 H8 sing N N 139 DG N7 C5 sing Y N 140 DG C5 C6 sing N N 141 DG C5 C4 doub Y N 142 DG C6 O6 doub N N 143 DG C6 N1 sing N N 144 DG N1 C2 sing N N 145 DG N1 H1 sing N N 146 DG C2 N2 sing N N 147 DG C2 N3 doub N N 148 DG N2 H21 sing N N 149 DG N2 H22 sing N N 150 DG N3 C4 sing N N 151 DT OP3 P sing N N 152 DT OP3 HOP3 sing N N 153 DT P OP1 doub N N 154 DT P OP2 sing N N 155 DT P "O5'" sing N N 156 DT OP2 HOP2 sing N N 157 DT "O5'" "C5'" sing N N 158 DT "C5'" "C4'" sing N N 159 DT "C5'" "H5'" sing N N 160 DT "C5'" "H5''" sing N N 161 DT "C4'" "O4'" sing N N 162 DT "C4'" "C3'" sing N N 163 DT "C4'" "H4'" sing N N 164 DT "O4'" "C1'" sing N N 165 DT "C3'" "O3'" sing N N 166 DT "C3'" "C2'" sing N N 167 DT "C3'" "H3'" sing N N 168 DT "O3'" "HO3'" sing N N 169 DT "C2'" "C1'" sing N N 170 DT "C2'" "H2'" sing N N 171 DT "C2'" "H2''" sing N N 172 DT "C1'" N1 sing N N 173 DT "C1'" "H1'" sing N N 174 DT N1 C2 sing N N 175 DT N1 C6 sing N N 176 DT C2 O2 doub N N 177 DT C2 N3 sing N N 178 DT N3 C4 sing N N 179 DT N3 H3 sing N N 180 DT C4 O4 doub N N 181 DT C4 C5 sing N N 182 DT C5 C7 sing N N 183 DT C5 C6 doub N N 184 DT C7 H71 sing N N 185 DT C7 H72 sing N N 186 DT C7 H73 sing N N 187 DT C6 H6 sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 OMG P OP1 doub N N 191 OMG P OP2 sing N N 192 OMG P OP3 sing N N 193 OMG P "O5'" sing N N 194 OMG OP2 HOP2 sing N N 195 OMG OP3 HOP3 sing N N 196 OMG "O5'" "C5'" sing N N 197 OMG "C5'" "C4'" sing N N 198 OMG "C5'" "H5'" sing N N 199 OMG "C5'" "H5''" sing N N 200 OMG "C4'" "O4'" sing N N 201 OMG "C4'" "C3'" sing N N 202 OMG "C4'" "H4'" sing N N 203 OMG "O4'" "C1'" sing N N 204 OMG "C3'" "O3'" sing N N 205 OMG "C3'" "C2'" sing N N 206 OMG "C3'" "H3'" sing N N 207 OMG "O3'" "HO3'" sing N N 208 OMG "C2'" "O2'" sing N N 209 OMG "C2'" "C1'" sing N N 210 OMG "C2'" "H2'" sing N N 211 OMG "O2'" CM2 sing N N 212 OMG CM2 HM21 sing N N 213 OMG CM2 HM22 sing N N 214 OMG CM2 HM23 sing N N 215 OMG "C1'" N9 sing N N 216 OMG "C1'" "H1'" sing N N 217 OMG N9 C8 sing Y N 218 OMG N9 C4 sing Y N 219 OMG C8 N7 doub Y N 220 OMG C8 H8 sing N N 221 OMG N7 C5 sing Y N 222 OMG C5 C6 sing N N 223 OMG C5 C4 doub Y N 224 OMG C6 O6 doub N N 225 OMG C6 N1 sing N N 226 OMG N1 C2 sing N N 227 OMG N1 HN1 sing N N 228 OMG C2 N2 sing N N 229 OMG C2 N3 doub N N 230 OMG N2 HN21 sing N N 231 OMG N2 HN22 sing N N 232 OMG N3 C4 sing N N 233 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9K8O 'double helix' 9K8O 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 11 1_555 -0.128 -0.220 0.272 -1.482 -0.119 -10.453 1 A_DG2:DC25_B A 2 ? B 25 ? 19 1 1 A DA 2 1_555 B DT 10 1_555 0.579 -0.003 -0.297 -6.278 -0.139 -9.088 2 A_DA3:DT24_B A 3 ? B 24 ? 20 1 1 A DT 3 1_555 B DA 9 1_555 -0.188 -0.245 -0.255 0.356 -6.217 -0.442 3 A_DT4:DA23_B A 4 ? B 23 ? 20 1 1 A DC 4 1_555 B DG 8 1_555 -0.284 -0.242 -0.321 11.551 -1.918 -6.166 4 A_DC5:DG22_B A 5 ? B 22 ? 19 1 1 A DA 5 1_555 B DG 7 1_555 -0.043 1.796 -0.278 24.997 -20.648 -17.403 5 A_DA6:DG21_B A 6 ? B 21 ? 8 1 1 A DC 7 1_555 B OMG 4 1_555 -0.545 0.084 -0.301 0.741 -9.441 -6.174 6 A_DC8:OMG18_B A 8 ? B 18 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 -0.992 0.185 0.429 -15.914 -2.186 -6.805 7 A_DC9:DG17_B A 9 ? B 17 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 0.158 0.246 -0.447 -3.082 -1.621 -1.432 8 A_DG10:DC16_B A 10 ? B 16 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.166 0.031 -0.228 -2.957 -0.451 7.004 9 A_DC11:DG15_B A 11 ? B 15 ? 19 1 1 C DG 1 1_555 D DC 11 1_555 -0.398 -0.322 -0.236 -2.416 -3.063 -1.315 10 C_DG2:DC25_D C 2 ? D 25 ? 19 1 1 C DA 2 1_555 D DT 10 1_555 1.154 -0.105 0.167 4.191 0.693 -8.087 11 C_DA3:DT24_D C 3 ? D 24 ? 20 1 1 C DT 3 1_555 D DA 9 1_555 0.138 -0.130 0.203 18.588 3.726 4.335 12 C_DT4:DA23_D C 4 ? D 23 ? 20 1 1 C DC 4 1_555 D DG 8 1_555 0.661 -0.535 0.257 27.847 -23.376 -4.043 13 C_DC5:DG22_D C 5 ? D 22 ? 19 1 1 C DA 5 1_555 D DG 7 1_555 -0.510 1.493 -0.056 2.815 -31.739 -19.321 14 C_DA6:DG21_D C 6 ? D 21 ? 8 1 1 C DC 7 1_555 D OMG 4 1_555 0.716 0.123 0.402 -15.516 -14.975 -0.963 15 C_DC8:OMG18_D C 8 ? D 18 ? 19 1 1 C DC 8 1_555 D DG 3 1_555 -0.511 -0.073 0.797 -19.011 0.112 -4.332 16 C_DC9:DG17_D C 9 ? D 17 ? 19 1 1 C DG 9 1_555 D DC 2 1_555 -1.146 -0.075 -0.102 0.573 -1.853 15.105 17 C_DG10:DC16_D C 10 ? D 16 ? 19 1 1 C DC 10 1_555 D DG 1 1_555 0.415 -0.567 -0.255 2.988 -0.197 -0.540 18 C_DC11:DG15_D C 11 ? D 15 ? 19 1 1 F DG 1 1_555 E DC 10 1_555 0.104 -0.017 -0.380 -1.638 -0.321 -1.357 19 F_DG15:DC11_E F 15 ? E 11 ? 19 1 1 F DC 2 1_555 E DG 9 1_555 -0.261 0.209 0.239 -6.096 -0.554 -6.375 20 F_DC16:DG10_E F 16 ? E 10 ? 19 1 1 F DG 3 1_555 E DC 8 1_555 0.317 -0.090 0.411 13.760 -3.063 -5.745 21 F_DG17:DC9_E F 17 ? E 9 ? 19 1 1 F OMG 4 1_555 E DC 7 1_555 0.362 0.039 -0.207 1.225 -6.980 -9.892 22 F_OMG18:DC8_E F 18 ? E 8 ? 19 1 1 F DG 7 1_555 E DA 5 1_555 -0.531 1.707 -0.251 -23.995 -22.484 -21.408 23 F_DG21:DA6_E F 21 ? E 6 ? 8 1 1 F DG 8 1_555 E DC 4 1_555 -0.338 -0.383 -0.353 -14.157 -7.143 -5.561 24 F_DG22:DC5_E F 22 ? E 5 ? 19 1 1 F DA 9 1_555 E DT 3 1_555 -0.002 -0.327 -0.343 0.101 -7.879 -1.180 25 F_DA23:DT4_E F 23 ? E 4 ? 20 1 1 F DT 10 1_555 E DA 2 1_555 0.307 -0.089 0.117 3.234 -2.022 -4.795 26 F_DT24:DA3_E F 24 ? E 3 ? 20 1 1 F DC 11 1_555 E DG 1 1_555 0.178 -0.183 0.204 2.483 -5.022 -6.722 27 F_DC25:DG2_E F 25 ? E 2 ? 19 1 1 G DG 1 1_555 H DC 11 1_555 -0.347 -0.242 -0.004 5.367 -11.241 -4.911 28 G_DG2:DC25_H G 2 ? H 25 ? 19 1 1 G DA 2 1_555 H DT 10 1_555 0.115 -0.699 1.101 6.255 -10.026 -3.914 29 G_DA3:DT24_H G 3 ? H 24 ? 20 1 1 G DT 3 1_555 H DA 9 1_555 0.529 -0.547 0.755 0.144 -10.319 2.080 30 G_DT4:DA23_H G 4 ? H 23 ? 20 1 1 G DC 4 1_555 H DG 8 1_555 0.343 -0.140 0.554 -1.278 -5.419 1.657 31 G_DC5:DG22_H G 5 ? H 22 ? 19 1 1 G DC 6 1_555 H DG 7 1_555 -0.021 -0.460 1.010 -1.819 -6.509 -6.073 32 G_DC7:DG21_H G 7 ? H 21 ? 19 1 1 G DC 7 1_555 H OMG 4 1_555 -0.295 -0.234 0.469 -10.118 -3.721 -0.864 33 G_DC8:OMG18_H G 8 ? H 18 ? 19 1 1 G DC 8 1_555 H DG 3 1_555 -0.687 -0.164 0.635 -6.085 -8.711 10.752 34 G_DC9:DG17_H G 9 ? H 17 ? 19 1 1 G DG 9 1_555 H DC 2 1_555 0.096 -0.266 0.217 -0.161 -4.873 -3.312 35 G_DG10:DC16_H G 10 ? H 16 ? 19 1 1 G DC 10 1_555 H DG 1 1_555 0.060 -0.185 0.160 -2.943 -10.894 -0.393 36 G_DC11:DG15_H G 11 ? H 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 11 1_555 A DA 2 1_555 B DT 10 1_555 -0.818 -0.351 3.502 2.333 1.017 37.769 -0.679 1.580 3.436 1.570 -3.599 37.852 1 AA_DG2DA3:DT24DC25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DA 2 1_555 B DT 10 1_555 A DT 3 1_555 B DA 9 1_555 0.997 -1.002 3.166 -0.634 3.273 27.448 -2.849 -2.232 3.005 6.865 1.330 27.646 2 AA_DA3DT4:DA23DT24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DT 3 1_555 B DA 9 1_555 A DC 4 1_555 B DG 8 1_555 0.026 -0.266 3.096 1.410 4.485 29.716 -1.376 0.221 3.022 8.677 -2.728 30.077 3 AA_DT4DC5:DG22DA23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DC 4 1_555 B DG 8 1_555 A DA 5 1_555 B DG 7 1_555 0.035 0.107 3.286 2.987 8.193 33.257 -1.114 0.412 3.212 14.017 -5.110 34.350 4 AA_DC5DA6:DG21DG22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DA 5 1_555 B DG 7 1_555 A DC 7 1_555 B OMG 4 1_555 2.482 2.861 3.396 3.706 -18.209 83.423 2.527 -1.752 2.930 -13.536 -2.755 85.097 5 AA_DA6DC8:OMG18DG21_BB A 6 ? B 21 ? A 8 ? B 18 ? 1 A DC 7 1_555 B OMG 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.207 0.926 3.690 -8.274 4.657 39.319 0.738 -0.771 3.738 6.801 12.083 40.405 6 AA_DC8DC9:DG17OMG18_BB A 8 ? B 18 ? A 9 ? B 17 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.454 0.448 3.259 4.891 5.503 32.919 -0.120 1.576 3.192 9.563 -8.499 33.710 7 AA_DC9DG10:DC16DG17_BB A 9 ? B 17 ? A 10 ? B 16 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.779 0.059 3.347 -2.115 -2.598 35.648 0.476 -1.576 3.285 -4.233 3.445 35.800 8 AA_DG10DC11:DG15DC16_BB A 10 ? B 16 ? A 11 ? B 15 ? 1 A DC 10 1_555 B DG 1 1_555 C DG 1 1_555 D DC 11 1_555 -0.341 0.717 3.307 -0.315 6.039 -35.497 -2.013 -0.597 3.144 -9.817 -0.513 -35.992 9 AC_DC11DG2:DC25DG15_DB A 11 ? B 15 ? C 2 ? D 25 ? 1 C DG 1 1_555 D DC 11 1_555 C DA 2 1_555 D DT 10 1_555 -0.973 -0.153 3.206 -3.518 -1.797 42.106 -0.029 0.991 3.277 -2.494 4.883 42.282 10 CC_DG2DA3:DT24DC25_DD C 2 ? D 25 ? C 3 ? D 24 ? 1 C DA 2 1_555 D DT 10 1_555 C DT 3 1_555 D DA 9 1_555 1.127 -1.095 3.079 -1.876 -3.265 26.544 -1.562 -2.891 3.103 -7.065 4.060 26.805 11 CC_DA3DT4:DA23DT24_DD C 3 ? D 24 ? C 4 ? D 23 ? 1 C DT 3 1_555 D DA 9 1_555 C DC 4 1_555 D DG 8 1_555 0.191 -0.159 3.072 2.753 4.443 36.760 -0.808 0.045 3.038 7.002 -4.338 37.117 12 CC_DT4DC5:DG22DA23_DD C 4 ? D 23 ? C 5 ? D 22 ? 1 C DC 4 1_555 D DG 8 1_555 C DA 5 1_555 D DG 7 1_555 -1.052 -0.404 4.035 0.190 -1.801 35.540 -0.337 1.756 4.045 -2.947 -0.311 35.585 13 CC_DC5DA6:DG21DG22_DD C 5 ? D 22 ? C 6 ? D 21 ? 1 C DA 5 1_555 D DG 7 1_555 C DC 7 1_555 D OMG 4 1_555 1.859 1.712 3.706 -1.996 -18.047 78.692 1.838 -1.496 3.279 -14.060 1.555 80.427 14 CC_DA6DC8:OMG18DG21_DD C 6 ? D 21 ? C 8 ? D 18 ? 1 C DC 7 1_555 D OMG 4 1_555 C DC 8 1_555 D DG 3 1_555 -0.685 -0.418 3.373 -7.840 2.811 30.146 -1.338 -0.293 3.388 5.279 14.725 31.249 15 CC_DC8DC9:DG17OMG18_DD C 8 ? D 18 ? C 9 ? D 17 ? 1 C DC 8 1_555 D DG 3 1_555 C DG 9 1_555 D DC 2 1_555 0.044 0.654 2.946 6.683 -0.769 27.648 1.489 1.290 2.859 -1.579 -13.728 28.439 16 CC_DC9DG10:DC16DG17_DD C 9 ? D 17 ? C 10 ? D 16 ? 1 C DG 9 1_555 D DC 2 1_555 C DC 10 1_555 D DG 1 1_555 -0.319 -0.184 3.234 1.473 5.275 43.571 -0.738 0.564 3.179 7.073 -1.975 43.897 17 CC_DG10DC11:DG15DC16_DD C 10 ? D 16 ? C 11 ? D 15 ? 1 C DC 10 1_555 D DG 1 1_555 F DG 1 1_555 E DC 10 1_555 -0.315 0.932 3.482 0.870 4.399 -34.653 -2.249 -0.387 3.349 -7.347 1.452 -34.933 18 CF_DC11DG15:DC11DG15_ED C 11 ? D 15 ? F 15 ? E 11 ? 1 F DG 1 1_555 E DC 10 1_555 F DC 2 1_555 E DG 9 1_555 -0.922 -0.227 3.421 -7.069 -1.694 36.133 -0.112 0.427 3.539 -2.698 11.257 36.833 19 FF_DG15DC16:DG10DC11_EE F 15 ? E 11 ? F 16 ? E 10 ? 1 F DC 2 1_555 E DG 9 1_555 F DG 3 1_555 E DC 8 1_555 0.047 0.196 3.012 -0.637 0.679 29.683 0.251 -0.215 3.014 1.325 1.243 29.697 20 FF_DC16DG17:DC9DG10_EE F 16 ? E 10 ? F 17 ? E 9 ? 1 F DG 3 1_555 E DC 8 1_555 F OMG 4 1_555 E DC 7 1_555 0.235 0.656 3.800 5.409 0.457 39.640 0.898 0.381 3.806 0.670 -7.931 39.995 21 FF_DG17OMG18:DC8DC9_EE F 17 ? E 9 ? F 18 ? E 8 ? 1 F OMG 4 1_555 E DC 7 1_555 F DG 7 1_555 E DA 5 1_555 -2.460 2.729 3.355 -1.653 -18.687 83.946 2.416 1.774 2.855 -13.820 1.222 85.635 22 FF_OMG18DG21:DA6DC8_EE F 18 ? E 8 ? F 21 ? E 6 ? 1 F DG 7 1_555 E DA 5 1_555 F DG 8 1_555 E DC 4 1_555 0.390 -0.005 3.417 -2.270 6.201 29.216 -1.345 -1.243 3.306 12.100 4.429 29.937 23 FF_DG21DG22:DC5DA6_EE F 21 ? E 6 ? F 22 ? E 5 ? 1 F DG 8 1_555 E DC 4 1_555 F DA 9 1_555 E DT 3 1_555 -0.266 -0.007 2.961 -0.549 5.543 35.164 -0.743 0.362 2.929 9.103 0.901 35.589 24 FF_DG22DA23:DT4DC5_EE F 22 ? E 5 ? F 23 ? E 4 ? 1 F DA 9 1_555 E DT 3 1_555 F DT 10 1_555 E DA 2 1_555 -0.239 -1.093 3.275 -2.659 2.190 32.172 -2.346 -0.037 3.205 3.937 4.781 32.351 25 FF_DA23DT24:DA3DT4_EE F 23 ? E 4 ? F 24 ? E 3 ? 1 F DT 10 1_555 E DA 2 1_555 F DC 11 1_555 E DG 1 1_555 0.490 -0.302 3.345 3.555 1.743 32.805 -0.835 -0.243 3.358 3.073 -6.265 33.037 26 FF_DT24DC25:DG2DA3_EE F 24 ? E 3 ? F 25 ? E 2 ? 1 F DC 11 1_555 E DG 1 1_555 G DG 1 1_555 H DC 11 1_555 0.295 1.109 3.494 1.113 -0.417 -34.379 -1.806 0.684 3.496 0.705 1.883 -34.399 27 FG_DC25DG2:DC25DG2_HE F 25 ? E 2 ? G 2 ? H 25 ? 1 G DG 1 1_555 H DC 11 1_555 G DA 2 1_555 H DT 10 1_555 0.252 -0.979 3.098 -8.645 -0.439 33.988 -1.564 -1.641 2.959 -0.736 14.498 35.041 28 GG_DG2DA3:DT24DC25_HH G 2 ? H 25 ? G 3 ? H 24 ? 1 G DA 2 1_555 H DT 10 1_555 G DT 3 1_555 H DA 9 1_555 0.562 -1.136 3.480 5.254 -1.271 32.948 -1.749 -0.033 3.565 -2.222 -9.186 33.377 29 GG_DA3DT4:DA23DT24_HH G 3 ? H 24 ? G 4 ? H 23 ? 1 G DT 3 1_555 H DA 9 1_555 G DC 4 1_555 H DG 8 1_555 0.452 0.014 3.341 6.978 1.513 42.008 -0.138 0.104 3.369 2.092 -9.650 42.584 30 GG_DT4DC5:DG22DA23_HH G 4 ? H 23 ? G 5 ? H 22 ? 1 G DC 4 1_555 H DG 8 1_555 G DC 6 1_555 H DG 7 1_555 0.458 -2.284 3.056 -5.340 1.961 27.254 -5.171 -2.101 2.749 4.104 11.179 27.830 31 GG_DC5DC7:DG21DG22_HH G 5 ? H 22 ? G 7 ? H 21 ? 1 G DC 6 1_555 H DG 7 1_555 G DC 7 1_555 H OMG 4 1_555 -0.485 -1.898 3.314 5.870 -1.991 34.054 -2.880 1.737 3.290 -3.366 -9.921 34.597 32 GG_DC7DC8:OMG18DG21_HH G 7 ? H 21 ? G 8 ? H 18 ? 1 G DC 7 1_555 H OMG 4 1_555 G DC 8 1_555 H DG 3 1_555 0.009 -0.271 3.183 -4.575 0.841 35.188 -0.565 -0.666 3.150 1.384 7.527 35.484 33 GG_DC8DC9:DG17OMG18_HH G 8 ? H 18 ? G 9 ? H 17 ? 1 G DC 8 1_555 H DG 3 1_555 G DG 9 1_555 H DC 2 1_555 -0.589 0.026 3.083 0.099 4.727 36.484 -0.565 0.947 3.060 7.512 -0.158 36.779 34 GG_DC9DG10:DC16DG17_HH G 9 ? H 17 ? G 10 ? H 16 ? 1 G DG 9 1_555 H DC 2 1_555 G DC 10 1_555 H DG 1 1_555 -0.056 -1.164 3.278 -0.931 1.322 32.134 -2.336 -0.065 3.229 2.386 1.681 32.174 35 GG_DG10DC11:DG15DC16_HH G 10 ? H 16 ? G 11 ? H 15 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9K8N _pdbx_initial_refinement_model.details 'NMR solution structure' # _atom_sites.entry_id 9K8O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025733 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012213 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012229 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P ZN # loop_ #