HEADER FLUORESCENT PROTEIN 24-OCT-24 9K8X TITLE CRYSTAL STRUCTURE OF THE CALCIUM INDICATOR GCAMP6S-BRUS-145 IN TITLE 2 CALCIUM-BOUNDED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM INDICATOR GCAMP6S-BRUS-145,CALMODULIN-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: RESIDUES 1 TO 46 (LAT), EXPRESSION TAG RESIDUES 47 TO COMPND 7 49 (MVD), LINKER RESIDUES 50 TO 70 (LSS), FRAGMENT FROM THE PROTEIN COMPND 8 P11799 RESIDUES 71 TO 72 (LE), LINKER RESIDUES 73 TO 162 (LYK), COMPND 9 SYNTHETIC CONSTRUCT EGFP AFA52652.1 RESIDUES 163 TO 168 (GGS), LINKER COMPND 10 RESIDUES 169 TO 311 (EYN), SYNTHETIC CONSTRUCT EGFP AFA52652.1 COMPND 11 RESIDUE 312 (L), LINKER RESIDUES 313 TO 460 (TAK), THE PROTEIN P0DP23 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 32630, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL: XL1-BLUE KEYWDS GENETICALLY ENCODED CALCIUM INDICATOR, CALCIUM BOUNDED STATE, KEYWDS 2 CALCIUM-SENSITIVE FLUORESCENCE LIFETIME, CALCIUM SATURATED, KEYWDS 3 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.A.VARFOLOMEEVA,T.R.SIMONYAN,A.V.MAMONTOVA,V.O.POPOV,A.M.BOGDANOV, AUTHOR 2 K.M.BOYKO REVDAT 3 18-MAR-26 9K8X 1 SEQRES REVDAT 2 01-JAN-25 9K8X 1 JRNL REVDAT 1 11-DEC-24 9K8X 0 JRNL AUTH T.R.SIMONYAN,L.A.VARFOLOMEEVA,A.V.MAMONTOVA,A.A.KOTLOBAY, JRNL AUTH 2 A.Y.GOROKHOVATSKY,A.M.BOGDANOV,K.M.BOYKO JRNL TITL CALCIUM INDICATORS WITH FLUORESCENCE LIFETIME-BASED SIGNAL JRNL TITL 2 READOUT: A STRUCTURE-FUNCTION STUDY. JRNL REF INT J MOL SCI V. 25 2024 JRNL REFN ESSN 1422-0067 JRNL PMID 39684209 JRNL DOI 10.3390/IJMS252312493 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 41351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.173 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3244 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4328 ; 2.603 ; 1.838 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 5.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;10.893 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2443 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 3.572 ; 2.607 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1988 ; 4.896 ; 4.668 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1643 ; 5.243 ; 2.810 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4880 ; 8.535 ;27.020 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 460 REMARK 3 RESIDUE RANGE : A 501 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): -3.913 39.380 1.679 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: 0.0082 REMARK 3 T33: 0.0152 T12: -0.0013 REMARK 3 T13: -0.0018 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.8037 L22: 0.4796 REMARK 3 L33: 1.0654 L12: -0.3201 REMARK 3 L13: 0.2430 L23: -0.0831 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0495 S13: -0.0632 REMARK 3 S21: 0.0431 S22: 0.0145 S23: 0.0341 REMARK 3 S31: 0.0815 S32: -0.0001 S33: -0.0297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9K8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300051426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-S REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 23.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.80 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 1.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM THIOCYANATE, PH 6.9, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.35150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.14650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.14650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.67575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.14650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.14650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.02725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.14650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.14650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.67575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.14650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.14650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.02725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.35150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 MET A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 GLN A 31 REMARK 465 MET A 32 REMARK 465 GLY A 33 REMARK 465 ARG A 34 REMARK 465 ASP A 35 REMARK 465 LEU A 36 REMARK 465 TYR A 37 REMARK 465 ASP A 38 REMARK 465 ASP A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 LYS A 42 REMARK 465 ASP A 43 REMARK 465 LEU A 44 REMARK 465 ALA A 45 REMARK 465 THR A 46 REMARK 465 GLY A 156 REMARK 465 MET A 157 REMARK 465 ASP A 158 REMARK 465 GLU A 159 REMARK 465 LEU A 160 REMARK 465 TYR A 161 REMARK 465 LYS A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 THR A 165 REMARK 465 GLY A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 MET A 169 REMARK 465 ALA A 461 REMARK 465 LYS A 462 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 47 CG SD CE REMARK 470 ARG A 52 CD NE CZ NH1 NH2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 LEU A 314 CG CD1 CD2 REMARK 470 GLN A 317 CG CD OE1 NE2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 ASP A 436 CG OD1 OD2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 97 CG OD1 OD2 REMARK 480 LYS A 138 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 97 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 LEU A 131 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 LYS A 138 CD - CE - NZ ANGL. DEV. = -16.0 DEGREES REMARK 500 CYS A 239 CB - CA - C ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 LEU A 310 CB - CG - CD1 ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 332 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP A 378 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A 430 CB - CG - CD1 ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 317 -115.70 -61.57 REMARK 500 LEU A 318 106.15 80.49 REMARK 500 ASN A 356 60.64 -155.08 REMARK 500 ASP A 432 0.12 -58.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 334 OD1 REMARK 620 2 ASP A 336 OD1 78.6 REMARK 620 3 ASP A 338 OD1 88.0 83.1 REMARK 620 4 THR A 340 O 87.4 160.5 82.9 REMARK 620 5 GLU A 345 OE1 91.4 74.4 157.1 120.0 REMARK 620 6 GLU A 345 OE2 115.1 122.5 147.3 75.8 51.1 REMARK 620 7 HOH A 710 O 158.2 80.2 84.8 111.9 87.5 80.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 370 OD1 REMARK 620 2 ASP A 372 OD1 74.8 REMARK 620 3 ASP A 374 OD1 84.3 81.5 REMARK 620 4 THR A 376 O 89.0 154.8 77.7 REMARK 620 5 ASP A 378 OD2 167.5 92.8 95.7 103.2 REMARK 620 6 GLU A 381 OE1 102.9 122.5 155.9 79.4 82.1 REMARK 620 7 GLU A 381 OE2 90.2 72.6 154.0 127.6 84.4 49.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 407 OD1 REMARK 620 2 ASP A 409 OD1 76.2 REMARK 620 3 ASN A 411 OD1 83.7 70.2 REMARK 620 4 TYR A 413 O 95.4 147.2 77.4 REMARK 620 5 GLU A 418 OE1 98.4 82.4 151.2 130.5 REMARK 620 6 GLU A 418 OE2 112.0 138.7 148.4 74.0 56.7 REMARK 620 7 HOH A 616 O 163.7 88.2 86.7 95.4 83.8 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 ASP A 445 OD1 84.5 REMARK 620 3 ASP A 447 OD1 88.4 82.3 REMARK 620 4 GLN A 449 O 89.0 154.3 72.7 REMARK 620 5 GLU A 454 OE1 107.5 127.0 146.9 78.6 REMARK 620 6 GLU A 454 OE2 84.2 77.5 159.0 126.6 53.9 REMARK 620 7 HOH A 663 O 162.3 78.3 85.3 104.8 86.4 96.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9K8W RELATED DB: PDB REMARK 900 ANOTHER GENETIC ENGINEERED VARIANT OF THE PROTEIN DBREF 9K8X A 1 314 PDB 9K8X 9K8X 1 314 DBREF 9K8X A 315 462 UNP P0DP23 CALM1_HUMAN 2 149 SEQADV 9K8X PRO A 315 UNP P0DP23 ALA 2 ENGINEERED MUTATION SEQADV 9K8X ASP A 374 UNP P0DP23 ASN 61 ENGINEERED MUTATION SEQADV 9K8X TYR A 392 UNP P0DP23 ASP 79 ENGINEERED MUTATION SEQADV 9K8X ARG A 393 UNP P0DP23 THR 80 ENGINEERED MUTATION SEQADV 9K8X THR A 395 UNP P0DP23 SER 82 ENGINEERED MUTATION SEQADV 9K8X GLY A 404 UNP P0DP23 ARG 91 ENGINEERED MUTATION SEQRES 1 A 460 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 460 GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SER MET SEQRES 3 A 460 THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR ASP ASP SEQRES 4 A 460 ASP ASP LYS ASP LEU ALA THR MET VAL ASP SER SER ARG SEQRES 5 A 460 ARG LYS TRP ASN LYS THR GLY HIS ALA VAL ARG ALA ILE SEQRES 6 A 460 GLY ARG LEU SER SER LEU GLU ASN VAL TYR ILE LYS ALA SEQRES 7 A 460 ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN TYR HIS ILE SEQRES 8 A 460 ARG HIS ASN ILE GLU ASP GLY GLY VAL GLN LEU ALA TYR SEQRES 9 A 460 HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL SEQRES 10 A 460 LEU LEU PRO ASP ASN HIS TYR LEU SER VAL GLN SER LYS SEQRES 11 A 460 LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL SEQRES 12 A 460 LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU GLY SEQRES 13 A 460 MET ASP GLU LEU TYR LYS GLY GLY THR GLY GLY SER MET SEQRES 14 A 460 VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 15 A 460 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 16 A 460 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 17 A 460 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 18 A 460 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CR2 SEQRES 19 A 460 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS GLN SEQRES 20 A 460 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR ILE SEQRES 21 A 460 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 22 A 460 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 23 A 460 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 24 A 460 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN LEU SEQRES 25 A 460 PRO ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 26 A 460 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 27 A 460 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 28 A 460 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 29 A 460 ASN GLU VAL ASP ALA ASP GLY ASP GLY THR ILE ASP PHE SEQRES 30 A 460 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS TYR SEQRES 31 A 460 ARG ASP THR GLU GLU GLU ILE ARG GLU ALA PHE GLY VAL SEQRES 32 A 460 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 33 A 460 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 34 A 460 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 35 A 460 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 36 A 460 MET MET THR ALA LYS HET CR2 A 235 19 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET CA A 507 1 HET CA A 508 1 HET CA A 509 1 HET CA A 510 1 HET NA A 511 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 CA 4(CA 2+) FORMUL 12 NA NA 1+ FORMUL 13 HOH *286(H2 O) HELIX 1 AA1 MET A 47 SER A 69 1 23 HELIX 2 AA2 LYS A 80 ASN A 83 5 4 HELIX 3 AA3 SER A 171 THR A 178 5 8 HELIX 4 AA4 PRO A 225 VAL A 230 5 6 HELIX 5 AA5 VAL A 237 SER A 241 5 5 HELIX 6 AA6 PRO A 244 HIS A 250 5 7 HELIX 7 AA7 ASP A 251 ALA A 256 1 6 HELIX 8 AA8 THR A 319 ASP A 334 1 16 HELIX 9 AA9 THR A 342 LEU A 353 1 12 HELIX 10 AB1 THR A 358 GLU A 368 1 11 HELIX 11 AB2 PHE A 379 TYR A 392 1 14 HELIX 12 AB3 THR A 395 ASP A 407 1 13 HELIX 13 AB4 SER A 415 LEU A 426 1 12 HELIX 14 AB5 GLU A 433 ASP A 443 1 11 HELIX 15 AB6 ASN A 451 MET A 459 1 9 SHEET 1 AA112 VAL A 74 ASP A 79 0 SHEET 2 AA112 GLY A 84 ASN A 94 -1 O GLY A 84 N ASP A 79 SHEET 3 AA112 VAL A 100 PRO A 111 -1 O HIS A 105 N TYR A 89 SHEET 4 AA112 TYR A 261 PHE A 269 -1 O ILE A 262 N THR A 110 SHEET 5 AA112 ASN A 274 GLU A 284 -1 O TYR A 275 N ILE A 267 SHEET 6 AA112 THR A 287 ILE A 297 -1 O GLU A 293 N ARG A 278 SHEET 7 AA112 VAL A 180 VAL A 191 1 N GLU A 186 O ILE A 292 SHEET 8 AA112 HIS A 194 ASP A 205 -1 O GLY A 202 N ILE A 183 SHEET 9 AA112 LYS A 210 CYS A 217 -1 O LYS A 210 N ASP A 205 SHEET 10 AA112 HIS A 141 ALA A 151 -1 N MET A 142 O PHE A 215 SHEET 11 AA112 HIS A 123 SER A 132 -1 N GLN A 128 O PHE A 147 SHEET 12 AA112 VAL A 74 ASP A 79 -1 N VAL A 74 O LEU A 125 SHEET 1 AA2 2 THR A 340 ILE A 341 0 SHEET 2 AA2 2 ILE A 377 ASP A 378 -1 O ILE A 377 N ILE A 341 LINK C LEU A 233 N1 CR2 A 235 1555 1555 1.41 LINK C3 CR2 A 235 N VAL A 237 1555 1555 1.40 LINK OD1 ASP A 271 NA NA A 511 1555 1555 2.17 LINK OD1 ASP A 334 CA CA A 507 1555 1555 2.27 LINK OD1 ASP A 336 CA CA A 507 1555 1555 2.33 LINK OD1 ASP A 338 CA CA A 507 1555 1555 2.31 LINK O THR A 340 CA CA A 507 1555 1555 2.37 LINK OE1 GLU A 345 CA CA A 507 1555 1555 2.62 LINK OE2 GLU A 345 CA CA A 507 1555 1555 2.52 LINK OD1 ASP A 370 CA CA A 508 1555 1555 2.25 LINK OD1 ASP A 372 CA CA A 508 1555 1555 2.29 LINK OD1 ASP A 374 CA CA A 508 1555 1555 2.31 LINK O THR A 376 CA CA A 508 1555 1555 2.39 LINK OD2BASP A 378 CA CA A 508 1555 1555 2.31 LINK OE1 GLU A 381 CA CA A 508 1555 1555 2.43 LINK OE2 GLU A 381 CA CA A 508 1555 1555 2.68 LINK OD1 ASP A 407 CA CA A 509 1555 1555 2.40 LINK OD1 ASP A 409 CA CA A 509 1555 1555 2.27 LINK OD1 ASN A 411 CA CA A 509 1555 1555 2.35 LINK O TYR A 413 CA CA A 509 1555 1555 2.16 LINK OE1 GLU A 418 CA CA A 509 1555 1555 2.33 LINK OE2 GLU A 418 CA CA A 509 1555 1555 2.26 LINK OD1 ASP A 443 CA CA A 510 1555 1555 2.22 LINK OD1 ASP A 445 CA CA A 510 1555 1555 2.46 LINK OD1 ASP A 447 CA CA A 510 1555 1555 2.39 LINK O GLN A 449 CA CA A 510 1555 1555 2.26 LINK OE1 GLU A 454 CA CA A 510 1555 1555 2.47 LINK OE2 GLU A 454 CA CA A 510 1555 1555 2.47 LINK CA CA A 507 O HOH A 710 1555 1555 2.23 LINK CA CA A 509 O HOH A 616 1555 1555 2.60 LINK CA CA A 510 O HOH A 663 1555 1555 2.23 CISPEP 1 MET A 257 PRO A 258 0 6.21 CRYST1 118.293 118.293 98.703 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010131 0.00000 CONECT 1345 1351 CONECT 1351 1345 1352 CONECT 1352 1351 1353 CONECT 1353 1352 1354 1355 CONECT 1354 1353 1358 CONECT 1355 1353 1356 1359 CONECT 1356 1355 1357 1358 CONECT 1357 1356 CONECT 1358 1354 1356 1362 CONECT 1359 1355 1360 CONECT 1360 1359 1361 1370 CONECT 1361 1360 CONECT 1362 1358 1363 CONECT 1363 1362 1364 1365 CONECT 1364 1363 1366 CONECT 1365 1363 1367 CONECT 1366 1364 1368 CONECT 1367 1365 1368 CONECT 1368 1366 1367 1369 CONECT 1369 1368 CONECT 1370 1360 CONECT 1678 3171 CONECT 2175 3167 CONECT 2192 3167 CONECT 2204 3167 CONECT 2213 3167 CONECT 2255 3167 CONECT 2256 3167 CONECT 2445 3168 CONECT 2458 3168 CONECT 2470 3168 CONECT 2479 3168 CONECT 2502 3168 CONECT 2528 3168 CONECT 2529 3168 CONECT 2751 3169 CONECT 2768 3169 CONECT 2780 3169 CONECT 2789 3169 CONECT 2829 3169 CONECT 2830 3169 CONECT 3004 3170 CONECT 3020 3170 CONECT 3032 3170 CONECT 3041 3170 CONECT 3090 3170 CONECT 3091 3170 CONECT 3143 3144 3145 CONECT 3144 3143 CONECT 3145 3143 3146 CONECT 3146 3145 CONECT 3147 3148 3149 CONECT 3148 3147 CONECT 3149 3147 3150 CONECT 3150 3149 CONECT 3151 3152 3153 CONECT 3152 3151 CONECT 3153 3151 3154 CONECT 3154 3153 CONECT 3155 3156 3157 CONECT 3156 3155 CONECT 3157 3155 3158 CONECT 3158 3157 CONECT 3159 3160 3161 CONECT 3160 3159 CONECT 3161 3159 3162 CONECT 3162 3161 CONECT 3163 3164 3165 CONECT 3164 3163 CONECT 3165 3163 3166 CONECT 3166 3165 CONECT 3167 2175 2192 2204 2213 CONECT 3167 2255 2256 3281 CONECT 3168 2445 2458 2470 2479 CONECT 3168 2502 2528 2529 CONECT 3169 2751 2768 2780 2789 CONECT 3169 2829 2830 3187 CONECT 3170 3004 3020 3032 3041 CONECT 3170 3090 3091 3234 CONECT 3171 1678 CONECT 3187 3169 CONECT 3234 3170 CONECT 3281 3167 MASTER 484 0 12 15 14 0 0 6 3423 1 83 36 END