HEADER TOXIN/ANTITOXIN 29-OCT-24 9KAN TITLE CRYSTAL STRUCTURE OF THE C. JEJUNI VAPD-VAPW TOXIN-ANTITOXIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VAPD; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL FUSION WITH 6XHIS TAG; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VAPW ANTITOXIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: N-TERMINAL FUSION WITH STREP-TAG AND C-MYC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: BCB58_08990, BFD99_07080, C1418_08930, E7N58_08980, SOURCE 5 E8P16_09265, F0J89_08805, GNO00_08035, GSU20_08840; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 10 ORGANISM_TAXID: 197; SOURCE 11 GENE: B7A03_08765, BCB58_08995, BFD99_07085, C1418_08935, SOURCE 12 E7N58_08985, E8P16_09270, F0J89_08810, FBF07_08610, GNO00_08040, SOURCE 13 GSU20_08845; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOXIN-ANTITOXIN, FERREDOXIN-LIKE FOLD, DIMER, ANTITOXIN, TOXIN- KEYWDS 2 ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.POPOV,K.GILEP,S.TAGAMI REVDAT 1 12-FEB-25 9KAN 0 JRNL AUTH K.GILEP,A.POPOV,D.BIKMETOV,S.TAGAMI,S.DUBILEY,K.SEVERINOV JRNL TITL NOVEL TYPE II TOXIN-ANTITOXIN SYSTEMS WITH VAPD-LIKE JRNL TITL 2 PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 83033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 3845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4000 - 5.8300 1.00 2946 136 0.2118 0.2123 REMARK 3 2 5.8300 - 4.6300 1.00 2922 148 0.1916 0.2190 REMARK 3 3 4.6300 - 4.0500 1.00 2935 144 0.1789 0.2410 REMARK 3 4 4.0500 - 3.6800 1.00 2968 144 0.1849 0.2039 REMARK 3 5 3.6800 - 3.4100 1.00 2923 128 0.2032 0.2351 REMARK 3 6 3.4100 - 3.2100 1.00 2959 144 0.2278 0.2513 REMARK 3 7 3.2100 - 3.0500 1.00 2924 143 0.2355 0.2397 REMARK 3 8 3.0500 - 2.9200 1.00 2955 136 0.2317 0.2317 REMARK 3 9 2.9200 - 2.8100 1.00 2927 143 0.2315 0.2675 REMARK 3 10 2.8100 - 2.7100 1.00 2899 145 0.2448 0.3202 REMARK 3 11 2.7100 - 2.6200 1.00 2977 148 0.2404 0.2580 REMARK 3 12 2.6200 - 2.5500 1.00 2951 137 0.2413 0.2954 REMARK 3 13 2.5500 - 2.4800 1.00 2936 139 0.2261 0.2783 REMARK 3 14 2.4800 - 2.4200 1.00 2902 138 0.2362 0.2798 REMARK 3 15 2.4200 - 2.3700 1.00 2978 139 0.2449 0.2656 REMARK 3 16 2.3700 - 2.3200 1.00 2911 153 0.2440 0.2885 REMARK 3 17 2.3200 - 2.2700 1.00 2981 139 0.2502 0.2697 REMARK 3 18 2.2700 - 2.2300 1.00 2899 146 0.2511 0.2664 REMARK 3 19 2.2300 - 2.1900 1.00 2926 150 0.2523 0.2630 REMARK 3 20 2.1900 - 2.1500 1.00 2956 142 0.2641 0.3185 REMARK 3 21 2.1500 - 2.1200 1.00 2916 129 0.2768 0.3004 REMARK 3 22 2.1200 - 2.0800 1.00 2941 163 0.2696 0.3360 REMARK 3 23 2.0800 - 2.0500 1.00 2938 135 0.3041 0.3711 REMARK 3 24 2.0500 - 2.0200 1.00 2916 145 0.3036 0.2815 REMARK 3 25 2.0200 - 2.0000 1.00 2935 156 0.3081 0.3350 REMARK 3 26 2.0000 - 1.9700 0.99 2924 145 0.3122 0.2918 REMARK 3 27 1.9700 - 1.9500 0.97 2843 130 0.3183 0.3538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.257 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3647 REMARK 3 ANGLE : 0.947 4894 REMARK 3 CHIRALITY : 0.057 510 REMARK 3 PLANARITY : 0.016 607 REMARK 3 DIHEDRAL : 14.905 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83090 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.403 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 1000; 100 MM SODIUM REMARK 280 PHOSPHATE DIBASIC/CITRIC ACID, PH 4.2; 200 MM LITHIUM SULFATE., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.84200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.84200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.40350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.40350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.84200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.40350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.84200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.40350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -94.80700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A 105 REMARK 465 LYS A 106 REMARK 465 LEU A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 PHE A 110 REMARK 465 THR A 111 REMARK 465 GLU A 112 REMARK 465 LYS A 113 REMARK 465 THR A 114 REMARK 465 PRO A 115 REMARK 465 LYS A 116 REMARK 465 ASN A 117 REMARK 465 GLN A 118 REMARK 465 LYS A 119 REMARK 465 LEU A 120 REMARK 465 LYS A 121 REMARK 465 ASP A 122 REMARK 465 LEU A 123 REMARK 465 GLU A 124 REMARK 465 ARG A 125 REMARK 465 MET B -27 REMARK 465 ALA B -26 REMARK 465 SER B -25 REMARK 465 MET B -24 REMARK 465 THR B -23 REMARK 465 GLY B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 GLU B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 GLN B -16 REMARK 465 PHE B -15 REMARK 465 GLU B -14 REMARK 465 LYS B -13 REMARK 465 LEU B -12 REMARK 465 GLU B -11 REMARK 465 GLN B -10 REMARK 465 LYS B -9 REMARK 465 LEU B -8 REMARK 465 ILE B -7 REMARK 465 SER B -6 REMARK 465 GLU B -5 REMARK 465 GLU B -4 REMARK 465 MET C -12 REMARK 465 GLY C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 ARG C 43 REMARK 465 GLN C 44 REMARK 465 TYR C 45 REMARK 465 SER C 46 REMARK 465 GLY C 47 REMARK 465 LYS C 101 REMARK 465 ASP C 102 REMARK 465 PHE C 103 REMARK 465 HIS C 104 REMARK 465 GLN C 105 REMARK 465 LYS C 106 REMARK 465 LEU C 107 REMARK 465 LYS C 108 REMARK 465 GLU C 109 REMARK 465 PHE C 110 REMARK 465 THR C 111 REMARK 465 GLU C 112 REMARK 465 LYS C 113 REMARK 465 THR C 114 REMARK 465 PRO C 115 REMARK 465 LYS C 116 REMARK 465 ASN C 117 REMARK 465 GLN C 118 REMARK 465 LYS C 119 REMARK 465 LEU C 120 REMARK 465 LYS C 121 REMARK 465 ASP C 122 REMARK 465 LEU C 123 REMARK 465 GLU C 124 REMARK 465 ARG C 125 REMARK 465 MET D -27 REMARK 465 ALA D -26 REMARK 465 SER D -25 REMARK 465 MET D -24 REMARK 465 THR D -23 REMARK 465 GLY D -22 REMARK 465 GLY D -21 REMARK 465 LEU D -20 REMARK 465 GLU D -19 REMARK 465 HIS D -18 REMARK 465 PRO D -17 REMARK 465 GLN D -16 REMARK 465 PHE D -15 REMARK 465 GLU D -14 REMARK 465 LYS D -13 REMARK 465 LEU D -12 REMARK 465 GLU D -11 REMARK 465 GLN D -10 REMARK 465 LYS D -9 REMARK 465 LEU D -8 REMARK 465 ILE D -7 REMARK 465 SER D -6 REMARK 465 GLU D -5 REMARK 465 GLU D 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 45 -68.54 -121.78 REMARK 500 SER A 46 138.66 -177.64 REMARK 500 GLU A 87 145.41 -173.65 REMARK 500 CYS A 99 42.32 -86.48 REMARK 500 LYS A 101 60.02 38.58 REMARK 500 THR C 24 0.76 -69.85 REMARK 500 CYS C 99 61.02 -103.52 REMARK 500 ASN D 45 -169.20 -163.49 REMARK 500 LYS D 67 -64.77 -106.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 43 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 335 DISTANCE = 5.88 ANGSTROMS DBREF 9KAN A -12 125 PDB 9KAN 9KAN -12 125 DBREF1 9KAN B 2 107 UNP A0A3Z8NCW8_CAMJU DBREF2 9KAN B A0A3Z8NCW8 2 107 DBREF 9KAN C -12 125 PDB 9KAN 9KAN -12 125 DBREF1 9KAN D 2 107 UNP A0A3Z8NCW8_CAMJU DBREF2 9KAN D A0A3Z8NCW8 2 107 SEQADV 9KAN MET B -27 UNP A0A3Z8NCW INITIATING METHIONINE SEQADV 9KAN ALA B -26 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN SER B -25 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN MET B -24 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN THR B -23 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLY B -22 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLY B -21 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU B -20 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -19 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN HIS B -18 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN PRO B -17 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLN B -16 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN PHE B -15 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -14 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LYS B -13 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU B -12 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -11 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLN B -10 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LYS B -9 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU B -8 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ILE B -7 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN SER B -6 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -5 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -4 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ASP B -3 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU B -2 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU B -1 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ASP B 0 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU B 1 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN MET D -27 UNP A0A3Z8NCW INITIATING METHIONINE SEQADV 9KAN ALA D -26 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN SER D -25 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN MET D -24 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN THR D -23 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLY D -22 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLY D -21 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU D -20 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -19 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN HIS D -18 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN PRO D -17 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLN D -16 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN PHE D -15 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -14 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LYS D -13 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU D -12 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -11 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLN D -10 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LYS D -9 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU D -8 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ILE D -7 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN SER D -6 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -5 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -4 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ASP D -3 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU D -2 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN GLU D -1 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN ASP D 0 UNP A0A3Z8NCW EXPRESSION TAG SEQADV 9KAN LEU D 1 UNP A0A3Z8NCW EXPRESSION TAG SEQRES 1 A 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 138 PRO GLY ILE ASN ARG LYS ALA ILE ASN PHE ASP LEU SER SEQRES 3 A 138 THR LYS SER LEU GLU LYS TYR PHE LYS ASP THR ARG GLU SEQRES 4 A 138 PRO TYR SER LEU ILE LYS LYS PHE MET LEU GLU ASN GLY SEQRES 5 A 138 PHE GLU HIS ARG GLN TYR SER GLY TYR THR SER LYS GLU SEQRES 6 A 138 PRO ILE ASN GLU ARG ARG VAL ILE ARG ILE ILE ASN LYS SEQRES 7 A 138 LEU THR LYS LYS PHE THR TRP LEU GLY GLU CYS VAL LYS SEQRES 8 A 138 GLU PHE ASP ILE THR GLU ILE GLY GLU GLN TYR SER LEU SEQRES 9 A 138 LYS GLU THR ILE GLN ASP LEU CYS ALA LYS ASP PHE HIS SEQRES 10 A 138 GLN LYS LEU LYS GLU PHE THR GLU LYS THR PRO LYS ASN SEQRES 11 A 138 GLN LYS LEU LYS ASP LEU GLU ARG SEQRES 1 B 135 MET ALA SER MET THR GLY GLY LEU GLU HIS PRO GLN PHE SEQRES 2 B 135 GLU LYS LEU GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 3 B 135 GLU ASP LEU ALA TYR PRO LEU LEU GLY THR ARG ILE VAL SEQRES 4 B 135 LEU ASP GLU GLU LYS ILE LEU LYS GLU GLY LYS TYR ASN SEQRES 5 B 135 LEU GLU ASP MET TYR LYS MET ILE ASP GLU TYR ALA LYS SEQRES 6 B 135 GLU SER GLY MET ILE LYS ILE ASN LYS GLU THR TYR HIS SEQRES 7 B 135 CYS LYS GLY ASP LYS TYR ASP LEU GLY CYS MET THR LEU SEQRES 8 B 135 PHE ILE TYR LYS TYR LEU ILE ASP SER GLU TRP PHE THR SEQRES 9 B 135 LYS ASN ALA LYS GLU TRP ILE TRP ILE SER GLU LYS GLU SEQRES 10 B 135 GLY ASN SER ASP LEU ILE SER ALA SER LYS ALA GLU GLY SEQRES 11 B 135 GLU GLY ILE TRP GLU SEQRES 1 C 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 C 138 PRO GLY ILE ASN ARG LYS ALA ILE ASN PHE ASP LEU SER SEQRES 3 C 138 THR LYS SER LEU GLU LYS TYR PHE LYS ASP THR ARG GLU SEQRES 4 C 138 PRO TYR SER LEU ILE LYS LYS PHE MET LEU GLU ASN GLY SEQRES 5 C 138 PHE GLU HIS ARG GLN TYR SER GLY TYR THR SER LYS GLU SEQRES 6 C 138 PRO ILE ASN GLU ARG ARG VAL ILE ARG ILE ILE ASN LYS SEQRES 7 C 138 LEU THR LYS LYS PHE THR TRP LEU GLY GLU CYS VAL LYS SEQRES 8 C 138 GLU PHE ASP ILE THR GLU ILE GLY GLU GLN TYR SER LEU SEQRES 9 C 138 LYS GLU THR ILE GLN ASP LEU CYS ALA LYS ASP PHE HIS SEQRES 10 C 138 GLN LYS LEU LYS GLU PHE THR GLU LYS THR PRO LYS ASN SEQRES 11 C 138 GLN LYS LEU LYS ASP LEU GLU ARG SEQRES 1 D 135 MET ALA SER MET THR GLY GLY LEU GLU HIS PRO GLN PHE SEQRES 2 D 135 GLU LYS LEU GLU GLN LYS LEU ILE SER GLU GLU ASP LEU SEQRES 3 D 135 GLU ASP LEU ALA TYR PRO LEU LEU GLY THR ARG ILE VAL SEQRES 4 D 135 LEU ASP GLU GLU LYS ILE LEU LYS GLU GLY LYS TYR ASN SEQRES 5 D 135 LEU GLU ASP MET TYR LYS MET ILE ASP GLU TYR ALA LYS SEQRES 6 D 135 GLU SER GLY MET ILE LYS ILE ASN LYS GLU THR TYR HIS SEQRES 7 D 135 CYS LYS GLY ASP LYS TYR ASP LEU GLY CYS MET THR LEU SEQRES 8 D 135 PHE ILE TYR LYS TYR LEU ILE ASP SER GLU TRP PHE THR SEQRES 9 D 135 LYS ASN ALA LYS GLU TRP ILE TRP ILE SER GLU LYS GLU SEQRES 10 D 135 GLY ASN SER ASP LEU ILE SER ALA SER LYS ALA GLU GLY SEQRES 11 D 135 GLU GLY ILE TRP GLU HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 C 201 5 HET SO4 C 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 7(O4 S 2-) FORMUL 12 HOH *181(H2 O) HELIX 1 AA1 SER A 13 GLU A 18 1 6 HELIX 2 AA2 THR A 24 ASN A 38 1 15 HELIX 3 AA3 ASN A 55 PHE A 70 1 16 HELIX 4 AA4 TRP A 72 CYS A 76 1 5 HELIX 5 AA5 LEU A 91 CYS A 99 1 9 HELIX 6 AA6 ASP B 13 GLY B 21 1 9 HELIX 7 AA7 ASN B 24 GLY B 40 1 17 HELIX 8 AA8 TYR B 56 LYS B 67 1 12 HELIX 9 AA9 SER B 72 LYS B 77 1 6 HELIX 10 AB1 LEU B 94 GLY B 102 1 9 HELIX 11 AB2 SER C 13 PHE C 21 1 9 HELIX 12 AB3 ARG C 25 ASN C 38 1 14 HELIX 13 AB4 ASN C 55 PHE C 70 1 16 HELIX 14 AB5 TRP C 72 CYS C 76 1 5 HELIX 15 AB6 LEU C 91 CYS C 99 1 9 HELIX 16 AB7 ASP D 13 GLU D 20 1 8 HELIX 17 AB8 ASN D 24 GLY D 40 1 17 HELIX 18 AB9 TYR D 56 LYS D 67 1 12 HELIX 19 AC1 SER D 72 LYS D 77 1 6 HELIX 20 AC2 LEU D 94 GLY D 102 1 9 SHEET 1 AA1 4 PHE A 40 HIS A 42 0 SHEET 2 AA1 4 TYR A 48 SER A 50 -1 O THR A 49 N GLU A 41 SHEET 3 AA1 4 ARG A 5 LEU A 12 -1 N ILE A 8 O TYR A 48 SHEET 4 AA1 4 VAL A 77 ILE A 85 -1 O LYS A 78 N ASP A 11 SHEET 1 AA2 5 ILE B 42 LYS B 43 0 SHEET 2 AA2 5 THR B 48 HIS B 50 -1 O HIS B 50 N ILE B 42 SHEET 3 AA2 5 LEU B 6 LEU B 12 -1 N THR B 8 O TYR B 49 SHEET 4 AA2 5 ALA B 79 SER B 86 -1 O ILE B 85 N GLY B 7 SHEET 5 AA2 5 SER B 92 ASP B 93 -1 O SER B 92 N TRP B 84 SHEET 1 AA3 2 ARG C 5 LEU C 12 0 SHEET 2 AA3 2 VAL C 77 ILE C 85 -1 O LYS C 78 N ASP C 11 SHEET 1 AA4 2 PHE C 40 GLU C 41 0 SHEET 2 AA4 2 THR C 49 SER C 50 -1 O THR C 49 N GLU C 41 SHEET 1 AA5 5 ILE D 42 ASN D 45 0 SHEET 2 AA5 5 THR D 48 HIS D 50 -1 O HIS D 50 N ILE D 42 SHEET 3 AA5 5 LEU D 6 LEU D 12 -1 N THR D 8 O TYR D 49 SHEET 4 AA5 5 ALA D 79 SER D 86 -1 O ILE D 85 N GLY D 7 SHEET 5 AA5 5 SER D 92 ASP D 93 -1 O SER D 92 N TRP D 84 CRYST1 89.578 94.807 137.684 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007263 0.00000