HEADER BIOSYNTHETIC PROTEIN 05-NOV-24 9KF4 TITLE CRYSTAL STRUCTURE OF STREPTOMYCES SP. SULFOTRANSFERASE CPZ4 INVOLVED TITLE 2 IN CAPRAZAMYCINS SYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 GENE: CPZ4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFOTRANSFERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.IWAMOTO,M.WATANABE,K.SUZUKI,T.TERAMOTO,Y.KAKUTA REVDAT 1 05-NOV-25 9KF4 0 JRNL AUTH Y.IWAMOTO,M.WATANABE,K.KAWANO,K.SUZUKI,M.YAZAKI,M.ARISAWA, JRNL AUTH 2 E.NISHIMOTO,M.IGARASHI,T.TERAMOTO,Y.KAKUTA JRNL TITL CRYSTAL STRUCTURE OF STREPTOMYCES SP. SULFOTRANSFERASE CPZ4 JRNL TITL 2 INVOLVED IN CAPRAZAMYCIN SYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8900 - 4.6500 1.00 3584 156 0.1671 0.1844 REMARK 3 2 4.6500 - 3.6900 1.00 3374 147 0.1315 0.1608 REMARK 3 3 3.6900 - 3.2200 1.00 3326 146 0.1598 0.2134 REMARK 3 4 3.2200 - 2.9300 1.00 3276 143 0.1745 0.2095 REMARK 3 5 2.9300 - 2.7200 1.00 3269 143 0.1607 0.1861 REMARK 3 6 2.7200 - 2.5600 1.00 3272 142 0.1764 0.2244 REMARK 3 7 2.5600 - 2.4300 1.00 3229 141 0.1715 0.2104 REMARK 3 8 2.4300 - 2.3300 1.00 3242 142 0.1637 0.2138 REMARK 3 9 2.3300 - 2.2400 1.00 3213 140 0.1858 0.2116 REMARK 3 10 2.2400 - 2.1600 1.00 3233 141 0.1828 0.2344 REMARK 3 11 2.1600 - 2.0900 1.00 3202 140 0.2143 0.2448 REMARK 3 12 2.0900 - 2.0300 1.00 3221 140 0.2729 0.3359 REMARK 3 13 2.0300 - 1.9800 1.00 3187 140 0.2685 0.3057 REMARK 3 14 1.9800 - 1.9300 1.00 3199 139 0.3002 0.3143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3866 REMARK 3 ANGLE : 0.961 5312 REMARK 3 CHIRALITY : 0.069 576 REMARK 3 PLANARITY : 0.012 717 REMARK 3 DIHEDRAL : 14.631 1411 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.7789 -11.7204 -14.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.7635 T22: 0.2722 REMARK 3 T33: 0.4325 T12: -0.0852 REMARK 3 T13: 0.0016 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.8996 L22: 1.6088 REMARK 3 L33: 1.8379 L12: 0.2976 REMARK 3 L13: -0.0480 L23: -0.3428 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: 0.0548 S13: -0.0032 REMARK 3 S21: 0.2411 S22: 0.1670 S23: -0.0437 REMARK 3 S31: -0.2079 S32: 0.0190 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PEG400, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.36667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.18333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 146.36667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.36667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 73.18333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 146.36667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 73.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 914 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 42 REMARK 465 GLY A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 GLY A 50 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 183 N CA C O CB CG CD REMARK 480 GLN A 183 OE1 NE2 REMARK 480 MET A 442 N CA C O CB CG SD REMARK 480 MET A 442 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 129 O HOH A 704 1.40 REMARK 500 H GLY A 75 O HOH A 717 1.51 REMARK 500 HE2 HIS A 52 O THR A 96 1.57 REMARK 500 O HOH A 769 O HOH A 1002 1.72 REMARK 500 O HOH A 1022 O HOH A 1084 1.90 REMARK 500 O HOH A 752 O HOH A 926 1.92 REMARK 500 OG SER A 489 O HOH A 701 1.93 REMARK 500 OE2 GLU A 196 O HOH A 702 1.93 REMARK 500 O HOH A 771 O HOH A 849 1.94 REMARK 500 O HOH A 711 O HOH A 714 1.98 REMARK 500 O HOH A 973 O HOH A 1055 2.01 REMARK 500 O HOH A 1031 O HOH A 1066 2.02 REMARK 500 O HOH A 707 O HOH A 849 2.03 REMARK 500 O HOH A 1060 O HOH A 1071 2.04 REMARK 500 O HOH A 804 O HOH A 996 2.04 REMARK 500 O HOH A 1017 O HOH A 1023 2.06 REMARK 500 O HOH A 1091 O HOH A 1094 2.06 REMARK 500 O HOH A 1024 O HOH A 1032 2.06 REMARK 500 OD2 ASP A 68 O HOH A 703 2.09 REMARK 500 O HOH A 996 O HOH A 1078 2.09 REMARK 500 O HOH A 796 O HOH A 1043 2.11 REMARK 500 NH1 ARG A 129 O HOH A 704 2.11 REMARK 500 O HOH A 727 O HOH A 1063 2.12 REMARK 500 O HOH A 718 O HOH A 942 2.16 REMARK 500 O HOH A 988 O HOH A 1030 2.17 REMARK 500 NH1 ARG A 129 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 135 O HOH A 869 10554 2.04 REMARK 500 O HOH A 1018 O HOH A 1050 4545 2.04 REMARK 500 O HOH A 743 O HOH A 1007 8555 2.11 REMARK 500 O HOH A 829 O HOH A 1097 8555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 479 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 63.22 -156.46 REMARK 500 SER A 72 63.22 -159.74 REMARK 500 ASP A 203 46.39 70.18 REMARK 500 HIS A 233 -34.38 -133.01 REMARK 500 HIS A 253 69.60 60.48 REMARK 500 ASP A 309 80.07 51.72 REMARK 500 GLN A 372 -167.90 69.11 REMARK 500 ASP A 429 -156.61 -94.03 REMARK 500 TRP A 448 81.36 -154.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 270 0.08 SIDE CHAIN REMARK 500 ARG A 513 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1095 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1096 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1097 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1098 DISTANCE = 11.90 ANGSTROMS REMARK 525 HOH A1099 DISTANCE = 77.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 309 OD1 REMARK 620 2 ASP A 309 OD2 51.3 REMARK 620 3 MET A 375 O 130.2 79.0 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9KF1 RELATED DB: PDB REMARK 900 RELATED ID: 9KF2 RELATED DB: PDB REMARK 900 RELATED ID: 9KF3 RELATED DB: PDB REMARK 900 RELATED ID: 9KF6 RELATED DB: PDB DBREF 9KF4 A 51 513 UNP D6N7U5 D6N7U5_9ACTN 51 513 SEQADV 9KF4 MET A 42 UNP D6N7U5 INITIATING METHIONINE SEQADV 9KF4 GLY A 43 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 44 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 45 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 46 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 47 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 48 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 HIS A 49 UNP D6N7U5 EXPRESSION TAG SEQADV 9KF4 GLY A 50 UNP D6N7U5 EXPRESSION TAG SEQRES 1 A 472 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY HIS PRO LEU SEQRES 2 A 472 SER LEU VAL THR ARG PRO ASP LEU LEU PRO PRO ALA ILE SEQRES 3 A 472 ASP VAL ARG GLU SER ALA PRO GLY THR SER PRO GLY TYR SEQRES 4 A 472 VAL PHE LEU ALA PRO LYS THR GLY ASP VAL LEU GLN GLY SEQRES 5 A 472 PRO GLY THR LEU GLN SER GLY PRO MET ILE VAL ASP ASN SEQRES 6 A 472 GLU GLY GLU PRO VAL TRP PHE LEU PRO ARG GLY ILE GLY SEQRES 7 A 472 ALA LEU ASN TYR VAL THR ALA PHE GLN ARG GLN THR TYR SEQRES 8 A 472 ARG GLY GLU PRO VAL LEU THR TRP TRP GLU GLY ALA PRO SEQRES 9 A 472 LEU PRO THR GLY VAL GLY VAL GLY TYR TRP VAL VAL MET SEQRES 10 A 472 ASP GLN SER TYR ARG GLU ILE ALA ARG ILE ARG ALA GLY SEQRES 11 A 472 LYS GLY HIS ALA GLY ALA ASP LEU HIS ASP MET GLN ILE SEQRES 12 A 472 THR PRO ASP ASN THR ALA LEU VAL LEU ILE ALA GLU PRO SEQRES 13 A 472 GLN LEU HIS ARG VAL ASP GLY HIS ALA ARG LEU VAL MET SEQRES 14 A 472 ASN ASN ILE VAL GLN GLU ILE ASP ILE ALA SER GLY THR SEQRES 15 A 472 VAL LEU HIS GLU TRP ASP SER LEU ARG HIS VAL ASP VAL SEQRES 16 A 472 ASP GLU SER TYR LEU SER SER ILE PRO LEU LEU PRO TYR SEQRES 17 A 472 ASP TYR VAL HIS ILE ASN SER MET SER VAL ASP THR ASP SEQRES 18 A 472 GLY ASN LEU LEU LEU SER GLY ARG ASN THR HIS ALA VAL SEQRES 19 A 472 TYR LYS VAL ASP ARG HIS SER GLY ASP ILE ILE TRP ARG SEQRES 20 A 472 LEU GLY GLY LYS LYS ASN ASP PHE THR MET GLU LYS GLY SEQRES 21 A 472 ALA SER PHE ALA TRP GLN HIS ASP VAL SER ARG GLU GLY SEQRES 22 A 472 ASP GLY THR LEU SER VAL PHE ASP ASN ALA ALA ALA GLY SEQRES 23 A 472 SER ILE GLU THR GLY GLY GLY ALA PRO PRO GLY THR VAL SEQRES 24 A 472 SER ARG ALA LEU PHE LEU SER VAL ASP THR GLU ALA ARG SEQRES 25 A 472 THR ALA ARG VAL ASP ARG SER TYR THR SER PRO ASP GLY SEQRES 26 A 472 LEU LEU SER THR SER GLN GLY SER MET GLN LEU LEU PRO SEQRES 27 A 472 ASN GLY ASN VAL LEU VAL GLY TRP GLY SER HIS GLY TYR SEQRES 28 A 472 TYR THR GLU TYR ALA ASP SER GLY GLU VAL LEU MET ASN SEQRES 29 A 472 ALA SER PHE LYS ASP PRO LEU VAL ASN SER TYR ARG ALA SEQRES 30 A 472 LEU ARG PHE PRO TRP HIS GLY ARG PRO THR ASP SER PRO SEQRES 31 A 472 ALA VAL ALA GLY ARG ALA GLY ALA HIS GLY MET THR VAL SEQRES 32 A 472 HIS ALA SER TRP ASN GLY ALA THR GLU VAL ALA SER TRP SEQRES 33 A 472 ARG ILE LEU ALA GLY ASP THR PRO GLN SER LEU SER GLY SEQRES 34 A 472 VAL LYS GLU VAL PRO LYS ASP ALA PHE GLU THR SER ALA SEQRES 35 A 472 THR VAL ALA HIS THR SER SER TYR VAL ALA VAL GLN ALA SEQRES 36 A 472 LEU ASP SER THR GLY ARG VAL LEU GLY THR SER LYS ALA SEQRES 37 A 472 SER ARG VAL ARG HET FMT A 601 4 HET MG A 602 1 HET MG A 603 1 HETNAM FMT FORMIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 FMT C H2 O2 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *399(H2 O) HELIX 1 AA1 GLN A 92 LEU A 97 1 6 HELIX 2 AA2 LEU A 231 HIS A 233 5 3 HELIX 3 AA3 ASP A 235 SER A 239 5 5 HELIX 4 AA4 THR A 464 LEU A 468 5 5 SHEET 1 AA1 5 ILE A 67 SER A 72 0 SHEET 2 AA1 5 VAL A 402 PHE A 408 -1 O SER A 407 N ASP A 68 SHEET 3 AA1 5 TYR A 392 TYR A 396 -1 N GLU A 395 O LEU A 403 SHEET 4 AA1 5 VAL A 383 GLY A 386 -1 N VAL A 383 O TYR A 396 SHEET 5 AA1 5 SER A 374 LEU A 377 -1 N SER A 374 O GLY A 386 SHEET 1 AA2 4 PRO A 110 PHE A 113 0 SHEET 2 AA2 4 MET A 102 VAL A 104 -1 N ILE A 103 O VAL A 111 SHEET 3 AA2 4 TYR A 80 LEU A 83 -1 N LEU A 83 O MET A 102 SHEET 4 AA2 4 LEU A 419 PHE A 421 -1 O LEU A 419 N PHE A 82 SHEET 1 AA3 4 TYR A 123 TYR A 132 0 SHEET 2 AA3 4 GLU A 135 PRO A 145 -1 O VAL A 137 N GLN A 130 SHEET 3 AA3 4 GLY A 151 MET A 158 -1 O MET A 158 N LEU A 138 SHEET 4 AA3 4 GLU A 164 ILE A 168 -1 O ILE A 165 N VAL A 157 SHEET 1 AA4 4 MET A 182 ILE A 184 0 SHEET 2 AA4 4 THR A 189 VAL A 202 -1 O LEU A 191 N GLN A 183 SHEET 3 AA4 4 HIS A 205 ASP A 218 -1 O ARG A 207 N HIS A 200 SHEET 4 AA4 4 VAL A 224 ASP A 229 -1 O LEU A 225 N GLU A 216 SHEET 1 AA5 4 SER A 258 VAL A 259 0 SHEET 2 AA5 4 LEU A 265 GLY A 269 -1 O LEU A 266 N SER A 258 SHEET 3 AA5 4 ALA A 274 VAL A 278 -1 O ALA A 274 N GLY A 269 SHEET 4 AA5 4 ILE A 285 LEU A 289 -1 O ILE A 286 N LYS A 277 SHEET 1 AA6 5 THR A 297 MET A 298 0 SHEET 2 AA6 5 THR A 354 THR A 362 1 O ALA A 355 N THR A 297 SHEET 3 AA6 5 ARG A 342 ASP A 349 -1 N SER A 347 O ARG A 356 SHEET 4 AA6 5 LEU A 318 ASP A 322 -1 N LEU A 318 O LEU A 346 SHEET 5 AA6 5 HIS A 308 ARG A 312 -1 N SER A 311 O SER A 319 SHEET 1 AA7 3 ALA A 432 ALA A 437 0 SHEET 2 AA7 3 MET A 442 SER A 447 -1 O HIS A 445 N ALA A 434 SHEET 3 AA7 3 THR A 481 VAL A 485 -1 O ALA A 483 N VAL A 444 SHEET 1 AA8 4 SER A 469 PRO A 475 0 SHEET 2 AA8 4 SER A 456 GLY A 462 -1 N ILE A 459 O LYS A 472 SHEET 3 AA8 4 TYR A 491 LEU A 497 -1 O ALA A 493 N LEU A 460 SHEET 4 AA8 4 VAL A 503 THR A 506 -1 O LEU A 504 N ALA A 496 SHEET 1 AA9 4 SER A 469 PRO A 475 0 SHEET 2 AA9 4 SER A 456 GLY A 462 -1 N ILE A 459 O LYS A 472 SHEET 3 AA9 4 TYR A 491 LEU A 497 -1 O ALA A 493 N LEU A 460 SHEET 4 AA9 4 SER A 510 ARG A 511 -1 O SER A 510 N VAL A 492 LINK OD1 ASP A 309 MG MG A 602 1555 1555 2.59 LINK OD2 ASP A 309 MG MG A 602 1555 1555 2.45 LINK O MET A 375 MG MG A 602 1555 1555 2.28 CRYST1 98.150 98.150 219.550 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010188 0.005882 0.000000 0.00000 SCALE2 0.000000 0.011765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004555 0.00000 CONECT 4240 7404 CONECT 4241 7404 CONECT 5271 7404 CONECT 7400 7401 7402 7403 CONECT 7401 7400 CONECT 7402 7400 CONECT 7403 7400 CONECT 7404 4240 4241 5271 MASTER 436 0 3 4 37 0 0 6 3919 1 8 37 END