HEADER ONCOPROTEIN 06-NOV-24 9KFL TITLE KRAS G12V AND PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A, D, E, H, K; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TIG3 PEPTIDE; COMPND 10 CHAIN: P, Y; COMPND 11 SYNONYM: HRAS-LIKE SUPPRESSOR 4,HRSL4,RAR-RESPONSIVE PROTEIN TIG3, COMPND 12 RETINOIC ACID RECEPTOR RESPONDER PROTEIN 3,RETINOID-INDUCIBLE GENE 1 COMPND 13 PROTEIN,TAZAROTENE-INDUCED GENE 3 PROTEIN,PHOSPHOLIPASE A AND COMPND 14 ACYLTRANSFERASE 4; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS KRAS, MUTANT, G12V, TIG3, STRUCTURAL PROTEIN, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.HA,S.B.JANG,C.W.HAN REVDAT 1 12-NOV-25 9KFL 0 JRNL AUTH M.S.HA,S.B.JANG,C.W.HAN JRNL TITL KRAS G12V AND TIG3 PEPTIDE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 11625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -27.82000 REMARK 3 B22 (A**2) : 22.61000 REMARK 3 B33 (A**2) : 5.21000 REMARK 3 B12 (A**2) : -2.11000 REMARK 3 B13 (A**2) : 6.33000 REMARK 3 B23 (A**2) : 93.96000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.477 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.865 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.793 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7040 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9532 ; 1.664 ; 1.676 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 6.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 384 ;38.063 ;22.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1244 ;17.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;20.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 937 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5227 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3417 ; 6.123 ; 6.484 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4259 ;10.669 ; 9.712 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3623 ; 6.367 ; 6.770 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 30599 ;30.131 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 10 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A D 5647 0.10 0.05 REMARK 3 2 A E 5656 0.10 0.05 REMARK 3 3 A H 5716 0.09 0.05 REMARK 3 4 A K 5731 0.09 0.05 REMARK 3 5 D E 5763 0.09 0.05 REMARK 3 6 D H 5680 0.10 0.05 REMARK 3 7 D K 5669 0.10 0.05 REMARK 3 8 E H 5688 0.10 0.05 REMARK 3 9 E K 5703 0.10 0.05 REMARK 3 10 H K 5770 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12300 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 97.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, 0.2M REMARK 280 POTASSIUM NITRATE (PH 6.8), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, H, K, P, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CD OE1 OE2 REMARK 470 ARG A 97 NE CZ NH1 NH2 REMARK 470 GLU D 62 CD OE1 OE2 REMARK 470 ARG D 97 NE CZ NH1 NH2 REMARK 470 GLU E 62 CD OE1 OE2 REMARK 470 ARG E 97 NE CZ NH1 NH2 REMARK 470 GLU H 62 CD OE1 OE2 REMARK 470 ARG H 97 NE CZ NH1 NH2 REMARK 470 GLU K 62 CD OE1 OE2 REMARK 470 ARG K 97 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER K 17 O3B GDP K 1002 1.94 REMARK 500 N LYS A 16 O3B GDP A 1002 2.04 REMARK 500 N ALA K 146 O6 GDP K 1002 2.13 REMARK 500 OD1 ASP H 54 OH TYR H 71 2.15 REMARK 500 N ALA E 146 O6 GDP E 1002 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE2 TYR D 64 N THR K 2 1654 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 115.53 -37.08 REMARK 500 GLU A 62 32.98 -97.24 REMARK 500 LYS A 117 34.92 74.36 REMARK 500 SER A 122 55.60 -91.51 REMARK 500 GLU D 62 34.79 -76.57 REMARK 500 LYS D 117 37.44 76.33 REMARK 500 SER D 122 51.64 -92.21 REMARK 500 ARG D 149 -0.83 71.73 REMARK 500 GLU E 62 38.14 -88.92 REMARK 500 LYS E 117 34.93 75.65 REMARK 500 SER E 122 49.44 -91.38 REMARK 500 ARG E 149 -1.48 73.41 REMARK 500 ASP H 108 78.12 -118.03 REMARK 500 LYS H 117 33.66 75.06 REMARK 500 SER H 122 47.82 -94.26 REMARK 500 ASP K 33 117.74 -39.73 REMARK 500 LYS K 117 35.57 73.01 REMARK 500 SER K 122 59.73 -100.27 REMARK 500 CYS P 72 100.58 -48.16 REMARK 500 CYS Y 72 170.40 -56.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL P 68 VAL P 69 146.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 ILE A 36 O 136.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 17 OG REMARK 620 2 GDP D1002 O3B 71.4 REMARK 620 3 GDP D1002 O2B 116.8 61.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER E 17 OG REMARK 620 2 GDP E1002 O3B 65.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG K1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER K 17 OG REMARK 620 2 GDP K1002 O2B 96.7 REMARK 620 N 1 DBREF 9KFL A 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 9KFL D 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 9KFL E 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 9KFL H 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 9KFL K 1 168 UNP P01116 RASK_HUMAN 1 168 DBREF 9KFL P 66 73 UNP Q9UL19 PLAT4_HUMAN 66 73 DBREF 9KFL Y 66 73 UNP Q9UL19 PLAT4_HUMAN 66 73 SEQADV 9KFL VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 9KFL VAL D 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 9KFL VAL E 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 9KFL VAL H 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 9KFL VAL K 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 168 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 A 168 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 168 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 168 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 168 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 168 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 168 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 168 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 168 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 168 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 168 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 168 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 168 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 D 168 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 D 168 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 D 168 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 D 168 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 D 168 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 D 168 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 D 168 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 D 168 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 D 168 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 D 168 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 D 168 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 D 168 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 D 168 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 E 168 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 E 168 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 E 168 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 E 168 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 E 168 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 E 168 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 E 168 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 E 168 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 E 168 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 E 168 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 E 168 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 E 168 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 E 168 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 H 168 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 H 168 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 H 168 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 H 168 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 H 168 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 H 168 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 H 168 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 H 168 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 H 168 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 H 168 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 H 168 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 H 168 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 H 168 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 K 168 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 K 168 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 K 168 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 K 168 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 K 168 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 K 168 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 K 168 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 K 168 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 K 168 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 K 168 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 K 168 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 K 168 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 K 168 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 P 8 GLU ASP VAL VAL GLY GLY CYS CYS SEQRES 1 Y 8 GLU ASP VAL VAL GLY GLY CYS CYS HET MG A1001 1 HET GDP A1002 28 HET MG D1001 1 HET GDP D1002 28 HET MG E1001 1 HET GDP E1002 28 HET MG H1001 1 HET GDP H1002 28 HET MG K1001 1 HET GDP K1002 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 8 MG 5(MG 2+) FORMUL 9 GDP 5(C10 H15 N5 O11 P2) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY D 15 ASN D 26 1 12 HELIX 8 AA8 SER D 65 GLY D 75 1 11 HELIX 9 AA9 ASN D 86 ASP D 92 1 7 HELIX 10 AB1 ASP D 92 ASP D 105 1 14 HELIX 11 AB2 ASP D 126 GLY D 138 1 13 HELIX 12 AB3 GLY D 151 GLU D 168 1 18 HELIX 13 AB4 GLY E 15 ASN E 26 1 12 HELIX 14 AB5 SER E 65 GLY E 75 1 11 HELIX 15 AB6 ASN E 86 ASP E 92 1 7 HELIX 16 AB7 ASP E 92 ASP E 105 1 14 HELIX 17 AB8 ASP E 126 GLY E 138 1 13 HELIX 18 AB9 GLY E 151 GLU E 168 1 18 HELIX 19 AC1 GLY H 15 ASN H 26 1 12 HELIX 20 AC2 SER H 65 GLY H 75 1 11 HELIX 21 AC3 ASN H 86 ASP H 92 1 7 HELIX 22 AC4 ASP H 92 ASP H 105 1 14 HELIX 23 AC5 ASP H 126 GLY H 138 1 13 HELIX 24 AC6 GLY H 151 GLU H 168 1 18 HELIX 25 AC7 GLY K 15 ASN K 26 1 12 HELIX 26 AC8 SER K 65 GLY K 75 1 11 HELIX 27 AC9 ASN K 86 ASP K 92 1 7 HELIX 28 AD1 ASP K 92 ASP K 105 1 14 HELIX 29 AD2 ASP K 126 GLY K 138 1 13 HELIX 30 AD3 GLY K 151 GLU K 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP D 38 ILE D 46 0 SHEET 2 AA2 6 GLU D 49 ASP D 57 -1 O ILE D 55 N TYR D 40 SHEET 3 AA2 6 GLU D 3 VAL D 9 1 N TYR D 4 O ASP D 54 SHEET 4 AA2 6 GLY D 77 ALA D 83 1 O LEU D 79 N VAL D 9 SHEET 5 AA2 6 MET D 111 ASN D 116 1 O ASN D 116 N PHE D 82 SHEET 6 AA2 6 PHE D 141 GLU D 143 1 O ILE D 142 N LEU D 113 SHEET 1 AA3 6 ASP E 38 ILE E 46 0 SHEET 2 AA3 6 GLU E 49 ASP E 57 -1 O ILE E 55 N TYR E 40 SHEET 3 AA3 6 GLU E 3 VAL E 9 1 N TYR E 4 O ASP E 54 SHEET 4 AA3 6 GLY E 77 ALA E 83 1 O LEU E 79 N VAL E 9 SHEET 5 AA3 6 MET E 111 ASN E 116 1 O ASN E 116 N PHE E 82 SHEET 6 AA3 6 PHE E 141 GLU E 143 1 O ILE E 142 N LEU E 113 SHEET 1 AA4 6 ASP H 38 ILE H 46 0 SHEET 2 AA4 6 GLU H 49 ASP H 57 -1 O ILE H 55 N TYR H 40 SHEET 3 AA4 6 GLU H 3 GLY H 10 1 N TYR H 4 O ASP H 54 SHEET 4 AA4 6 GLY H 77 ALA H 83 1 O LEU H 79 N VAL H 9 SHEET 5 AA4 6 MET H 111 ASN H 116 1 O ASN H 116 N PHE H 82 SHEET 6 AA4 6 PHE H 141 GLU H 143 1 O ILE H 142 N LEU H 113 SHEET 1 AA5 6 ASP K 38 ILE K 46 0 SHEET 2 AA5 6 GLU K 49 ASP K 57 -1 O ILE K 55 N TYR K 40 SHEET 3 AA5 6 GLU K 3 GLY K 10 1 N TYR K 4 O ASP K 54 SHEET 4 AA5 6 GLY K 77 ALA K 83 1 O LEU K 79 N VAL K 9 SHEET 5 AA5 6 MET K 111 ASN K 116 1 O ASN K 116 N PHE K 82 SHEET 6 AA5 6 PHE K 141 GLU K 143 1 O ILE K 142 N LEU K 113 LINK OG SER A 17 MG MG A1001 1555 1555 2.25 LINK O ILE A 36 MG MG A1001 1555 1555 2.92 LINK OG SER D 17 MG MG D1001 1555 1555 2.36 LINK MG MG D1001 O3B GDP D1002 1555 1555 2.86 LINK MG MG D1001 O2B GDP D1002 1555 1555 2.02 LINK OG SER E 17 MG MG E1001 1555 1555 2.71 LINK MG MG E1001 O3B GDP E1002 1555 1555 2.94 LINK OG SER H 17 MG MG H1001 1555 1555 2.66 LINK OG SER K 17 MG MG K1001 1555 1555 2.58 LINK MG MG K1001 O2B GDP K1002 1555 1555 2.25 CRYST1 41.840 83.416 83.492 120.06 90.07 89.96 P 1 5 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023901 -0.000018 0.000022 0.00000 SCALE2 0.000000 0.011988 0.006937 0.00000 SCALE3 0.000000 0.000000 0.013838 0.00000 CONECT 120 6795 CONECT 273 6795 CONECT 1458 6824 CONECT 2796 6853 CONECT 4134 6882 CONECT 5472 6911 CONECT 6795 120 273 CONECT 6796 6797 6798 6799 6800 CONECT 6797 6796 CONECT 6798 6796 CONECT 6799 6796 CONECT 6800 6796 6801 CONECT 6801 6800 6802 6803 6804 CONECT 6802 6801 CONECT 6803 6801 CONECT 6804 6801 6805 CONECT 6805 6804 6806 CONECT 6806 6805 6807 6808 CONECT 6807 6806 6812 CONECT 6808 6806 6809 6810 CONECT 6809 6808 CONECT 6810 6808 6811 6812 CONECT 6811 6810 CONECT 6812 6807 6810 6813 CONECT 6813 6812 6814 6823 CONECT 6814 6813 6815 CONECT 6815 6814 6816 CONECT 6816 6815 6817 6823 CONECT 6817 6816 6818 6819 CONECT 6818 6817 CONECT 6819 6817 6820 CONECT 6820 6819 6821 6822 CONECT 6821 6820 CONECT 6822 6820 6823 CONECT 6823 6813 6816 6822 CONECT 6824 1458 6827 6828 CONECT 6825 6826 6827 6828 6829 CONECT 6826 6825 CONECT 6827 6824 6825 CONECT 6828 6824 6825 CONECT 6829 6825 6830 CONECT 6830 6829 6831 6832 6833 CONECT 6831 6830 CONECT 6832 6830 CONECT 6833 6830 6834 CONECT 6834 6833 6835 CONECT 6835 6834 6836 6837 CONECT 6836 6835 6841 CONECT 6837 6835 6838 6839 CONECT 6838 6837 CONECT 6839 6837 6840 6841 CONECT 6840 6839 CONECT 6841 6836 6839 6842 CONECT 6842 6841 6843 6852 CONECT 6843 6842 6844 CONECT 6844 6843 6845 CONECT 6845 6844 6846 6852 CONECT 6846 6845 6847 6848 CONECT 6847 6846 CONECT 6848 6846 6849 CONECT 6849 6848 6850 6851 CONECT 6850 6849 CONECT 6851 6849 6852 CONECT 6852 6842 6845 6851 CONECT 6853 2796 6857 CONECT 6854 6855 6856 6857 6858 CONECT 6855 6854 CONECT 6856 6854 CONECT 6857 6853 6854 CONECT 6858 6854 6859 CONECT 6859 6858 6860 6861 6862 CONECT 6860 6859 CONECT 6861 6859 CONECT 6862 6859 6863 CONECT 6863 6862 6864 CONECT 6864 6863 6865 6866 CONECT 6865 6864 6870 CONECT 6866 6864 6867 6868 CONECT 6867 6866 CONECT 6868 6866 6869 6870 CONECT 6869 6868 CONECT 6870 6865 6868 6871 CONECT 6871 6870 6872 6881 CONECT 6872 6871 6873 CONECT 6873 6872 6874 CONECT 6874 6873 6875 6881 CONECT 6875 6874 6876 6877 CONECT 6876 6875 CONECT 6877 6875 6878 CONECT 6878 6877 6879 6880 CONECT 6879 6878 CONECT 6880 6878 6881 CONECT 6881 6871 6874 6880 CONECT 6882 4134 CONECT 6883 6884 6885 6886 6887 CONECT 6884 6883 CONECT 6885 6883 CONECT 6886 6883 CONECT 6887 6883 6888 CONECT 6888 6887 6889 6890 6891 CONECT 6889 6888 CONECT 6890 6888 CONECT 6891 6888 6892 CONECT 6892 6891 6893 CONECT 6893 6892 6894 6895 CONECT 6894 6893 6899 CONECT 6895 6893 6896 6897 CONECT 6896 6895 CONECT 6897 6895 6898 6899 CONECT 6898 6897 CONECT 6899 6894 6897 6900 CONECT 6900 6899 6901 6910 CONECT 6901 6900 6902 CONECT 6902 6901 6903 CONECT 6903 6902 6904 6910 CONECT 6904 6903 6905 6906 CONECT 6905 6904 CONECT 6906 6904 6907 CONECT 6907 6906 6908 6909 CONECT 6908 6907 CONECT 6909 6907 6910 CONECT 6910 6900 6903 6909 CONECT 6911 5472 6914 CONECT 6912 6913 6914 6915 6916 CONECT 6913 6912 CONECT 6914 6911 6912 CONECT 6915 6912 CONECT 6916 6912 6917 CONECT 6917 6916 6918 6919 6920 CONECT 6918 6917 CONECT 6919 6917 CONECT 6920 6917 6921 CONECT 6921 6920 6922 CONECT 6922 6921 6923 6924 CONECT 6923 6922 6928 CONECT 6924 6922 6925 6926 CONECT 6925 6924 CONECT 6926 6924 6927 6928 CONECT 6927 6926 CONECT 6928 6923 6926 6929 CONECT 6929 6928 6930 6939 CONECT 6930 6929 6931 CONECT 6931 6930 6932 CONECT 6932 6931 6933 6939 CONECT 6933 6932 6934 6935 CONECT 6934 6933 CONECT 6935 6933 6936 CONECT 6936 6935 6937 6938 CONECT 6937 6936 CONECT 6938 6936 6939 CONECT 6939 6929 6932 6938 MASTER 365 0 10 30 30 0 0 6 6932 7 151 67 END