HEADER VIRAL PROTEIN 08-NOV-24 9KGI TITLE STRUCTURAL BASIS FOR THE RECOGNITION OF BLOOD GROUP TRISACCHARIDES BY TITLE 2 TULANE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHESUS MACAQUE RECOVIRUS; SOURCE 3 ORGANISM_TAXID: 875071; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS VP1, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.QIAN,J.CONG,X.LI,Y.CHEN REVDAT 1 12-NOV-25 9KGI 0 JRNL AUTH Y.QIAN,J.CONG,X.LI,Y.CHEN JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF BLOOD GROUP JRNL TITL 2 TRISACCHARIDES BY TULANE VIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 95000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053311. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VP1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 ASN A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 THR A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 MET A 29 REMARK 465 SER A 30 REMARK 465 LEU A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 ASN A 36 REMARK 465 SER A 37 REMARK 465 ILE A 38 REMARK 465 ASP A 39 REMARK 465 PRO A 40 REMARK 465 TRP A 41 REMARK 465 ILE A 42 REMARK 465 PHE A 43 REMARK 465 LEU A 44 REMARK 465 ASN A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 GLU A 48 REMARK 465 VAL A 49 REMARK 465 PRO A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 52 REMARK 465 THR A 53 REMARK 465 PHE A 54 REMARK 465 THR A 55 REMARK 465 VAL A 56 REMARK 465 ALA A 57 REMARK 465 SER A 58 REMARK 465 ASN A 59 REMARK 465 THR A 60 REMARK 465 GLN A 61 REMARK 465 PRO A 62 REMARK 465 GLY A 63 REMARK 465 THR A 64 REMARK 465 MET A 65 REMARK 465 LEU A 66 REMARK 465 LEU A 67 REMARK 465 ASP A 68 REMARK 465 ILE A 69 REMARK 465 GLU A 70 REMARK 465 ILE A 71 REMARK 465 SER A 72 REMARK 465 PRO A 73 REMARK 465 GLU A 74 REMARK 465 LEU A 75 REMARK 465 ASN A 76 REMARK 465 ILE A 77 REMARK 465 PHE A 78 REMARK 465 THR A 79 REMARK 465 ALA A 80 REMARK 465 HIS A 81 REMARK 465 MET A 82 REMARK 465 PHE A 83 REMARK 465 ARG A 84 REMARK 465 MET A 85 REMARK 465 TYR A 86 REMARK 465 ALA A 87 REMARK 465 GLY A 88 REMARK 465 TRP A 89 REMARK 465 SER A 90 REMARK 465 GLY A 91 REMARK 465 GLY A 92 REMARK 465 PHE A 93 REMARK 465 ALA A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 LEU A 97 REMARK 465 LEU A 98 REMARK 465 VAL A 99 REMARK 465 ALA A 100 REMARK 465 GLY A 101 REMARK 465 ASN A 102 REMARK 465 ALA A 103 REMARK 465 PHE A 104 REMARK 465 SER A 105 REMARK 465 ALA A 106 REMARK 465 GLY A 107 REMARK 465 LYS A 108 REMARK 465 LEU A 109 REMARK 465 ILE A 110 REMARK 465 VAL A 111 REMARK 465 ALA A 112 REMARK 465 ILE A 113 REMARK 465 ILE A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 ASN A 117 REMARK 465 VAL A 118 REMARK 465 GLN A 119 REMARK 465 VAL A 120 REMARK 465 PRO A 121 REMARK 465 ASN A 122 REMARK 465 SER A 123 REMARK 465 ALA A 124 REMARK 465 TYR A 125 REMARK 465 LEU A 126 REMARK 465 LEU A 127 REMARK 465 THR A 128 REMARK 465 GLY A 129 REMARK 465 PHE A 130 REMARK 465 PRO A 131 REMARK 465 HIS A 132 REMARK 465 GLU A 133 REMARK 465 ILE A 134 REMARK 465 LEU A 135 REMARK 465 ASP A 136 REMARK 465 PHE A 137 REMARK 465 ARG A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 ASP A 141 REMARK 465 GLN A 142 REMARK 465 VAL A 143 REMARK 465 GLU A 144 REMARK 465 ILE A 145 REMARK 465 ILE A 146 REMARK 465 ALA A 147 REMARK 465 PRO A 148 REMARK 465 ASP A 149 REMARK 465 ILE A 150 REMARK 465 LYS A 151 REMARK 465 ASN A 152 REMARK 465 LEU A 153 REMARK 465 ASP A 154 REMARK 465 TYR A 155 REMARK 465 HIS A 156 REMARK 465 PHE A 157 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 ASP A 160 REMARK 465 LYS A 161 REMARK 465 LEU A 162 REMARK 465 GLY A 163 REMARK 465 ARG A 164 REMARK 465 LEU A 165 REMARK 465 VAL A 166 REMARK 465 VAL A 167 REMARK 465 MET A 168 REMARK 465 VAL A 169 REMARK 465 TYR A 170 REMARK 465 SER A 171 REMARK 465 PRO A 172 REMARK 465 LEU A 173 REMARK 465 ARG A 174 REMARK 465 SER A 175 REMARK 465 THR A 176 REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 ASP A 179 REMARK 465 PHE A 180 REMARK 465 GLU A 181 REMARK 465 ILE A 182 REMARK 465 GLU A 183 REMARK 465 ILE A 184 REMARK 465 LYS A 185 REMARK 465 LEU A 186 REMARK 465 LEU A 187 REMARK 465 SER A 188 REMARK 465 ALA A 189 REMARK 465 PRO A 190 REMARK 465 LEU A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 193 REMARK 465 PHE A 194 REMARK 465 LYS A 195 REMARK 465 PHE A 196 REMARK 465 THR A 197 REMARK 465 MET A 198 REMARK 465 LEU A 199 REMARK 465 VAL A 200 REMARK 465 PRO A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 GLN A 204 REMARK 465 ASN A 205 REMARK 465 ASN A 206 REMARK 465 ALA A 207 REMARK 465 LEU A 208 REMARK 465 THR A 494 REMARK 465 GLY A 495 REMARK 465 THR A 496 REMARK 465 ASN A 497 REMARK 465 THR A 498 REMARK 465 THR A 517 REMARK 465 PHE A 518 REMARK 465 VAL A 519 REMARK 465 ILE A 520 REMARK 465 GLY A 521 REMARK 465 ASN A 522 REMARK 465 VAL A 523 REMARK 465 VAL A 524 REMARK 465 ASP A 525 REMARK 465 LEU A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 SER A 529 REMARK 465 ARG A 530 REMARK 465 SER A 531 REMARK 465 LEU A 532 REMARK 465 THR A 533 REMARK 465 PHE A 534 REMARK 465 HIS A 535 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 VAL B 14 REMARK 465 THR B 15 REMARK 465 ASN B 16 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 LEU B 22 REMARK 465 PRO B 23 REMARK 465 GLU B 24 REMARK 465 ALA B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 MET B 29 REMARK 465 SER B 30 REMARK 465 LEU B 31 REMARK 465 ALA B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 VAL B 35 REMARK 465 ASN B 36 REMARK 465 SER B 37 REMARK 465 ILE B 38 REMARK 465 ASP B 39 REMARK 465 PRO B 40 REMARK 465 TRP B 41 REMARK 465 ILE B 42 REMARK 465 PHE B 43 REMARK 465 LEU B 44 REMARK 465 ASN B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 GLU B 48 REMARK 465 VAL B 49 REMARK 465 PRO B 50 REMARK 465 GLY B 51 REMARK 465 GLY B 52 REMARK 465 THR B 53 REMARK 465 PHE B 54 REMARK 465 THR B 55 REMARK 465 VAL B 56 REMARK 465 ALA B 57 REMARK 465 SER B 58 REMARK 465 ASN B 59 REMARK 465 THR B 60 REMARK 465 GLN B 61 REMARK 465 PRO B 62 REMARK 465 GLY B 63 REMARK 465 THR B 64 REMARK 465 MET B 65 REMARK 465 LEU B 66 REMARK 465 LEU B 67 REMARK 465 ASP B 68 REMARK 465 ILE B 69 REMARK 465 GLU B 70 REMARK 465 ILE B 71 REMARK 465 SER B 72 REMARK 465 PRO B 73 REMARK 465 GLU B 74 REMARK 465 LEU B 75 REMARK 465 ASN B 76 REMARK 465 ILE B 77 REMARK 465 PHE B 78 REMARK 465 THR B 79 REMARK 465 ALA B 80 REMARK 465 HIS B 81 REMARK 465 MET B 82 REMARK 465 PHE B 83 REMARK 465 ARG B 84 REMARK 465 MET B 85 REMARK 465 TYR B 86 REMARK 465 ALA B 87 REMARK 465 GLY B 88 REMARK 465 TRP B 89 REMARK 465 SER B 90 REMARK 465 GLY B 91 REMARK 465 GLY B 92 REMARK 465 PHE B 93 REMARK 465 ALA B 94 REMARK 465 ILE B 95 REMARK 465 LYS B 96 REMARK 465 LEU B 97 REMARK 465 LEU B 98 REMARK 465 VAL B 99 REMARK 465 ALA B 100 REMARK 465 GLY B 101 REMARK 465 ASN B 102 REMARK 465 ALA B 103 REMARK 465 PHE B 104 REMARK 465 SER B 105 REMARK 465 ALA B 106 REMARK 465 GLY B 107 REMARK 465 LYS B 108 REMARK 465 LEU B 109 REMARK 465 ILE B 110 REMARK 465 VAL B 111 REMARK 465 ALA B 112 REMARK 465 ILE B 113 REMARK 465 ILE B 114 REMARK 465 PRO B 115 REMARK 465 PRO B 116 REMARK 465 ASN B 117 REMARK 465 VAL B 118 REMARK 465 GLN B 119 REMARK 465 VAL B 120 REMARK 465 PRO B 121 REMARK 465 ASN B 122 REMARK 465 SER B 123 REMARK 465 ALA B 124 REMARK 465 TYR B 125 REMARK 465 LEU B 126 REMARK 465 LEU B 127 REMARK 465 THR B 128 REMARK 465 GLY B 129 REMARK 465 PHE B 130 REMARK 465 PRO B 131 REMARK 465 HIS B 132 REMARK 465 GLU B 133 REMARK 465 ILE B 134 REMARK 465 LEU B 135 REMARK 465 ASP B 136 REMARK 465 PHE B 137 REMARK 465 ARG B 138 REMARK 465 THR B 139 REMARK 465 ALA B 140 REMARK 465 ASP B 141 REMARK 465 GLN B 142 REMARK 465 VAL B 143 REMARK 465 GLU B 144 REMARK 465 ILE B 145 REMARK 465 ILE B 146 REMARK 465 ALA B 147 REMARK 465 PRO B 148 REMARK 465 ASP B 149 REMARK 465 ILE B 150 REMARK 465 LYS B 151 REMARK 465 ASN B 152 REMARK 465 LEU B 153 REMARK 465 ASP B 154 REMARK 465 TYR B 155 REMARK 465 HIS B 156 REMARK 465 PHE B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 465 ASP B 160 REMARK 465 LYS B 161 REMARK 465 LEU B 162 REMARK 465 GLY B 163 REMARK 465 ARG B 164 REMARK 465 LEU B 165 REMARK 465 VAL B 166 REMARK 465 VAL B 167 REMARK 465 MET B 168 REMARK 465 VAL B 169 REMARK 465 TYR B 170 REMARK 465 SER B 171 REMARK 465 PRO B 172 REMARK 465 LEU B 173 REMARK 465 ARG B 174 REMARK 465 SER B 175 REMARK 465 THR B 176 REMARK 465 ALA B 177 REMARK 465 THR B 178 REMARK 465 ASP B 179 REMARK 465 PHE B 180 REMARK 465 GLU B 181 REMARK 465 ILE B 182 REMARK 465 GLU B 183 REMARK 465 ILE B 184 REMARK 465 LYS B 185 REMARK 465 LEU B 186 REMARK 465 LEU B 187 REMARK 465 SER B 188 REMARK 465 ALA B 189 REMARK 465 PRO B 190 REMARK 465 LEU B 191 REMARK 465 PRO B 192 REMARK 465 ASP B 193 REMARK 465 PHE B 194 REMARK 465 LYS B 195 REMARK 465 PHE B 196 REMARK 465 THR B 197 REMARK 465 MET B 198 REMARK 465 LEU B 199 REMARK 465 VAL B 200 REMARK 465 PRO B 201 REMARK 465 PRO B 202 REMARK 465 VAL B 203 REMARK 465 GLN B 204 REMARK 465 ASN B 205 REMARK 465 ASN B 206 REMARK 465 ALA B 207 REMARK 465 LEU B 208 REMARK 465 THR B 494 REMARK 465 GLY B 495 REMARK 465 THR B 496 REMARK 465 ASN B 497 REMARK 465 THR B 498 REMARK 465 THR B 517 REMARK 465 PHE B 518 REMARK 465 VAL B 519 REMARK 465 ILE B 520 REMARK 465 GLY B 521 REMARK 465 ASN B 522 REMARK 465 VAL B 523 REMARK 465 VAL B 524 REMARK 465 ASP B 525 REMARK 465 LEU B 526 REMARK 465 SER B 527 REMARK 465 SER B 528 REMARK 465 SER B 529 REMARK 465 ARG B 530 REMARK 465 SER B 531 REMARK 465 LEU B 532 REMARK 465 THR B 533 REMARK 465 PHE B 534 REMARK 465 HIS B 535 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 365 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 365 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ASP A 351 OD1 ASP A 357 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 226 76.98 -159.87 REMARK 500 ASN A 244 31.49 -97.82 REMARK 500 LYS A 317 71.07 48.39 REMARK 500 HIS A 323 123.04 -39.57 REMARK 500 CYS A 326 -122.79 52.11 REMARK 500 LEU A 356 11.55 -141.40 REMARK 500 ASN A 437 30.58 -92.33 REMARK 500 TYR A 473 -121.94 54.44 REMARK 500 ASN A 492 -142.34 54.37 REMARK 500 SER B 226 80.03 -161.52 REMARK 500 LEU B 267 30.00 -97.63 REMARK 500 SER B 388 32.92 -94.38 REMARK 500 SER B 433 -141.75 55.25 REMARK 500 LEU B 472 -61.02 -94.45 REMARK 500 ALA B 491 -96.07 -109.70 REMARK 500 ASN B 492 -159.70 -165.79 REMARK 500 ASN B 511 -60.42 -99.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 321 0.29 SIDE CHAIN REMARK 500 ARG B 509 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62320 RELATED DB: EMDB REMARK 900 STRUCTURAL BASIS FOR THE RECOGNITION OF BLOOD GROUP TRISACCHARIDES REMARK 900 BY TULANE VIRUS DBREF1 9KGI A 1 535 UNP A0A067YMZ3_9CALI DBREF2 9KGI A A0A067YMZ3 1 535 DBREF1 9KGI B 1 535 UNP A0A067YMZ3_9CALI DBREF2 9KGI B A0A067YMZ3 1 535 SEQRES 1 A 535 MET GLU SER THR THR GLU VAL THR GLY ALA THR GLY VAL SEQRES 2 A 535 VAL THR ASN VAL ALA ALA ALA PRO LEU PRO GLU ALA THR SEQRES 3 A 535 SER SER MET SER LEU ALA PRO THR VAL ASN SER ILE ASP SEQRES 4 A 535 PRO TRP ILE PHE LEU ASN PRO THR GLU VAL PRO GLY GLY SEQRES 5 A 535 THR PHE THR VAL ALA SER ASN THR GLN PRO GLY THR MET SEQRES 6 A 535 LEU LEU ASP ILE GLU ILE SER PRO GLU LEU ASN ILE PHE SEQRES 7 A 535 THR ALA HIS MET PHE ARG MET TYR ALA GLY TRP SER GLY SEQRES 8 A 535 GLY PHE ALA ILE LYS LEU LEU VAL ALA GLY ASN ALA PHE SEQRES 9 A 535 SER ALA GLY LYS LEU ILE VAL ALA ILE ILE PRO PRO ASN SEQRES 10 A 535 VAL GLN VAL PRO ASN SER ALA TYR LEU LEU THR GLY PHE SEQRES 11 A 535 PRO HIS GLU ILE LEU ASP PHE ARG THR ALA ASP GLN VAL SEQRES 12 A 535 GLU ILE ILE ALA PRO ASP ILE LYS ASN LEU ASP TYR HIS SEQRES 13 A 535 PHE ARG GLY ASP LYS LEU GLY ARG LEU VAL VAL MET VAL SEQRES 14 A 535 TYR SER PRO LEU ARG SER THR ALA THR ASP PHE GLU ILE SEQRES 15 A 535 GLU ILE LYS LEU LEU SER ALA PRO LEU PRO ASP PHE LYS SEQRES 16 A 535 PHE THR MET LEU VAL PRO PRO VAL GLN ASN ASN ALA LEU SEQRES 17 A 535 PRO ILE TRP GLN ILE PRO PRO THR PRO PRO GLY ALA MET SEQRES 18 A 535 VAL ASN PRO ARG SER PRO LEU THR PRO VAL VAL ASP LEU SEQRES 19 A 535 TYR ILE ASN SER SER TRP THR THR CYS ASN HIS GLN LEU SEQRES 20 A 535 GLY ARG TYR THR ILE ASP GLY GLY ALA ILE GLY ASN SER SEQRES 21 A 535 THR PHE ASN PRO SER GLY LEU TRP THR GLY THR PHE THR SEQRES 22 A 535 ALA GLU SER GLY SER VAL SER GLY GLN THR ASN TRP ARG SEQRES 23 A 535 ILE ALA MET LEU ASP ASN PRO TYR ASN PRO THR SER ASP SEQRES 24 A 535 PRO THR LEU PRO PRO VAL PRO ARG GLY PHE CYS ASP TRP SEQRES 25 A 535 GLY SER GLY VAL LYS SER GLY ALA ARG GLN HIS LEU VAL SEQRES 26 A 535 CYS PHE THR GLY VAL GLU THR ASP ASN GLY GLU GLY TYR SEQRES 27 A 535 LYS ASP VAL ASP ALA HIS MET TRP ASP TYR GLY ASP ASP SEQRES 28 A 535 ALA THR ILE GLY LEU ASP ASN THR TYR GLN ARG GLN ILE SEQRES 29 A 535 TYR ILE SER ASP PRO THR ALA LEU ASP SER GLY LYS ARG SEQRES 30 A 535 TYR ILE ILE ILE PRO MET GLY ALA SER GLY SER ALA THR SEQRES 31 A 535 ASP ASP THR LEU GLN ILE SER PRO ASN CYS TYR GLY SER SEQRES 32 A 535 TRP ASP TYR ALA PRO THR ILE ALA PRO PRO LEU GLY GLU SEQRES 33 A 535 GLN ILE VAL TRP PHE ARG SER TYR LEU PRO ALA SER SER SEQRES 34 A 535 THR SER ALA SER SER GLY VAL ASN SER VAL SER ALA HIS SEQRES 35 A 535 ILE SER SER LEU MET SER PRO ASP LEU ILE ARG SER ALA SEQRES 36 A 535 TYR VAL SER GLY PHE PRO GLU GLY LYS ALA ALA LEU LEU SEQRES 37 A 535 ASP TYR VAL LEU TYR GLY GLY SER VAL VAL GLU GLN PHE SEQRES 38 A 535 LYS MET TYR ARG GLU GLY TYR LEU THR ALA ASN ALA THR SEQRES 39 A 535 GLY THR ASN THR GLY PHE ILE ILE PRO PRO ASP GLY TYR SEQRES 40 A 535 PHE ARG PHE ASN SER TRP VAL SER PRO THR PHE VAL ILE SEQRES 41 A 535 GLY ASN VAL VAL ASP LEU SER SER SER ARG SER LEU THR SEQRES 42 A 535 PHE HIS SEQRES 1 B 535 MET GLU SER THR THR GLU VAL THR GLY ALA THR GLY VAL SEQRES 2 B 535 VAL THR ASN VAL ALA ALA ALA PRO LEU PRO GLU ALA THR SEQRES 3 B 535 SER SER MET SER LEU ALA PRO THR VAL ASN SER ILE ASP SEQRES 4 B 535 PRO TRP ILE PHE LEU ASN PRO THR GLU VAL PRO GLY GLY SEQRES 5 B 535 THR PHE THR VAL ALA SER ASN THR GLN PRO GLY THR MET SEQRES 6 B 535 LEU LEU ASP ILE GLU ILE SER PRO GLU LEU ASN ILE PHE SEQRES 7 B 535 THR ALA HIS MET PHE ARG MET TYR ALA GLY TRP SER GLY SEQRES 8 B 535 GLY PHE ALA ILE LYS LEU LEU VAL ALA GLY ASN ALA PHE SEQRES 9 B 535 SER ALA GLY LYS LEU ILE VAL ALA ILE ILE PRO PRO ASN SEQRES 10 B 535 VAL GLN VAL PRO ASN SER ALA TYR LEU LEU THR GLY PHE SEQRES 11 B 535 PRO HIS GLU ILE LEU ASP PHE ARG THR ALA ASP GLN VAL SEQRES 12 B 535 GLU ILE ILE ALA PRO ASP ILE LYS ASN LEU ASP TYR HIS SEQRES 13 B 535 PHE ARG GLY ASP LYS LEU GLY ARG LEU VAL VAL MET VAL SEQRES 14 B 535 TYR SER PRO LEU ARG SER THR ALA THR ASP PHE GLU ILE SEQRES 15 B 535 GLU ILE LYS LEU LEU SER ALA PRO LEU PRO ASP PHE LYS SEQRES 16 B 535 PHE THR MET LEU VAL PRO PRO VAL GLN ASN ASN ALA LEU SEQRES 17 B 535 PRO ILE TRP GLN ILE PRO PRO THR PRO PRO GLY ALA MET SEQRES 18 B 535 VAL ASN PRO ARG SER PRO LEU THR PRO VAL VAL ASP LEU SEQRES 19 B 535 TYR ILE ASN SER SER TRP THR THR CYS ASN HIS GLN LEU SEQRES 20 B 535 GLY ARG TYR THR ILE ASP GLY GLY ALA ILE GLY ASN SER SEQRES 21 B 535 THR PHE ASN PRO SER GLY LEU TRP THR GLY THR PHE THR SEQRES 22 B 535 ALA GLU SER GLY SER VAL SER GLY GLN THR ASN TRP ARG SEQRES 23 B 535 ILE ALA MET LEU ASP ASN PRO TYR ASN PRO THR SER ASP SEQRES 24 B 535 PRO THR LEU PRO PRO VAL PRO ARG GLY PHE CYS ASP TRP SEQRES 25 B 535 GLY SER GLY VAL LYS SER GLY ALA ARG GLN HIS LEU VAL SEQRES 26 B 535 CYS PHE THR GLY VAL GLU THR ASP ASN GLY GLU GLY TYR SEQRES 27 B 535 LYS ASP VAL ASP ALA HIS MET TRP ASP TYR GLY ASP ASP SEQRES 28 B 535 ALA THR ILE GLY LEU ASP ASN THR TYR GLN ARG GLN ILE SEQRES 29 B 535 TYR ILE SER ASP PRO THR ALA LEU ASP SER GLY LYS ARG SEQRES 30 B 535 TYR ILE ILE ILE PRO MET GLY ALA SER GLY SER ALA THR SEQRES 31 B 535 ASP ASP THR LEU GLN ILE SER PRO ASN CYS TYR GLY SER SEQRES 32 B 535 TRP ASP TYR ALA PRO THR ILE ALA PRO PRO LEU GLY GLU SEQRES 33 B 535 GLN ILE VAL TRP PHE ARG SER TYR LEU PRO ALA SER SER SEQRES 34 B 535 THR SER ALA SER SER GLY VAL ASN SER VAL SER ALA HIS SEQRES 35 B 535 ILE SER SER LEU MET SER PRO ASP LEU ILE ARG SER ALA SEQRES 36 B 535 TYR VAL SER GLY PHE PRO GLU GLY LYS ALA ALA LEU LEU SEQRES 37 B 535 ASP TYR VAL LEU TYR GLY GLY SER VAL VAL GLU GLN PHE SEQRES 38 B 535 LYS MET TYR ARG GLU GLY TYR LEU THR ALA ASN ALA THR SEQRES 39 B 535 GLY THR ASN THR GLY PHE ILE ILE PRO PRO ASP GLY TYR SEQRES 40 B 535 PHE ARG PHE ASN SER TRP VAL SER PRO THR PHE VAL ILE SEQRES 41 B 535 GLY ASN VAL VAL ASP LEU SER SER SER ARG SER LEU THR SEQRES 42 B 535 PHE HIS HET GLA C 1 12 HET FUC C 2 10 HET GLA C 3 11 HET GLA D 1 12 HET FUC D 2 10 HET GLA D 3 11 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 GLA 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) HELIX 1 AA1 PRO A 217 MET A 221 5 5 HELIX 2 AA2 THR A 390 ILE A 396 1 7 HELIX 3 AA3 SER A 448 ALA A 455 1 8 HELIX 4 AA4 PRO B 217 MET B 221 5 5 HELIX 5 AA5 THR B 353 ASP B 357 5 5 HELIX 6 AA6 THR B 390 ILE B 396 1 7 HELIX 7 AA7 SER B 448 SER B 454 1 7 HELIX 8 AA8 ALA B 455 VAL B 457 5 3 SHEET 1 AA1 2 LEU A 234 TYR A 235 0 SHEET 2 AA1 2 ILE A 501 ILE A 502 -1 O ILE A 502 N LEU A 234 SHEET 1 AA2 2 TYR A 250 THR A 251 0 SHEET 2 AA2 2 GLY A 255 ALA A 256 -1 O GLY A 255 N THR A 251 SHEET 1 AA3 8 ALA B 427 SER B 429 0 SHEET 2 AA3 8 GLY A 337 TYR A 348 1 N TYR A 338 O ALA B 427 SHEET 3 AA3 8 GLN A 363 SER A 367 -1 O SER A 367 N MET A 345 SHEET 4 AA3 8 TRP A 285 LEU A 290 -1 N ALA A 288 O ILE A 364 SHEET 5 AA3 8 GLY A 270 SER A 278 -1 N THR A 273 O MET A 289 SHEET 6 AA3 8 ARG A 377 ILE A 381 -1 O TYR A 378 N PHE A 272 SHEET 7 AA3 8 LEU A 324 GLU A 331 1 N GLY A 329 O ILE A 379 SHEET 8 AA3 8 GLY A 337 TYR A 348 -1 O LYS A 339 N VAL A 330 SHEET 1 AA4 2 ALA A 385 SER A 386 0 SHEET 2 AA4 2 SER A 438 VAL A 439 -1 O VAL A 439 N ALA A 385 SHEET 1 AA5 2 SER A 423 LEU A 425 0 SHEET 2 AA5 2 ALA A 441 ILE A 443 -1 O ILE A 443 N SER A 423 SHEET 1 AA6 5 ALA A 427 SER A 429 0 SHEET 2 AA6 5 GLY B 337 TYR B 348 1 O TYR B 338 N ALA A 427 SHEET 3 AA6 5 HIS B 323 GLU B 331 -1 N VAL B 330 O LYS B 339 SHEET 4 AA6 5 ARG B 377 SER B 386 -1 O ILE B 379 N GLY B 329 SHEET 5 AA6 5 SER B 438 VAL B 439 -1 O VAL B 439 N ALA B 385 SHEET 1 AA7 7 ALA A 427 SER A 429 0 SHEET 2 AA7 7 GLY B 337 TYR B 348 1 O TYR B 338 N ALA A 427 SHEET 3 AA7 7 GLN B 363 SER B 367 -1 O SER B 367 N MET B 345 SHEET 4 AA7 7 TRP B 285 LEU B 290 -1 N ALA B 288 O ILE B 364 SHEET 5 AA7 7 GLY B 270 SER B 278 -1 N THR B 273 O MET B 289 SHEET 6 AA7 7 ARG B 377 SER B 386 -1 O TYR B 378 N PHE B 272 SHEET 7 AA7 7 SER B 438 VAL B 439 -1 O VAL B 439 N ALA B 385 SHEET 1 AA8 4 LEU A 489 THR A 490 0 SHEET 2 AA8 4 VAL A 477 MET A 483 -1 N LYS A 482 O THR A 490 SHEET 3 AA8 4 ALA A 465 LEU A 472 -1 N TYR A 470 O GLU A 479 SHEET 4 AA8 4 GLY A 506 VAL A 514 -1 O ARG A 509 N ASP A 469 SHEET 1 AA9 2 SER B 423 LEU B 425 0 SHEET 2 AA9 2 ALA B 441 ILE B 443 -1 O ALA B 441 N LEU B 425 SHEET 1 AB1 4 LEU B 489 THR B 490 0 SHEET 2 AB1 4 VAL B 478 MET B 483 -1 N LYS B 482 O THR B 490 SHEET 3 AB1 4 ALA B 465 VAL B 471 -1 N LEU B 468 O PHE B 481 SHEET 4 AB1 4 TYR B 507 VAL B 514 -1 O ARG B 509 N ASP B 469 LINK O2 GLA C 1 C1 FUC C 2 1555 1555 1.43 LINK O3 GLA C 1 C1 GLA C 3 1555 1555 1.43 LINK O2 GLA D 1 C1 FUC D 2 1555 1555 1.44 LINK O3 GLA D 1 C1 GLA D 3 1555 1555 1.43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 4623 4624 4629 4633 CONECT 4624 4623 4625 4630 CONECT 4625 4624 4626 4631 CONECT 4626 4625 4627 4632 CONECT 4627 4626 4628 4633 CONECT 4628 4627 4634 CONECT 4629 4623 CONECT 4630 4624 4635 CONECT 4631 4625 4645 CONECT 4632 4626 CONECT 4633 4623 4627 CONECT 4634 4628 CONECT 4635 4630 4636 4644 CONECT 4636 4635 4637 4641 CONECT 4637 4636 4638 4642 CONECT 4638 4637 4639 4643 CONECT 4639 4638 4640 4644 CONECT 4640 4639 CONECT 4641 4636 CONECT 4642 4637 CONECT 4643 4638 CONECT 4644 4635 4639 CONECT 4645 4631 4646 4654 CONECT 4646 4645 4647 4651 CONECT 4647 4646 4648 4652 CONECT 4648 4647 4649 4653 CONECT 4649 4648 4650 4654 CONECT 4650 4649 4655 CONECT 4651 4646 CONECT 4652 4647 CONECT 4653 4648 CONECT 4654 4645 4649 CONECT 4655 4650 CONECT 4656 4657 4662 4666 CONECT 4657 4656 4658 4663 CONECT 4658 4657 4659 4664 CONECT 4659 4658 4660 4665 CONECT 4660 4659 4661 4666 CONECT 4661 4660 4667 CONECT 4662 4656 CONECT 4663 4657 4668 CONECT 4664 4658 4678 CONECT 4665 4659 CONECT 4666 4656 4660 CONECT 4667 4661 CONECT 4668 4663 4669 4677 CONECT 4669 4668 4670 4674 CONECT 4670 4669 4671 4675 CONECT 4671 4670 4672 4676 CONECT 4672 4671 4673 4677 CONECT 4673 4672 CONECT 4674 4669 CONECT 4675 4670 CONECT 4676 4671 CONECT 4677 4668 4672 CONECT 4678 4664 4679 4687 CONECT 4679 4678 4680 4684 CONECT 4680 4679 4681 4685 CONECT 4681 4680 4682 4686 CONECT 4682 4681 4683 4687 CONECT 4683 4682 4688 CONECT 4684 4679 CONECT 4685 4680 CONECT 4686 4681 CONECT 4687 4678 4682 CONECT 4688 4683 MASTER 638 0 6 8 38 0 0 6 4686 2 66 84 END