data_9KK3 # _entry.id 9KK3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9KK3 pdb_00009kk3 10.2210/pdb9kk3/pdb WWPDB D_1300053535 ? ? BMRB 36712 ? 10.13018/BMR36712 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9KK3 _pdbx_database_status.recvd_initial_deposition_date 2024-11-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of kappa-conotoxin RIIIK' _pdbx_database_related.db_id 36712 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email olivera@biology.utah.edu _pdbx_contact_author.name_first Olivera _pdbx_contact_author.name_last Baldomero _pdbx_contact_author.name_mi M. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4556-1410 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lushpa, V.A.' 1 0000-0002-1788-1153 'Vassilevski, A.A.' 2 0000-0002-1359-0076 'Bocharov, E.V.' 3 0000-0002-3635-1609 'Olivera, B.M.' 4 0000-0003-4556-1410 'Rivier, J.' 5 ? 'Raghuraman, S.' 6 0000-0001-5625-4454 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Solution structure of kappa-conotoxin RIIIK' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lushpa, V.A.' 1 0000-0002-1788-1153 primary 'Vassilevski, A.A.' 2 0000-0002-1359-0076 primary 'Bocharov, E.V.' 3 0000-0002-3635-1609 primary 'Olivera, B.M.' 4 0000-0003-4556-1410 primary 'Rivier, J.' 5 ? primary 'Raghuraman, S.' 6 0000-0001-5625-4454 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Kappa-conotoxin RIIIK' _entity.formula_weight 2657.211 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Kappa-M-RIIIK,Conotoxin R3.1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'L(HYP)SCCSLNLRLC(HYP)V(HYP)ACKRN(HYP)CCT(NH2)' _entity_poly.pdbx_seq_one_letter_code_can LPSCCSLNLRLCPVPACKRNPCCTX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 HYP n 1 3 SER n 1 4 CYS n 1 5 CYS n 1 6 SER n 1 7 LEU n 1 8 ASN n 1 9 LEU n 1 10 ARG n 1 11 LEU n 1 12 CYS n 1 13 HYP n 1 14 VAL n 1 15 HYP n 1 16 ALA n 1 17 CYS n 1 18 LYS n 1 19 ARG n 1 20 ASN n 1 21 HYP n 1 22 CYS n 1 23 CYS n 1 24 THR n 1 25 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific 'Conus radiatus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 61198 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 HYP 2 2 2 HYP HYP A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 HYP 13 13 13 HYP HYP A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 HYP 15 15 15 HYP HYP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 HYP 21 21 21 HYP HYP A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 NH2 25 25 25 NH2 NH2 A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 HYP ? ? HYP ? ? 'SUBJECT OF INVESTIGATION' ? 2 NH2 ? ? NH2 ? ? 'SUBJECT OF INVESTIGATION' ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9KK3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9KK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9KK3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _database_PDB_matrix.entry_id 9KK3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 9KK3 _struct.title 'Solution structure of kappa-conotoxin RIIIK' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9KK3 _struct_keywords.text 'cappa-conotoxin, protein, TOXIN' _struct_keywords.pdbx_keywords TOXIN # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CM3K_CONRA _struct_ref.pdbx_db_accession P69769 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LPSCCSLNLRLCPVPACKRNPCCT _struct_ref.pdbx_align_begin 51 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9KK3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P69769 _struct_ref_seq.db_align_beg 51 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 74 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9KK3 _struct_ref_seq_dif.mon_id NH2 _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 25 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P69769 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details amidation _struct_ref_seq_dif.pdbx_auth_seq_num 25 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 14 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 18 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 14 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 18 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 17 SG ? ? A CYS 4 A CYS 17 1_555 ? ? ? ? ? ? ? 1.931 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 5 A CYS 22 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 23 SG ? ? A CYS 12 A CYS 23 1_555 ? ? ? ? ? ? ? 1.993 ? ? covale1 covale both ? A LEU 1 C ? ? ? 1_555 A HYP 2 N ? ? A LEU 1 A HYP 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale2 covale both ? A HYP 2 C ? ? ? 1_555 A SER 3 N ? ? A HYP 2 A SER 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A CYS 12 C ? ? ? 1_555 A HYP 13 N ? ? A CYS 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? A HYP 13 C ? ? ? 1_555 A VAL 14 N ? ? A HYP 13 A VAL 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A VAL 14 C ? ? ? 1_555 A HYP 15 N ? ? A VAL 14 A HYP 15 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale6 covale both ? A HYP 15 C ? ? ? 1_555 A ALA 16 N ? ? A HYP 15 A ALA 16 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A ASN 20 C ? ? ? 1_555 A HYP 21 N ? ? A ASN 20 A HYP 21 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? A HYP 21 C ? ? ? 1_555 A CYS 22 N ? ? A HYP 21 A CYS 22 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A THR 24 C ? ? ? 1_555 A NH2 25 N ? ? A THR 24 A NH2 25 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 HYP A 2 ? . . . . HYP A 2 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 2 HYP A 13 ? . . . . HYP A 13 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 3 HYP A 15 ? . . . . HYP A 15 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 4 HYP A 21 ? . . . . HYP A 21 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 5 NH2 A 25 ? THR A 24 ? NH2 A 25 ? 1_555 THR A 24 ? 1_555 . . THR 7 NH2 None 'Terminal amidation' 6 CYS A 4 ? CYS A 17 ? CYS A 4 ? 1_555 CYS A 17 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 5 ? CYS A 22 ? CYS A 5 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 12 ? CYS A 23 ? CYS A 12 ? 1_555 CYS A 23 ? 1_555 SG SG . . . None 'Disulfide bridge' # _pdbx_entry_details.entry_id 9KK3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 5 ? ? -93.45 30.30 2 1 LEU A 7 ? ? -93.68 30.59 3 1 ASN A 8 ? ? -165.49 67.05 4 1 LEU A 9 ? ? -86.29 47.56 5 1 CYS A 12 ? ? -154.98 87.26 6 2 CYS A 5 ? ? -93.25 31.58 7 2 LEU A 7 ? ? -93.78 32.07 8 2 ASN A 8 ? ? -165.50 64.76 9 2 LEU A 9 ? ? -86.04 49.20 10 2 CYS A 12 ? ? -153.33 85.71 11 3 SER A 3 ? ? -94.67 37.11 12 3 ASN A 8 ? ? -165.64 66.39 13 3 LEU A 9 ? ? -85.35 48.86 14 3 CYS A 12 ? ? -160.58 84.78 15 4 SER A 3 ? ? -103.15 74.99 16 4 CYS A 5 ? ? -93.45 31.39 17 4 LEU A 7 ? ? -93.72 31.45 18 4 ASN A 8 ? ? -165.65 66.20 19 4 LEU A 9 ? ? -87.24 47.44 20 4 CYS A 12 ? ? -153.64 87.00 21 5 SER A 3 ? ? -116.82 77.02 22 5 ASN A 8 ? ? -165.52 66.55 23 5 LEU A 9 ? ? -85.56 49.39 24 5 ARG A 10 ? ? -120.03 -53.71 25 5 CYS A 12 ? ? -160.58 85.29 26 6 SER A 3 ? ? -100.04 47.81 27 6 LEU A 7 ? ? -94.47 30.62 28 6 ASN A 8 ? ? -166.07 65.50 29 6 LEU A 9 ? ? -86.56 47.82 30 7 HYP A 2 ? ? -55.33 -70.40 31 7 CYS A 5 ? ? -93.52 33.80 32 7 ASN A 8 ? ? -162.54 68.78 33 7 LEU A 9 ? ? -86.56 48.90 34 7 ARG A 10 ? ? -103.93 -62.06 35 7 CYS A 12 ? ? -174.73 76.62 36 8 CYS A 5 ? ? -93.36 30.70 37 8 SER A 6 ? ? -73.74 -73.07 38 8 LEU A 7 ? ? -93.63 31.44 39 8 ASN A 8 ? ? -165.29 68.62 40 8 LEU A 9 ? ? -83.96 49.24 41 8 ARG A 10 ? ? -95.73 -62.22 42 9 CYS A 5 ? ? -93.32 30.57 43 9 LEU A 7 ? ? -93.40 31.38 44 9 ASN A 8 ? ? -165.19 67.06 45 9 LEU A 9 ? ? -86.95 46.59 46 9 CYS A 12 ? ? -153.77 87.28 47 10 CYS A 5 ? ? -94.15 34.37 48 10 ASN A 8 ? ? -166.23 66.49 49 10 ARG A 10 ? ? -148.31 -40.16 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 2 A HYP 2 ? PRO 'modified residue' 2 A HYP 13 A HYP 13 ? PRO 'modified residue' 3 A HYP 15 A HYP 15 ? PRO 'modified residue' 4 A HYP 21 A HYP 21 ? PRO 'modified residue' # _pdbx_nmr_ensemble.entry_id 9KK3 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9KK3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '95 % H2O, 5 % D-99.8% D2O, 0.001 % sodium azide, 95% H2O/5% D2O' '95% H2O/5% D2O' 'natural abundance' solution ? 2 '100 % D-99.8% D2O, 0.001 % sodium azide, 100% D2O' '100% D2O' 'natural abundance' solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 H2O 95 ? % 'natural abundance' 1 D2O 5 ? % D-99.8% 1 'sodium azide' 0.001 ? % 'natural abundance' 2 D2O 100 ? % D-99.8% 2 'sodium azide' 0.001 ? % 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 3.95 _pdbx_nmr_exptl_sample_conditions.ionic_strength Null _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 4 1 2 '2D 1H-1H NOESY' 1 isotropic 5 1 2 '2D 1H-1H TOCSY' 1 isotropic 6 1 2 '2D 1H-13C HSQC aliphatic' 1 isotropic 7 1 2 '2D DQF-COSY' 1 isotropic # _pdbx_nmr_refine.entry_id 9KK3 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA 3.98.13 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA 3.98.13 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' CARA 1.9.1.7 'Keller and Wuthrich' 4 collection TopSpin 3.4 'Bruker Biospin' 5 'peak picking' CARA 1.9.1.7 'Keller and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 CYS N N N N 58 CYS CA C N R 59 CYS C C N N 60 CYS O O N N 61 CYS CB C N N 62 CYS SG S N N 63 CYS OXT O N N 64 CYS H H N N 65 CYS H2 H N N 66 CYS HA H N N 67 CYS HB2 H N N 68 CYS HB3 H N N 69 CYS HG H N N 70 CYS HXT H N N 71 HYP N N N N 72 HYP CA C N S 73 HYP C C N N 74 HYP O O N N 75 HYP CB C N N 76 HYP CG C N R 77 HYP CD C N N 78 HYP OD1 O N N 79 HYP OXT O N N 80 HYP H H N N 81 HYP HA H N N 82 HYP HB2 H N N 83 HYP HB3 H N N 84 HYP HG H N N 85 HYP HD22 H N N 86 HYP HD23 H N N 87 HYP HD1 H N N 88 HYP HXT H N N 89 LEU N N N N 90 LEU CA C N S 91 LEU C C N N 92 LEU O O N N 93 LEU CB C N N 94 LEU CG C N N 95 LEU CD1 C N N 96 LEU CD2 C N N 97 LEU OXT O N N 98 LEU H H N N 99 LEU H2 H N N 100 LEU HA H N N 101 LEU HB2 H N N 102 LEU HB3 H N N 103 LEU HG H N N 104 LEU HD11 H N N 105 LEU HD12 H N N 106 LEU HD13 H N N 107 LEU HD21 H N N 108 LEU HD22 H N N 109 LEU HD23 H N N 110 LEU HXT H N N 111 LYS N N N N 112 LYS CA C N S 113 LYS C C N N 114 LYS O O N N 115 LYS CB C N N 116 LYS CG C N N 117 LYS CD C N N 118 LYS CE C N N 119 LYS NZ N N N 120 LYS OXT O N N 121 LYS H H N N 122 LYS H2 H N N 123 LYS HA H N N 124 LYS HB2 H N N 125 LYS HB3 H N N 126 LYS HG2 H N N 127 LYS HG3 H N N 128 LYS HD2 H N N 129 LYS HD3 H N N 130 LYS HE2 H N N 131 LYS HE3 H N N 132 LYS HZ1 H N N 133 LYS HZ2 H N N 134 LYS HZ3 H N N 135 LYS HXT H N N 136 NH2 N N N N 137 NH2 HN1 H N N 138 NH2 HN2 H N N 139 SER N N N N 140 SER CA C N S 141 SER C C N N 142 SER O O N N 143 SER CB C N N 144 SER OG O N N 145 SER OXT O N N 146 SER H H N N 147 SER H2 H N N 148 SER HA H N N 149 SER HB2 H N N 150 SER HB3 H N N 151 SER HG H N N 152 SER HXT H N N 153 THR N N N N 154 THR CA C N S 155 THR C C N N 156 THR O O N N 157 THR CB C N R 158 THR OG1 O N N 159 THR CG2 C N N 160 THR OXT O N N 161 THR H H N N 162 THR H2 H N N 163 THR HA H N N 164 THR HB H N N 165 THR HG1 H N N 166 THR HG21 H N N 167 THR HG22 H N N 168 THR HG23 H N N 169 THR HXT H N N 170 VAL N N N N 171 VAL CA C N S 172 VAL C C N N 173 VAL O O N N 174 VAL CB C N N 175 VAL CG1 C N N 176 VAL CG2 C N N 177 VAL OXT O N N 178 VAL H H N N 179 VAL H2 H N N 180 VAL HA H N N 181 VAL HB H N N 182 VAL HG11 H N N 183 VAL HG12 H N N 184 VAL HG13 H N N 185 VAL HG21 H N N 186 VAL HG22 H N N 187 VAL HG23 H N N 188 VAL HXT H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 CYS N CA sing N N 55 CYS N H sing N N 56 CYS N H2 sing N N 57 CYS CA C sing N N 58 CYS CA CB sing N N 59 CYS CA HA sing N N 60 CYS C O doub N N 61 CYS C OXT sing N N 62 CYS CB SG sing N N 63 CYS CB HB2 sing N N 64 CYS CB HB3 sing N N 65 CYS SG HG sing N N 66 CYS OXT HXT sing N N 67 HYP N CA sing N N 68 HYP N CD sing N N 69 HYP N H sing N N 70 HYP CA C sing N N 71 HYP CA CB sing N N 72 HYP CA HA sing N N 73 HYP C O doub N N 74 HYP C OXT sing N N 75 HYP CB CG sing N N 76 HYP CB HB2 sing N N 77 HYP CB HB3 sing N N 78 HYP CG CD sing N N 79 HYP CG OD1 sing N N 80 HYP CG HG sing N N 81 HYP CD HD22 sing N N 82 HYP CD HD23 sing N N 83 HYP OD1 HD1 sing N N 84 HYP OXT HXT sing N N 85 LEU N CA sing N N 86 LEU N H sing N N 87 LEU N H2 sing N N 88 LEU CA C sing N N 89 LEU CA CB sing N N 90 LEU CA HA sing N N 91 LEU C O doub N N 92 LEU C OXT sing N N 93 LEU CB CG sing N N 94 LEU CB HB2 sing N N 95 LEU CB HB3 sing N N 96 LEU CG CD1 sing N N 97 LEU CG CD2 sing N N 98 LEU CG HG sing N N 99 LEU CD1 HD11 sing N N 100 LEU CD1 HD12 sing N N 101 LEU CD1 HD13 sing N N 102 LEU CD2 HD21 sing N N 103 LEU CD2 HD22 sing N N 104 LEU CD2 HD23 sing N N 105 LEU OXT HXT sing N N 106 LYS N CA sing N N 107 LYS N H sing N N 108 LYS N H2 sing N N 109 LYS CA C sing N N 110 LYS CA CB sing N N 111 LYS CA HA sing N N 112 LYS C O doub N N 113 LYS C OXT sing N N 114 LYS CB CG sing N N 115 LYS CB HB2 sing N N 116 LYS CB HB3 sing N N 117 LYS CG CD sing N N 118 LYS CG HG2 sing N N 119 LYS CG HG3 sing N N 120 LYS CD CE sing N N 121 LYS CD HD2 sing N N 122 LYS CD HD3 sing N N 123 LYS CE NZ sing N N 124 LYS CE HE2 sing N N 125 LYS CE HE3 sing N N 126 LYS NZ HZ1 sing N N 127 LYS NZ HZ2 sing N N 128 LYS NZ HZ3 sing N N 129 LYS OXT HXT sing N N 130 NH2 N HN1 sing N N 131 NH2 N HN2 sing N N 132 SER N CA sing N N 133 SER N H sing N N 134 SER N H2 sing N N 135 SER CA C sing N N 136 SER CA CB sing N N 137 SER CA HA sing N N 138 SER C O doub N N 139 SER C OXT sing N N 140 SER CB OG sing N N 141 SER CB HB2 sing N N 142 SER CB HB3 sing N N 143 SER OG HG sing N N 144 SER OXT HXT sing N N 145 THR N CA sing N N 146 THR N H sing N N 147 THR N H2 sing N N 148 THR CA C sing N N 149 THR CA CB sing N N 150 THR CA HA sing N N 151 THR C O doub N N 152 THR C OXT sing N N 153 THR CB OG1 sing N N 154 THR CB CG2 sing N N 155 THR CB HB sing N N 156 THR OG1 HG1 sing N N 157 THR CG2 HG21 sing N N 158 THR CG2 HG22 sing N N 159 THR CG2 HG23 sing N N 160 THR OXT HXT sing N N 161 VAL N CA sing N N 162 VAL N H sing N N 163 VAL N H2 sing N N 164 VAL CA C sing N N 165 VAL CA CB sing N N 166 VAL CA HA sing N N 167 VAL C O doub N N 168 VAL C OXT sing N N 169 VAL CB CG1 sing N N 170 VAL CB CG2 sing N N 171 VAL CB HB sing N N 172 VAL CG1 HG11 sing N N 173 VAL CG1 HG12 sing N N 174 VAL CG1 HG13 sing N N 175 VAL CG2 HG21 sing N N 176 VAL CG2 HG22 sing N N 177 VAL CG2 HG23 sing N N 178 VAL OXT HXT sing N N 179 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 9KK3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #