HEADER MEMBRANE PROTEIN 19-NOV-24 9KO2 TITLE A CRYO_EM STRUCTURE OF CCR7 COMPLEX WITH CCL19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN; COMPND 5 EC: 3.6.5.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 9 BETA-1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: C-C MOTIF CHEMOKINE 19; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: BETA-CHEMOKINE EXODUS-3,CK BETA-11,EPSTEIN-BARR VIRUS- COMPND 17 INDUCED MOLECULE 1 LIGAND CHEMOKINE,EBI1 LIGAND CHEMOKINE,ELC, COMPND 18 MACROPHAGE INFLAMMATORY PROTEIN 3 BETA,MIP-3-BETA,SMALL-INDUCIBLE COMPND 19 CYTOKINE A19; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: C-C CHEMOKINE RECEPTOR TYPE 7; COMPND 23 CHAIN: R; COMPND 24 SYNONYM: C-C CKR-7,CC-CKR-7,CCR-7,BLR2,CDW197,EPSTEIN-BARR VIRUS- COMPND 25 INDUCED G-PROTEIN COUPLED RECEPTOR 1,EBI1,EBV-INDUCED G-PROTEIN COMPND 26 COUPLED RECEPTOR 1,MIP-3 BETA RECEPTOR; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNAI1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GNB1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CCL19, ELC, MIP3B, SCYA19; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: CCR7, CMKBR7, EBI1, EVI1; SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, CCR7, CCL19, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Q.YUAN,J.DUAN,Y.CAO REVDAT 1 26-NOV-25 9KO2 0 JRNL AUTH Q.YUAN,J.DUAN,Y.CAO JRNL TITL A CRYO_EM STRUCTURE OF CCR7 COMPLEX WITH CCL19 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.980 REMARK 3 NUMBER OF PARTICLES : 178837 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053944. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : A CRYO_EM STRUCTURE OF CCR7 REMARK 245 COMPLEX WITH CCL19 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.04 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 8000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 18000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 54 REMARK 465 ILE A 55 REMARK 465 ILE A 56 REMARK 465 HIS A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 TYR A 61 REMARK 465 SER A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 CYS A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 TYR A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 VAL A 72 REMARK 465 VAL A 73 REMARK 465 TYR A 74 REMARK 465 SER A 75 REMARK 465 ASN A 76 REMARK 465 THR A 77 REMARK 465 ILE A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 ILE A 81 REMARK 465 ILE A 82 REMARK 465 ALA A 83 REMARK 465 ILE A 84 REMARK 465 ILE A 85 REMARK 465 ARG A 86 REMARK 465 ALA A 87 REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 ASP A 103 REMARK 465 ALA A 104 REMARK 465 ARG A 105 REMARK 465 GLN A 106 REMARK 465 LEU A 107 REMARK 465 PHE A 108 REMARK 465 VAL A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 MET A 119 REMARK 465 THR A 120 REMARK 465 ALA A 121 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 GLY A 125 REMARK 465 VAL A 126 REMARK 465 ILE A 127 REMARK 465 LYS A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 TRP A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 VAL A 136 REMARK 465 GLN A 137 REMARK 465 ALA A 138 REMARK 465 CYS A 139 REMARK 465 PHE A 140 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 TYR A 146 REMARK 465 GLN A 147 REMARK 465 LEU A 148 REMARK 465 ASN A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 TYR A 154 REMARK 465 TYR A 155 REMARK 465 LEU A 156 REMARK 465 ASN A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ALA A 163 REMARK 465 GLN A 164 REMARK 465 PRO A 165 REMARK 465 ASN A 166 REMARK 465 TYR A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 THR A 170 REMARK 465 GLN A 171 REMARK 465 GLN A 172 REMARK 465 ASP A 173 REMARK 465 VAL A 174 REMARK 465 LEU A 175 REMARK 465 ARG A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 LYS A 180 REMARK 465 THR A 181 REMARK 465 LEU A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 MET A 240 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LEU B -1 REMARK 465 LEU B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 ARG B 8 REMARK 465 GLN B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 GLN B 13 REMARK 465 LEU B 14 REMARK 465 LYS B 15 REMARK 465 ASN B 16 REMARK 465 GLN B 17 REMARK 465 ILE B 18 REMARK 465 ARG B 19 REMARK 465 ASP B 20 REMARK 465 ALA B 21 REMARK 465 ARG B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 CYS B 25 REMARK 465 ALA B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 THR B 29 REMARK 465 LEU B 30 REMARK 465 SER B 31 REMARK 465 GLN B 32 REMARK 465 ILE B 33 REMARK 465 THR B 34 REMARK 465 ASN B 35 REMARK 465 ASN B 36 REMARK 465 GLY B 341 REMARK 465 SER B 342 REMARK 465 SER B 343 REMARK 465 GLY B 344 REMARK 465 GLY B 345 REMARK 465 GLY B 346 REMARK 465 GLY B 347 REMARK 465 SER B 348 REMARK 465 GLY B 349 REMARK 465 GLY B 350 REMARK 465 GLY B 351 REMARK 465 GLY B 352 REMARK 465 SER B 353 REMARK 465 SER B 354 REMARK 465 GLY B 355 REMARK 465 VAL B 356 REMARK 465 SER B 357 REMARK 465 GLY B 358 REMARK 465 TRP B 359 REMARK 465 ARG B 360 REMARK 465 LEU B 361 REMARK 465 PHE B 362 REMARK 465 LYS B 363 REMARK 465 LYS B 364 REMARK 465 ILE B 365 REMARK 465 SER B 366 REMARK 465 GLN R 25 REMARK 465 ASP R 26 REMARK 465 GLU R 27 REMARK 465 VAL R 28 REMARK 465 THR R 29 REMARK 465 ASP R 30 REMARK 465 ASP R 31 REMARK 465 TYR R 32 REMARK 465 ILE R 33 REMARK 465 GLY R 34 REMARK 465 ASP R 35 REMARK 465 ASN R 36 REMARK 465 THR R 37 REMARK 465 THR R 38 REMARK 465 VAL R 39 REMARK 465 ASP R 40 REMARK 465 TYR R 41 REMARK 465 ASN R 292 REMARK 465 ILE R 293 REMARK 465 THR R 294 REMARK 465 SER R 295 REMARK 465 CYS R 346 REMARK 465 LEU R 347 REMARK 465 SER R 348 REMARK 465 GLN R 349 REMARK 465 GLU R 350 REMARK 465 GLN R 351 REMARK 465 LEU R 352 REMARK 465 ARG R 353 REMARK 465 GLN R 354 REMARK 465 TRP R 355 REMARK 465 SER R 356 REMARK 465 SER R 357 REMARK 465 CYS R 358 REMARK 465 ARG R 359 REMARK 465 HIS R 360 REMARK 465 ILE R 361 REMARK 465 ARG R 362 REMARK 465 ARG R 363 REMARK 465 SER R 364 REMARK 465 SER R 365 REMARK 465 MET R 366 REMARK 465 SER R 367 REMARK 465 VAL R 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 ASN A 311 CG OD1 ND2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 ASP A 315 CG OD1 OD2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 THR A 329 OG1 CG2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 ASP B 153 CG OD1 OD2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 MET B 217 CG SD CE REMARK 470 THR B 223 OG1 CG2 REMARK 470 HIS B 225 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 ASP B 267 CG OD1 OD2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 ASP B 312 CG OD1 OD2 REMARK 470 LYS C 15 CG CD CE NZ REMARK 470 TYR C 20 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 23 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 24 CG OD1 ND2 REMARK 470 PHE C 25 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS C 26 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 28 CG CD1 CD2 REMARK 470 LEU C 29 CG CD1 CD2 REMARK 470 ILE C 30 CG1 CG2 CD1 REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ASP C 32 CG OD1 OD2 REMARK 470 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 GLN C 55 CG CD OE1 NE2 REMARK 470 GLU C 59 CG CD OE1 OE2 REMARK 470 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 63 CG CD OE1 NE2 REMARK 470 ARG C 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 65 CG CD1 CD2 REMARK 470 GLN C 66 CG CD OE1 NE2 REMARK 470 ARG C 67 CG CD NE CZ NH1 NH2 REMARK 470 THR C 68 OG1 CG2 REMARK 470 TRP R 59 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP R 59 CZ3 CH2 REMARK 470 MET R 64 CG SD CE REMARK 470 ARG R 88 CG CD NE CZ NH1 NH2 REMARK 470 VAL R 162 CG1 CG2 REMARK 470 ARG R 168 CG CD NE CZ NH1 NH2 REMARK 470 LEU R 173 CG CD1 CD2 REMARK 470 GLN R 200 CG CD OE1 NE2 REMARK 470 ARG R 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU R 205 CG CD OE1 OE2 REMARK 470 GLN R 206 CG CD OE1 NE2 REMARK 470 ARG R 254 CG CD NE CZ NH1 NH2 REMARK 470 PHE R 256 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE R 291 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS R 298 SG REMARK 470 ARG R 318 CG CD NE CZ NH1 NH2 REMARK 470 ARG R 334 CG CD NE CZ NH1 NH2 REMARK 470 ASN R 335 CG OD1 ND2 REMARK 470 ASP R 336 CG OD1 OD2 REMARK 470 LEU R 337 CG CD1 CD2 REMARK 470 PHE R 338 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS R 339 CG CD CE NZ REMARK 470 PHE R 341 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS R 342 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 45.97 -83.49 REMARK 500 LEU A 310 -162.92 59.05 REMARK 500 TRP B 99 31.16 -94.09 REMARK 500 THR B 196 19.82 53.70 REMARK 500 CYS B 204 49.39 -82.56 REMARK 500 ASP B 205 -169.88 -128.15 REMARK 500 GLU B 215 -3.77 70.24 REMARK 500 PHE B 292 2.49 -67.62 REMARK 500 TRP B 332 2.43 -67.84 REMARK 500 GLU C 6 48.24 -95.39 REMARK 500 ARG C 23 -64.69 -95.51 REMARK 500 PHE C 25 31.32 -143.23 REMARK 500 LEU C 28 -60.31 -90.27 REMARK 500 LYS C 31 -169.23 -78.23 REMARK 500 VAL C 36 71.65 38.63 REMARK 500 ALA C 38 -8.33 73.22 REMARK 500 ILE R 158 -60.29 -91.70 REMARK 500 ARG R 166 21.46 -79.64 REMARK 500 HIS R 167 89.76 -152.01 REMARK 500 GLU R 205 -106.66 53.55 REMARK 500 PHE R 256 -135.09 57.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG R 166 0.11 SIDE CHAIN REMARK 500 ARG R 209 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62468 RELATED DB: EMDB REMARK 900 A CRYO_EM STRUCTURE OF CCR7 COMPLEX WITH CCL19 DBREF 9KO2 A 1 354 UNP P63096 GNAI1_HUMAN 1 354 DBREF 9KO2 B 2 340 UNP P62873 GBB1_HUMAN 2 340 DBREF 9KO2 C 1 69 UNP Q99731 CCL19_HUMAN 22 90 DBREF 9KO2 R 25 368 UNP P32248 CCR7_HUMAN 25 368 SEQADV 9KO2 ALA A 203 UNP P63096 GLY 203 CONFLICT SEQADV 9KO2 SER A 326 UNP P63096 ALA 326 CONFLICT SEQADV 9KO2 GLU A 328 UNP P63096 ASP 328 CONFLICT SEQADV 9KO2 GLY B -3 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B -2 UNP P62873 EXPRESSION TAG SEQADV 9KO2 LEU B -1 UNP P62873 EXPRESSION TAG SEQADV 9KO2 LEU B 0 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLN B 1 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 341 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 342 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 343 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 344 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 345 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 346 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 347 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 348 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 349 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 350 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 351 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 352 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 353 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 354 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 355 UNP P62873 EXPRESSION TAG SEQADV 9KO2 VAL B 356 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 357 UNP P62873 EXPRESSION TAG SEQADV 9KO2 GLY B 358 UNP P62873 EXPRESSION TAG SEQADV 9KO2 TRP B 359 UNP P62873 EXPRESSION TAG SEQADV 9KO2 ARG B 360 UNP P62873 EXPRESSION TAG SEQADV 9KO2 LEU B 361 UNP P62873 EXPRESSION TAG SEQADV 9KO2 PHE B 362 UNP P62873 EXPRESSION TAG SEQADV 9KO2 LYS B 363 UNP P62873 EXPRESSION TAG SEQADV 9KO2 LYS B 364 UNP P62873 EXPRESSION TAG SEQADV 9KO2 ILE B 365 UNP P62873 EXPRESSION TAG SEQADV 9KO2 SER B 366 UNP P62873 EXPRESSION TAG SEQRES 1 A 354 MET GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL SEQRES 2 A 354 GLU ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP SEQRES 3 A 354 GLY GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU SEQRES 4 A 354 GLY ALA GLY GLU SER GLY LYS SER THR ILE VAL LYS GLN SEQRES 5 A 354 MET LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU SEQRES 6 A 354 CYS LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE SEQRES 7 A 354 GLN SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU SEQRES 8 A 354 LYS ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA SEQRES 9 A 354 ARG GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY SEQRES 10 A 354 PHE MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU SEQRES 11 A 354 TRP LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER SEQRES 12 A 354 ARG GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU SEQRES 13 A 354 ASN ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO SEQRES 14 A 354 THR GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR SEQRES 15 A 354 GLY ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS SEQRES 16 A 354 PHE LYS MET PHE ASP VAL GLY ALA GLN ARG SER GLU ARG SEQRES 17 A 354 LYS LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE SEQRES 18 A 354 ILE PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU SEQRES 19 A 354 ALA GLU ASP GLU GLU MET ASN ARG MET HIS GLU SER MET SEQRES 20 A 354 LYS LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR SEQRES 21 A 354 ASP THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU SEQRES 22 A 354 PHE GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS SEQRES 23 A 354 TYR PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA SEQRES 24 A 354 ALA ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS SEQRES 25 A 354 ARG LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS SEQRES 26 A 354 SER THR GLU THR LYS ASN VAL GLN PHE VAL PHE ASP ALA SEQRES 27 A 354 VAL THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS SEQRES 28 A 354 GLY LEU PHE SEQRES 1 B 370 GLY SER LEU LEU GLN SER GLU LEU ASP GLN LEU ARG GLN SEQRES 2 B 370 GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA ARG SEQRES 3 B 370 LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR ASN SEQRES 4 B 370 ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR ARG SEQRES 5 B 370 ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA MET SEQRES 6 B 370 HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SER SEQRES 7 B 370 GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR THR SEQRES 8 B 370 ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP VAL SEQRES 9 B 370 MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL ALA SEQRES 10 B 370 CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN LEU SEQRES 11 B 370 LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU LEU SEQRES 12 B 370 ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE LEU SEQRES 13 B 370 ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR THR SEQRES 14 B 370 CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR THR SEQRES 15 B 370 THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SER SEQRES 16 B 370 LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA CYS SEQRES 17 B 370 ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY MET SEQRES 18 B 370 CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE ASN SEQRES 19 B 370 ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA THR SEQRES 20 B 370 GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU ARG SEQRES 21 B 370 ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN ILE SEQRES 22 B 370 ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER GLY SEQRES 23 B 370 ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS ASN SEQRES 24 B 370 VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL LEU SEQRES 25 B 370 ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL THR SEQRES 26 B 370 ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SER SEQRES 27 B 370 PHE LEU LYS ILE TRP ASN GLY SER SER GLY GLY GLY GLY SEQRES 28 B 370 SER GLY GLY GLY GLY SER SER GLY VAL SER GLY TRP ARG SEQRES 29 B 370 LEU PHE LYS LYS ILE SER SEQRES 1 C 69 GLY THR ASN ASP ALA GLU ASP CYS CYS LEU SER VAL THR SEQRES 2 C 69 GLN LYS PRO ILE PRO GLY TYR ILE VAL ARG ASN PHE HIS SEQRES 3 C 69 TYR LEU LEU ILE LYS ASP GLY CYS ARG VAL PRO ALA VAL SEQRES 4 C 69 VAL PHE THR THR LEU ARG GLY ARG GLN LEU CYS ALA PRO SEQRES 5 C 69 PRO ASP GLN PRO TRP VAL GLU ARG ILE ILE GLN ARG LEU SEQRES 6 C 69 GLN ARG THR SER SEQRES 1 R 344 GLN ASP GLU VAL THR ASP ASP TYR ILE GLY ASP ASN THR SEQRES 2 R 344 THR VAL ASP TYR THR LEU PHE GLU SER LEU CYS SER LYS SEQRES 3 R 344 LYS ASP VAL ARG ASN PHE LYS ALA TRP PHE LEU PRO ILE SEQRES 4 R 344 MET TYR SER ILE ILE CYS PHE VAL GLY LEU LEU GLY ASN SEQRES 5 R 344 GLY LEU VAL VAL LEU THR TYR ILE TYR PHE LYS ARG LEU SEQRES 6 R 344 LYS THR MET THR ASP THR TYR LEU LEU ASN LEU ALA VAL SEQRES 7 R 344 ALA ASP ILE LEU PHE LEU LEU THR LEU PRO PHE TRP ALA SEQRES 8 R 344 TYR SER ALA ALA LYS SER TRP VAL PHE GLY VAL HIS PHE SEQRES 9 R 344 CYS LYS LEU ILE PHE ALA ILE TYR LYS MET SER PHE PHE SEQRES 10 R 344 SER GLY MET LEU LEU LEU LEU CYS ILE SER ILE ASP ARG SEQRES 11 R 344 TYR VAL ALA ILE VAL GLN ALA VAL SER ALA HIS ARG HIS SEQRES 12 R 344 ARG ALA ARG VAL LEU LEU ILE SER LYS LEU SER CYS VAL SEQRES 13 R 344 GLY ILE TRP ILE LEU ALA THR VAL LEU SER ILE PRO GLU SEQRES 14 R 344 LEU LEU TYR SER ASP LEU GLN ARG SER SER SER GLU GLN SEQRES 15 R 344 ALA MET ARG CYS SER LEU ILE THR GLU HIS VAL GLU ALA SEQRES 16 R 344 PHE ILE THR ILE GLN VAL ALA GLN MET VAL ILE GLY PHE SEQRES 17 R 344 LEU VAL PRO LEU LEU ALA MET SER PHE CYS TYR LEU VAL SEQRES 18 R 344 ILE ILE ARG THR LEU LEU GLN ALA ARG ASN PHE GLU ARG SEQRES 19 R 344 ASN LYS ALA ILE LYS VAL ILE ILE ALA VAL VAL VAL VAL SEQRES 20 R 344 PHE ILE VAL PHE GLN LEU PRO TYR ASN GLY VAL VAL LEU SEQRES 21 R 344 ALA GLN THR VAL ALA ASN PHE ASN ILE THR SER SER THR SEQRES 22 R 344 CYS GLU LEU SER LYS GLN LEU ASN ILE ALA TYR ASP VAL SEQRES 23 R 344 THR TYR SER LEU ALA CYS VAL ARG CYS CYS VAL ASN PRO SEQRES 24 R 344 PHE LEU TYR ALA PHE ILE GLY VAL LYS PHE ARG ASN ASP SEQRES 25 R 344 LEU PHE LYS LEU PHE LYS ASP LEU GLY CYS LEU SER GLN SEQRES 26 R 344 GLU GLN LEU ARG GLN TRP SER SER CYS ARG HIS ILE ARG SEQRES 27 R 344 ARG SER SER MET SER VAL HELIX 1 AA1 ALA A 7 ARG A 32 1 26 HELIX 2 AA2 GLY A 45 GLN A 52 1 8 HELIX 3 AA3 GLU A 207 TRP A 211 5 5 HELIX 4 AA4 ILE A 212 GLU A 216 5 5 HELIX 5 AA5 SER A 228 TYR A 230 5 3 HELIX 6 AA6 ARG A 242 ASN A 255 1 14 HELIX 7 AA7 LYS A 270 SER A 281 1 12 HELIX 8 AA8 PRO A 282 CYS A 286 5 5 HELIX 9 AA9 THR A 295 ASP A 309 1 15 HELIX 10 AB1 THR A 327 CYS A 351 1 25 HELIX 11 AB2 GLN C 55 ARG C 67 1 13 HELIX 12 AB3 LYS R 50 LYS R 87 1 38 HELIX 13 AB4 THR R 91 LYS R 120 1 30 HELIX 14 AB5 GLY R 125 VAL R 159 1 35 HELIX 15 AB6 ARG R 168 SER R 190 1 23 HELIX 16 AB7 SER R 190 TYR R 196 1 7 HELIX 17 AB8 HIS R 216 ILE R 230 1 15 HELIX 18 AB9 PHE R 232 ALA R 253 1 22 HELIX 19 AC1 ARG R 258 ASN R 290 1 33 HELIX 20 AC2 THR R 297 CYS R 316 1 20 HELIX 21 AC3 VAL R 317 TYR R 326 1 10 HELIX 22 AC4 GLY R 330 LYS R 342 1 13 SHEET 1 AA1 6 VAL A 185 PHE A 191 0 SHEET 2 AA1 6 LEU A 194 ASP A 200 -1 O PHE A 196 N PHE A 189 SHEET 3 AA1 6 GLU A 33 GLY A 40 1 N LEU A 36 O PHE A 199 SHEET 4 AA1 6 ALA A 220 ALA A 226 1 O ILE A 222 N LEU A 39 SHEET 5 AA1 6 SER A 263 ASN A 269 1 O ILE A 265 N PHE A 223 SHEET 6 AA1 6 ILE A 319 PHE A 323 1 O TYR A 320 N ILE A 264 SHEET 1 AA2 4 THR B 47 ARG B 52 0 SHEET 2 AA2 4 PHE B 335 TRP B 339 -1 O LEU B 336 N LEU B 51 SHEET 3 AA2 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 AA2 4 VAL B 315 VAL B 320 -1 N SER B 316 O GLY B 330 SHEET 1 AA3 4 ILE B 58 TRP B 63 0 SHEET 2 AA3 4 LEU B 69 SER B 74 -1 O VAL B 71 N HIS B 62 SHEET 3 AA3 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 AA3 4 LYS B 89 PRO B 94 -1 O ILE B 93 N LEU B 79 SHEET 1 AA4 4 VAL B 100 TYR B 105 0 SHEET 2 AA4 4 TYR B 111 GLY B 116 -1 O GLY B 115 N MET B 101 SHEET 3 AA4 4 ILE B 120 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA4 4 ARG B 134 ALA B 140 -1 O ARG B 137 N ILE B 123 SHEET 1 AA5 4 CYS B 148 PHE B 151 0 SHEET 2 AA5 4 GLN B 156 SER B 160 -1 O VAL B 158 N ARG B 150 SHEET 3 AA5 4 THR B 165 ASP B 170 -1 O TRP B 169 N ILE B 157 SHEET 4 AA5 4 GLN B 175 THR B 181 -1 O THR B 178 N LEU B 168 SHEET 1 AA6 4 VAL B 187 LEU B 192 0 SHEET 2 AA6 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188 SHEET 3 AA6 4 LYS B 209 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA6 4 MET B 217 THR B 221 -1 O GLN B 220 N LEU B 210 SHEET 1 AA7 4 ILE B 229 PHE B 234 0 SHEET 2 AA7 4 ALA B 240 SER B 245 -1 O GLY B 244 N ALA B 231 SHEET 3 AA7 4 CYS B 250 ASP B 254 -1 O ARG B 251 N THR B 243 SHEET 4 AA7 4 GLU B 260 TYR B 264 -1 O TYR B 264 N CYS B 250 SHEET 1 AA8 4 ILE B 273 PHE B 278 0 SHEET 2 AA8 4 LEU B 284 TYR B 289 -1 O GLY B 288 N SER B 275 SHEET 3 AA8 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AA8 4 ARG B 304 LEU B 308 -1 O GLY B 306 N VAL B 296 SHEET 1 AA9 2 SER R 197 GLN R 200 0 SHEET 2 AA9 2 ARG R 209 LEU R 212 -1 O SER R 211 N ASP R 198 SSBOND 1 CYS C 8 CYS C 34 1555 1555 2.03 SSBOND 2 CYS C 9 CYS C 50 1555 1555 2.03 SSBOND 3 CYS R 129 CYS R 210 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1682 PHE A 354 TER 3932 ASN B 340 TER 4383 SER C 69 TER 6677 GLY R 345 CONECT 3987 4148 CONECT 3993 4262 CONECT 4148 3987 CONECT 4262 3993 CONECT 5084 5695 CONECT 5695 5084 MASTER 495 0 0 22 36 0 0 6 6673 4 6 90 END