HEADER OXIDOREDUCTASE 22-NOV-24 9KP0 TITLE CRYSTAL STRUCTURE OF ORYZA SATIVA HPPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_TAXID: 4530; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NISHIO,N.NISHIJIMA,T.KUBOTA,Y.FURUHATA,Y.KATO REVDAT 2 02-JUL-25 9KP0 1 JRNL REVDAT 1 25-JUN-25 9KP0 0 JRNL AUTH T.NISHIO,N.NISHIJIMA,T.KUBOTA,Y.FURUHATA,Y.NANAO,H.PERMANA, JRNL AUTH 2 T.FURUHASHI,Y.KATO JRNL TITL MECHANISM OF HERBICIDAL ACTION AND RICE SELECTIVITY OF JRNL TITL 2 IPTRIAZOPYRID: A NOVEL AZOLE CARBOXAMIDE-BASED INHIBITOR OF JRNL TITL 3 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE. JRNL REF J.AGRIC.FOOD CHEM. V. 73 15950 2025 JRNL REFN ESSN 1520-5118 JRNL PMID 40495343 JRNL DOI 10.1021/ACS.JAFC.4C11831 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 65758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 497 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.00200 REMARK 3 B33 (A**2) : 0.00200 REMARK 3 B12 (A**2) : -0.00300 REMARK 3 B13 (A**2) : -0.00200 REMARK 3 B23 (A**2) : 0.00200 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6140 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5672 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8324 ; 1.315 ; 1.808 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12994 ; 0.464 ; 1.735 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 789 ; 6.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;10.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;13.724 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 891 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7543 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1525 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1182 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 53 ; 0.242 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2967 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 476 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.138 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.109 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 3 ; 0.099 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3175 ; 1.843 ; 2.869 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3175 ; 1.839 ; 2.869 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3957 ; 3.008 ; 5.141 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3958 ; 3.008 ; 5.142 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2965 ; 2.279 ; 3.180 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2966 ; 2.279 ; 3.182 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4367 ; 3.776 ; 5.703 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4368 ; 3.775 ; 5.704 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9KP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.690 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.32 REMARK 200 R MERGE FOR SHELL (I) : 0.84200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SP9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE (PH 4.5), 20 VOL% REMARK 280 PEG1000, AND 0.2 M ZINC ACETATE 2 MM COCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -341.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 ASN A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 PHE A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 HIS A 109 REMARK 465 GLY A 110 REMARK 465 VAL A 111 REMARK 465 GLY A 112 REMARK 465 ALA A 113 REMARK 465 ASP A 114 REMARK 465 LYS A 401 REMARK 465 ASP A 402 REMARK 465 GLU A 403 REMARK 465 SER A 404 REMARK 465 GLY A 405 REMARK 465 ALA A 440 REMARK 465 PRO A 441 REMARK 465 THR A 442 REMARK 465 VAL A 443 REMARK 465 GLN A 444 REMARK 465 GLY A 445 REMARK 465 SER A 446 REMARK 465 ALA B 0 REMARK 465 PRO B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 ALA B 8 REMARK 465 THR B 9 REMARK 465 THR B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 VAL B 13 REMARK 465 SER B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 20 REMARK 465 GLU B 21 REMARK 465 ASN B 22 REMARK 465 ALA B 23 REMARK 465 GLY B 24 REMARK 465 PHE B 25 REMARK 465 ARG B 26 REMARK 465 GLY B 107 REMARK 465 ASP B 108 REMARK 465 HIS B 109 REMARK 465 GLY B 110 REMARK 465 VAL B 111 REMARK 465 GLY B 112 REMARK 465 ALA B 113 REMARK 465 ASP B 114 REMARK 465 ALA B 115 REMARK 465 LYS B 401 REMARK 465 ASP B 402 REMARK 465 GLU B 403 REMARK 465 SER B 404 REMARK 465 GLY B 405 REMARK 465 GLN B 406 REMARK 465 GLU B 407 REMARK 465 ALA B 440 REMARK 465 PRO B 441 REMARK 465 THR B 442 REMARK 465 VAL B 443 REMARK 465 GLN B 444 REMARK 465 GLY B 445 REMARK 465 SER B 446 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 346 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 -168.05 -167.70 REMARK 500 ALA A 94 -113.54 49.60 REMARK 500 LEU A 182 -64.58 -103.10 REMARK 500 ASP A 198 54.76 -116.62 REMARK 500 ASP A 312 75.38 -157.02 REMARK 500 ASP A 369 -156.33 -124.13 REMARK 500 THR A 387 -79.93 -120.80 REMARK 500 ASP B 78 -165.28 -168.69 REMARK 500 ALA B 94 -114.65 49.62 REMARK 500 LEU B 182 -65.72 -101.01 REMARK 500 ASP B 312 79.83 -154.85 REMARK 500 ALA B 347 15.43 -141.05 REMARK 500 THR B 387 -85.88 -124.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.14 SIDE CHAIN REMARK 500 ARG A 130 0.21 SIDE CHAIN REMARK 500 ARG A 146 0.08 SIDE CHAIN REMARK 500 ARG A 346 0.10 SIDE CHAIN REMARK 500 ARG B 219 0.11 SIDE CHAIN REMARK 500 ARG B 346 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 136 NE2 REMARK 620 2 ASP A 185 OD2 76.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD1 REMARK 620 2 ASP B 152 OD2 104.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD2 REMARK 620 2 ASP B 149 OD1 27.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 305 NE2 119.7 REMARK 620 3 GLU A 391 OE2 96.2 95.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 283 ND1 REMARK 620 2 GLU B 354 OE1 88.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 354 OE2 REMARK 620 2 HIS B 136 NE2 29.8 REMARK 620 3 ASP B 185 OD2 32.1 3.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 361 OE2 REMARK 620 2 GLU B 181 OE2 72.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 223 NE2 REMARK 620 2 HIS B 305 NE2 114.2 REMARK 620 3 GLU B 391 OE2 100.6 95.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9KOZ RELATED DB: PDB REMARK 900 RELATED ID: 9KOY RELATED DB: PDB DBREF 9KP0 A 0 446 PDB 9KP0 9KP0 0 446 DBREF 9KP0 B 0 446 PDB 9KP0 9KP0 0 446 SEQRES 1 A 446 ALA PRO PRO THR PRO THR PRO THR ALA THR THR GLY ALA SEQRES 2 A 446 VAL SER ALA ALA ALA ALA ALA GLY GLU ASN ALA GLY PHE SEQRES 3 A 446 ARG LEU VAL GLY HIS ARG ARG PHE VAL ARG ALA ASN PRO SEQRES 4 A 446 ARG SER ASP ARG PHE GLN ALA LEU ALA PHE HIS HIS VAL SEQRES 5 A 446 GLU LEU TRP CYS ALA ASP ALA ALA SER ALA ALA GLY ARG SEQRES 6 A 446 PHE ALA PHE ALA LEU GLY ALA PRO LEU ALA ALA ARG SER SEQRES 7 A 446 ASP LEU SER THR GLY ASN SER ALA HIS ALA SER LEU LEU SEQRES 8 A 446 LEU ARG SER ALA SER VAL ALA PHE LEU PHE THR ALA PRO SEQRES 9 A 446 TYR GLY GLY ASP HIS GLY VAL GLY ALA ASP ALA ALA THR SEQRES 10 A 446 THR ALA SER ILE PRO SER PHE SER PRO GLY ALA ALA ARG SEQRES 11 A 446 ARG PHE ALA ALA ASP HIS GLY LEU ALA VAL HIS ALA VAL SEQRES 12 A 446 ALA LEU ARG VAL ALA ASP ALA ALA ASP ALA PHE ARG ALA SEQRES 13 A 446 SER VAL ALA ALA GLY ALA ARG PRO ALA PHE GLN PRO ALA SEQRES 14 A 446 ASP LEU GLY GLY GLY PHE GLY LEU ALA GLU VAL GLU LEU SEQRES 15 A 446 TYR GLY ASP VAL VAL LEU ARG PHE VAL SER HIS PRO ASP SEQRES 16 A 446 GLY ALA ASP ALA PRO PHE LEU PRO GLY PHE GLU GLY VAL SEQRES 17 A 446 SER ASN PRO GLY ALA VAL ASP TYR GLY LEU ARG ARG PHE SEQRES 18 A 446 ASP HIS VAL VAL GLY ASN VAL PRO GLU LEU ALA PRO VAL SEQRES 19 A 446 ALA ALA TYR ILE SER GLY PHE THR GLY PHE HIS GLU PHE SEQRES 20 A 446 ALA GLU PHE THR ALA GLU ASP VAL GLY THR ALA GLU SER SEQRES 21 A 446 GLY LEU ASN SER VAL VAL LEU ALA ASN ASN ALA GLU THR SEQRES 22 A 446 VAL LEU LEU PRO LEU ASN GLU PRO VAL HIS GLY THR LYS SEQRES 23 A 446 ARG ARG SER GLN ILE GLN THR TYR LEU ASP HIS HIS GLY SEQRES 24 A 446 GLY PRO GLY VAL GLN HIS ILE ALA LEU ALA SER ASP ASP SEQRES 25 A 446 VAL LEU GLY THR LEU ARG GLU MET ARG ALA ARG SER ALA SEQRES 26 A 446 MET GLY GLY PHE GLU PHE LEU ALA PRO PRO PRO PRO ASN SEQRES 27 A 446 TYR TYR ASP GLY VAL ARG ARG ARG ALA GLY ASP VAL LEU SEQRES 28 A 446 SER GLU GLU GLN ILE ASN GLU CYS GLN GLU LEU GLY VAL SEQRES 29 A 446 LEU VAL ASP ARG ASP ASP GLN GLY VAL LEU LEU GLN ILE SEQRES 30 A 446 PHE THR LYS PRO VAL GLY ASP ARG PRO THR PHE PHE LEU SEQRES 31 A 446 GLU MET ILE GLN ARG ILE GLY CYS MET GLU LYS ASP GLU SEQRES 32 A 446 SER GLY GLN GLU TYR GLN LYS GLY GLY CYS GLY GLY PHE SEQRES 33 A 446 GLY LYS GLY ASN PHE SER GLU LEU PHE LYS SER ILE GLU SEQRES 34 A 446 GLU TYR GLU LYS SER LEU GLU ALA LYS GLN ALA PRO THR SEQRES 35 A 446 VAL GLN GLY SER SEQRES 1 B 446 ALA PRO PRO THR PRO THR PRO THR ALA THR THR GLY ALA SEQRES 2 B 446 VAL SER ALA ALA ALA ALA ALA GLY GLU ASN ALA GLY PHE SEQRES 3 B 446 ARG LEU VAL GLY HIS ARG ARG PHE VAL ARG ALA ASN PRO SEQRES 4 B 446 ARG SER ASP ARG PHE GLN ALA LEU ALA PHE HIS HIS VAL SEQRES 5 B 446 GLU LEU TRP CYS ALA ASP ALA ALA SER ALA ALA GLY ARG SEQRES 6 B 446 PHE ALA PHE ALA LEU GLY ALA PRO LEU ALA ALA ARG SER SEQRES 7 B 446 ASP LEU SER THR GLY ASN SER ALA HIS ALA SER LEU LEU SEQRES 8 B 446 LEU ARG SER ALA SER VAL ALA PHE LEU PHE THR ALA PRO SEQRES 9 B 446 TYR GLY GLY ASP HIS GLY VAL GLY ALA ASP ALA ALA THR SEQRES 10 B 446 THR ALA SER ILE PRO SER PHE SER PRO GLY ALA ALA ARG SEQRES 11 B 446 ARG PHE ALA ALA ASP HIS GLY LEU ALA VAL HIS ALA VAL SEQRES 12 B 446 ALA LEU ARG VAL ALA ASP ALA ALA ASP ALA PHE ARG ALA SEQRES 13 B 446 SER VAL ALA ALA GLY ALA ARG PRO ALA PHE GLN PRO ALA SEQRES 14 B 446 ASP LEU GLY GLY GLY PHE GLY LEU ALA GLU VAL GLU LEU SEQRES 15 B 446 TYR GLY ASP VAL VAL LEU ARG PHE VAL SER HIS PRO ASP SEQRES 16 B 446 GLY ALA ASP ALA PRO PHE LEU PRO GLY PHE GLU GLY VAL SEQRES 17 B 446 SER ASN PRO GLY ALA VAL ASP TYR GLY LEU ARG ARG PHE SEQRES 18 B 446 ASP HIS VAL VAL GLY ASN VAL PRO GLU LEU ALA PRO VAL SEQRES 19 B 446 ALA ALA TYR ILE SER GLY PHE THR GLY PHE HIS GLU PHE SEQRES 20 B 446 ALA GLU PHE THR ALA GLU ASP VAL GLY THR ALA GLU SER SEQRES 21 B 446 GLY LEU ASN SER VAL VAL LEU ALA ASN ASN ALA GLU THR SEQRES 22 B 446 VAL LEU LEU PRO LEU ASN GLU PRO VAL HIS GLY THR LYS SEQRES 23 B 446 ARG ARG SER GLN ILE GLN THR TYR LEU ASP HIS HIS GLY SEQRES 24 B 446 GLY PRO GLY VAL GLN HIS ILE ALA LEU ALA SER ASP ASP SEQRES 25 B 446 VAL LEU GLY THR LEU ARG GLU MET ARG ALA ARG SER ALA SEQRES 26 B 446 MET GLY GLY PHE GLU PHE LEU ALA PRO PRO PRO PRO ASN SEQRES 27 B 446 TYR TYR ASP GLY VAL ARG ARG ARG ALA GLY ASP VAL LEU SEQRES 28 B 446 SER GLU GLU GLN ILE ASN GLU CYS GLN GLU LEU GLY VAL SEQRES 29 B 446 LEU VAL ASP ARG ASP ASP GLN GLY VAL LEU LEU GLN ILE SEQRES 30 B 446 PHE THR LYS PRO VAL GLY ASP ARG PRO THR PHE PHE LEU SEQRES 31 B 446 GLU MET ILE GLN ARG ILE GLY CYS MET GLU LYS ASP GLU SEQRES 32 B 446 SER GLY GLN GLU TYR GLN LYS GLY GLY CYS GLY GLY PHE SEQRES 33 B 446 GLY LYS GLY ASN PHE SER GLU LEU PHE LYS SER ILE GLU SEQRES 34 B 446 GLU TYR GLU LYS SER LEU GLU ALA LYS GLN ALA PRO THR SEQRES 35 B 446 VAL GLN GLY SER HET CO A 501 1 HET ACY A 502 4 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN A 506 1 HET ZN A 507 1 HET ZN A 508 1 HET ZN A 509 1 HET CO B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HET ZN B 506 1 HETNAM CO COBALT (II) ION HETNAM ACY ACETIC ACID HETNAM ZN ZINC ION FORMUL 3 CO 2(CO 2+) FORMUL 4 ACY C2 H4 O2 FORMUL 5 ZN 12(ZN 2+) FORMUL 18 HOH *497(H2 O) HELIX 1 AA1 ASP A 57 GLY A 70 1 14 HELIX 2 AA2 ASP A 78 GLY A 82 5 5 HELIX 3 AA3 ALA A 115 ALA A 119 5 5 HELIX 4 AA4 SER A 125 GLY A 137 1 13 HELIX 5 AA5 ASP A 149 ALA A 160 1 12 HELIX 6 AA6 GLU A 230 GLY A 243 1 14 HELIX 7 AA7 THR A 251 GLY A 256 1 6 HELIX 8 AA8 SER A 289 GLY A 299 1 11 HELIX 9 AA9 ASP A 312 ARG A 323 1 12 HELIX 10 AB1 SER A 324 GLY A 327 5 4 HELIX 11 AB2 PRO A 336 GLY A 348 1 13 HELIX 12 AB3 SER A 352 GLY A 363 1 12 HELIX 13 AB4 GLY A 417 ALA A 437 1 21 HELIX 14 AB5 ASP B 57 GLY B 70 1 14 HELIX 15 AB6 ASP B 78 GLY B 82 5 5 HELIX 16 AB7 SER B 125 GLY B 137 1 13 HELIX 17 AB8 ASP B 149 ALA B 160 1 12 HELIX 18 AB9 GLU B 230 GLY B 243 1 14 HELIX 19 AC1 THR B 251 GLY B 256 1 6 HELIX 20 AC2 SER B 289 GLY B 299 1 11 HELIX 21 AC3 ASP B 312 ARG B 323 1 12 HELIX 22 AC4 SER B 324 GLY B 327 5 4 HELIX 23 AC5 PRO B 336 GLY B 348 1 13 HELIX 24 AC6 SER B 352 GLY B 363 1 12 HELIX 25 AC7 GLY B 417 ALA B 437 1 21 SHEET 1 AA1 9 PRO A 164 GLY A 172 0 SHEET 2 AA1 9 PHE A 175 TYR A 183 -1 O PHE A 175 N LEU A 171 SHEET 3 AA1 9 VAL A 186 SER A 192 -1 O PHE A 190 N ALA A 178 SHEET 4 AA1 9 ALA A 139 VAL A 147 1 N LEU A 145 O ARG A 189 SHEET 5 AA1 9 ALA A 45 TRP A 54 -1 N GLU A 52 O HIS A 141 SHEET 6 AA1 9 VAL A 96 PRO A 103 1 O LEU A 99 N LEU A 53 SHEET 7 AA1 9 HIS A 86 SER A 93 -1 N SER A 93 O VAL A 96 SHEET 8 AA1 9 LEU A 73 SER A 77 -1 N ALA A 74 O LEU A 90 SHEET 9 AA1 9 GLU A 206 GLY A 207 -1 O GLU A 206 N ARG A 76 SHEET 1 AA2 8 HIS A 245 PHE A 250 0 SHEET 2 AA2 8 LEU A 262 ALA A 268 -1 O VAL A 266 N PHE A 247 SHEET 3 AA2 8 LEU A 275 PRO A 281 -1 O LEU A 276 N LEU A 267 SHEET 4 AA2 8 LEU A 218 ASN A 227 1 N GLY A 226 O ASN A 279 SHEET 5 AA2 8 GLY A 302 SER A 310 -1 O ALA A 309 N ARG A 219 SHEET 6 AA2 8 PHE A 389 GLY A 397 1 O GLU A 391 N LEU A 308 SHEET 7 AA2 8 GLY A 372 PHE A 378 -1 N VAL A 373 O ILE A 396 SHEET 8 AA2 8 LEU A 365 ARG A 368 -1 N ASP A 367 O LEU A 374 SHEET 1 AA3 2 MET A 399 GLU A 400 0 SHEET 2 AA3 2 TYR A 408 GLN A 409 -1 O TYR A 408 N GLU A 400 SHEET 1 AA4 9 PRO B 164 GLY B 172 0 SHEET 2 AA4 9 PHE B 175 TYR B 183 -1 O PHE B 175 N LEU B 171 SHEET 3 AA4 9 VAL B 186 SER B 192 -1 O PHE B 190 N ALA B 178 SHEET 4 AA4 9 ALA B 139 VAL B 147 1 N LEU B 145 O ARG B 189 SHEET 5 AA4 9 ALA B 45 TRP B 54 -1 N HIS B 49 O ALA B 144 SHEET 6 AA4 9 VAL B 96 PRO B 103 1 O LEU B 99 N LEU B 53 SHEET 7 AA4 9 HIS B 86 SER B 93 -1 N SER B 93 O VAL B 96 SHEET 8 AA4 9 LEU B 73 SER B 77 -1 N ALA B 74 O LEU B 90 SHEET 9 AA4 9 GLU B 206 GLY B 207 -1 O GLU B 206 N ARG B 76 SHEET 1 AA5 8 HIS B 245 PHE B 250 0 SHEET 2 AA5 8 LEU B 262 ALA B 268 -1 O SER B 264 N PHE B 250 SHEET 3 AA5 8 LEU B 275 PRO B 281 -1 O LEU B 276 N LEU B 267 SHEET 4 AA5 8 LEU B 218 ASN B 227 1 N GLY B 226 O ASN B 279 SHEET 5 AA5 8 GLY B 302 SER B 310 -1 O ALA B 307 N ASP B 222 SHEET 6 AA5 8 PHE B 389 GLY B 397 1 O GLU B 391 N LEU B 308 SHEET 7 AA5 8 GLY B 372 PHE B 378 -1 N VAL B 373 O ILE B 396 SHEET 8 AA5 8 LEU B 365 ARG B 368 -1 N ASP B 367 O LEU B 374 SSBOND 1 CYS A 398 CYS A 413 1555 1555 2.64 SSBOND 2 CYS B 398 CYS B 413 1555 1555 2.46 LINK NE2 HIS A 30 ZN ZN A 503 1555 1555 2.30 LINK NE2 HIS A 136 ZN ZN A 505 1555 1555 2.34 LINK OD1 ASP A 149 ZN ZN A 507 1555 1555 1.90 LINK OD2 ASP A 152 ZN ZN A 506 1555 1555 2.14 LINK OD2 ASP A 185 ZN ZN A 505 1555 1555 2.02 LINK NE2 HIS A 223 CO CO A 501 1555 1555 2.06 LINK ND1 HIS A 283 ZN ZN A 508 1555 1555 2.03 LINK NE2 HIS A 297 ZN ZN A 509 1555 1555 2.04 LINK NE2 HIS A 305 CO CO A 501 1555 1555 2.07 LINK OE2 GLU A 354 ZN ZN B 504 1555 1455 1.95 LINK OE2 GLU A 361 ZN ZN B 505 1555 1455 2.59 LINK OD1 ASP A 367 ZN ZN A 504 1555 1555 2.04 LINK OE2 GLU A 391 CO CO A 501 1555 1555 1.78 LINK ZN ZN A 506 OD1 ASP B 149 1554 1555 1.86 LINK ZN ZN A 507 OD2 ASP B 152 1554 1555 2.02 LINK ZN ZN A 508 OE1 GLU B 354 1565 1555 2.04 LINK NE2 HIS B 30 ZN ZN B 502 1555 1555 2.35 LINK NE2 HIS B 136 ZN ZN B 504 1555 1555 1.94 LINK OE2 GLU B 181 ZN ZN B 505 1555 1555 2.30 LINK OD2 ASP B 185 ZN ZN B 504 1555 1555 1.99 LINK NE2 HIS B 223 CO CO B 501 1555 1555 2.04 LINK NE2 HIS B 297 ZN ZN B 506 1555 1555 2.22 LINK NE2 HIS B 305 CO CO B 501 1555 1555 2.13 LINK OD1 ASP B 367 ZN ZN B 503 1555 1555 2.05 LINK OE2 GLU B 391 CO CO B 501 1555 1555 1.79 CRYST1 59.110 64.590 73.160 101.39 107.96 97.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016918 0.002077 0.006196 0.00000 SCALE2 0.000000 0.015599 0.004009 0.00000 SCALE3 0.000000 0.000000 0.014836 0.00000 CONECT 29 6003 CONECT 751 6005 CONECT 840 6007 CONECT 859 6006 CONECT 1091 6005 CONECT 1383 5998 CONECT 1820 6008 CONECT 1942 6009 CONECT 1997 5998 CONECT 2472 6004 CONECT 2670 5998 CONECT 2724 2803 CONECT 2803 2724 CONECT 3039 6011 CONECT 3756 6013 CONECT 4064 6014 CONECT 4096 6013 CONECT 4388 6010 CONECT 4947 6015 CONECT 5002 6010 CONECT 5477 6012 CONECT 5675 6010 CONECT 5729 5790 CONECT 5790 5729 CONECT 5998 1383 1997 2670 CONECT 5999 6000 6001 6002 CONECT 6000 5999 CONECT 6001 5999 CONECT 6002 5999 CONECT 6003 29 CONECT 6004 2472 CONECT 6005 751 1091 CONECT 6006 859 CONECT 6007 840 CONECT 6008 1820 CONECT 6009 1942 CONECT 6010 4388 5002 5675 CONECT 6011 3039 CONECT 6012 5477 CONECT 6013 3756 4096 CONECT 6014 4064 CONECT 6015 4947 MASTER 469 0 15 25 36 0 0 6 6510 2 42 70 END