HEADER VIRAL PROTEIN 27-NOV-24 9KR4 TITLE ENTEROVIRUS B 75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENTEROVIRUS B 75 CHAIN A; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ENTEROVIRUS B 75 CHAIN B; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: ENTEROVIRUS B 75 CHAIN C; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS B75; SOURCE 3 ORGANISM_TAXID: 282345; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ENTEROVIRUS B75; SOURCE 6 ORGANISM_TAXID: 282345; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROVIRUS B75; SOURCE 9 ORGANISM_TAXID: 282345 KEYWDS ENTEROVIRUS B 75, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.TANG,S.CAO,Q.CHEN,C.ZHONG,F.WANG,Z.LIU,X.ZHANG,C.KE REVDAT 1 24-DEC-25 9KR4 0 JRNL AUTH L.TANG,S.CAO,Q.CHEN,C.ZHONG,F.WANG,Z.LIU,X.ZHANG,C.KE JRNL TITL ENTEROVIRUS B 75 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.290 REMARK 3 NUMBER OF PARTICLES : 22476 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300054123. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS B75 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 75 C - N - CD ANGL. DEV. = -36.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 24 139.86 -171.88 REMARK 500 VAL A 198 78.73 55.70 REMARK 500 PHE B 26 17.55 59.17 REMARK 500 LYS B 37 35.09 -90.41 REMARK 500 SER B 38 -161.53 -76.00 REMARK 500 PRO B 75 -42.37 27.21 REMARK 500 ASN C 56 49.64 -93.48 REMARK 500 ASN C 63 33.38 -98.29 REMARK 500 SER C 64 -169.81 -168.04 REMARK 500 CYS C 121 54.18 -102.30 REMARK 500 ASN C 220 -164.49 -124.44 REMARK 500 LEU C 226 69.40 60.94 REMARK 500 GLU C 235 -3.00 63.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 74 PRO B 75 -112.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62518 RELATED DB: EMDB REMARK 900 ENTEROVIRUS B 75 DBREF 9KR4 A 1 232 PDB 9KR4 9KR4 1 232 DBREF 9KR4 B 1 250 PDB 9KR4 9KR4 1 250 DBREF 9KR4 C 1 241 PDB 9KR4 9KR4 1 241 SEQRES 1 A 232 PHE VAL GLY GLY PHE HIS THR ARG SER GLU SER SER LEU SEQRES 2 A 232 GLU ASN PHE LEU GLY ARG ALA ALA ASN THR TYR ARG THR SEQRES 3 A 232 SER PHE LYS THR LEU SER THR LYS PRO SER LEU LYS PHE SEQRES 4 A 232 ALA SER TRP THR ILE THR THR ARG LYS VAL ALA MET LEU SEQRES 5 A 232 ARG ARG LYS MET GLU MET PHE THR TYR MET ARG PHE ASP SEQRES 6 A 232 VAL GLU VAL THR PHE VAL ILE THR SER SER LYS CYS LYS SEQRES 7 A 232 SER ASP PRO SER SER GLY SER LEU PRO VAL LEU THR PHE SEQRES 8 A 232 MET VAL GLN TYR VAL PRO PRO GLY GLY PRO VAL PRO SER SEQRES 9 A 232 SER VAL ASP SER PHE SER TRP GLN SER SER THR ASN PRO SEQRES 10 A 232 SER ILE PHE TRP THR GLN GLY ASN ALA PRO PRO ARG MET SEQRES 11 A 232 SER ILE PRO TYR MET SER ILE GLY ASN ALA TYR SER ASN SEQRES 12 A 232 TYR TYR ASP GLY TYR SER HIS HIS GLY ALA ASP GLY VAL SEQRES 13 A 232 TYR GLY TYR ASN THR LEU ASN ASN GLN GLY GLN LEU TYR SEQRES 14 A 232 PHE ARG HIS VAL ASN SER SER ASN PRO GLY ALA TYR THR SEQRES 15 A 232 CYS VAL VAL LYS ILE TYR PHE LYS LEU GLN HIS VAL LYS SEQRES 16 A 232 ALA TRP VAL PRO ARG PRO PRO ARG LEU CYS ASN TYR GLN SEQRES 17 A 232 ARG ALA GLU ASN VAL ASN PHE LYS VAL GLN GLY VAL THR SEQRES 18 A 232 ASP THR LYS GLU SER ILE THR ALA ASN PRO GLY SEQRES 1 B 250 SER SER ASN VAL ARG SER ILE THR LEU GLY ASN SER THR SEQRES 2 B 250 ILE THR THR GLN GLU SER SER ASN VAL VAL VAL GLY PHE SEQRES 3 B 250 GLY VAL TRP PRO SER TYR LEU SER LYS SER LYS SER GLY SEQRES 4 B 250 SER GLY SER THR GLN PRO THR GLN PRO ASP THR ALA THR SEQRES 5 B 250 GLU ARG PHE TYR THR LEU GLU SER VAL LYS TRP GLN LYS SEQRES 6 B 250 THR ASP ASN GLY TRP TYR TRP LYS PHE PRO ASP ALA LEU SEQRES 7 B 250 LYS ASP MET GLY LEU PHE GLY GLN ASN MET LEU TYR HIS SEQRES 8 B 250 PHE LEU GLY ARG THR GLY TRP THR ILE HIS VAL LYS CYS SEQRES 9 B 250 GLU ALA SER ARG PHE PHE GLN GLY ALA LEU LEU VAL VAL SEQRES 10 B 250 CYS VAL PRO GLN ALA GLU LYS GLY CYS ALA VAL ILE THR SEQRES 11 B 250 ARG ASP VAL ASN ALA THR ALA LEU ASP GLU GLY ASP LYS SEQRES 12 B 250 ALA LYS LYS PHE THR ALA GLY SER VAL SER SER GLN ASN SEQRES 13 B 250 GLY VAL GLN THR ALA VAL TYR ASN ALA ALA MET GLY VAL SEQRES 14 B 250 ALA VAL GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE SEQRES 15 B 250 ASN LEU LYS THR ASN ASN SER ALA THR ILE VAL LYS PRO SEQRES 16 B 250 TYR ILE ASN SER ILE PRO MET GLU ASN MET TYR ARG HIS SEQRES 17 B 250 PHE ASN PHE THR LEU MET VAL ILE PRO PHE VAL PRO LEU SEQRES 18 B 250 GLU TRP SER VAL GLY ALA CYS THR TYR VAL PRO ILE THR SEQRES 19 B 250 VAL THR VAL ALA PRO GLN ASN ALA GLU TYR ILE GLY LEU SEQRES 20 B 250 ARG LEU ALA SEQRES 1 C 241 GLY ASN PRO THR GLN LEU VAL PRO GLY SER ASN MET TYR SEQRES 2 C 241 LEU THR SER ASP ASP PHE ARG SER PRO GLU ALA MET PRO SEQRES 3 C 241 GLN PHE GLU VAL THR PRO GLU MET PHE ILE PRO GLY GLU SEQRES 4 C 241 VAL HIS ASN LEU MET GLU ILE ALA GLU THR ASP SER THR SEQRES 5 C 241 VAL PRO VAL ASN ASN VAL GLY MET ALA VAL ASN SER MET SEQRES 6 C 241 GLU ALA TYR ARG ILE GLY VAL ASN PRO ASN THR GLY SER SEQRES 7 C 241 GLY THR GLN VAL TYR GLY TRP PRO LEU ASN PRO GLY LYS SEQRES 8 C 241 SER SER VAL PHE LYS ARG THR ASN LEU GLY GLU ILE LEU SEQRES 9 C 241 ASN TYR PHE ALA HIS TRP SER GLY SER ILE GLN LEU THR SEQRES 10 C 241 PHE VAL PHE CYS GLY SER ALA GLN ALA THR GLY LYS PHE SEQRES 11 C 241 LEU LEU ALA TYR SER PRO PRO GLY ALA GLY ALA PRO THR SEQRES 12 C 241 ASP ARG LYS GLY ALA ARG LEU GLY THR HIS VAL VAL TRP SEQRES 13 C 241 ASP VAL GLY LEU GLN SER SER CYS VAL LEU GLU VAL PRO SEQRES 14 C 241 TRP ILE SER ASN THR PHE TYR ARG LYS ASP LYS SER SER SEQRES 15 C 241 GLY THR GLY PHE SER LYS ALA GLY TYR VAL THR CYS TRP SEQRES 16 C 241 PHE GLN THR SER ILE VAL ALA PRO ALA ASP ALA MET SER SEQRES 17 C 241 LYS CYS TYR ILE MET CYS PHE VAL SER ALA ASP ASN ASP SEQRES 18 C 241 PHE SER VAL ARG LEU LEU LYS ASP THR PRO PHE ILE LYS SEQRES 19 C 241 GLU GLN ALA ALA ARG ARG VAL HELIX 1 AA1 ARG A 8 SER A 11 5 4 HELIX 2 AA2 SER A 12 GLY A 18 1 7 HELIX 3 AA3 LYS A 34 LEU A 37 5 4 HELIX 4 AA4 VAL A 49 GLU A 57 1 9 HELIX 5 AA5 SER A 108 SER A 113 5 6 HELIX 6 AA6 ASN A 160 ASN A 164 5 5 HELIX 7 AA7 PHE B 26 VAL B 28 5 3 HELIX 8 AA8 LEU B 33 SER B 38 5 6 HELIX 9 AA9 GLY B 39 GLN B 44 1 6 HELIX 10 AB1 THR B 50 GLU B 53 5 4 HELIX 11 AB2 PRO B 75 LYS B 79 5 5 HELIX 12 AB3 GLY B 82 HIS B 91 1 10 HELIX 13 AB4 ASN B 134 ASP B 139 1 6 HELIX 14 AB5 ALA B 161 ALA B 165 5 5 HELIX 15 AB6 ALA B 170 PHE B 177 5 8 HELIX 16 AB7 LEU C 43 GLU C 48 1 6 HELIX 17 AB8 VAL C 58 ARG C 69 5 12 HELIX 18 AB9 THR C 98 ASN C 105 1 8 HELIX 19 AC1 ASP C 144 GLY C 151 1 8 HELIX 20 AC2 PRO C 203 MET C 207 5 5 HELIX 21 AC3 GLU C 235 ARG C 240 1 6 SHEET 1 AA1 4 ALA A 21 LYS A 29 0 SHEET 2 AA1 4 TYR A 181 PRO A 199 -1 O PHE A 189 N ALA A 21 SHEET 3 AA1 4 PHE A 59 LYS A 76 -1 N ASP A 65 O GLN A 192 SHEET 4 AA1 4 TYR A 141 SER A 142 -1 O TYR A 141 N MET A 62 SHEET 1 AA2 4 ARG A 129 ILE A 132 0 SHEET 2 AA2 4 PHE A 59 LYS A 76 -1 N VAL A 68 O MET A 130 SHEET 3 AA2 4 TYR A 181 PRO A 199 -1 O GLN A 192 N ASP A 65 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 196 SHEET 1 AA3 4 PHE A 39 THR A 43 0 SHEET 2 AA3 4 GLN A 167 VAL A 173 -1 O LEU A 168 N TRP A 42 SHEET 3 AA3 4 THR A 90 VAL A 96 -1 N VAL A 96 O GLN A 167 SHEET 4 AA3 4 SER A 118 THR A 122 -1 O TRP A 121 N PHE A 91 SHEET 1 AA4 2 VAL B 4 LEU B 9 0 SHEET 2 AA4 2 SER B 12 GLN B 17 -1 O ILE B 14 N ILE B 7 SHEET 1 AA5 5 VAL B 22 VAL B 24 0 SHEET 2 AA5 5 SER B 189 LYS B 194 1 O VAL B 193 N VAL B 23 SHEET 3 AA5 5 GLY B 94 CYS B 104 -1 N TRP B 98 O LYS B 194 SHEET 4 AA5 5 VAL B 231 ILE B 245 -1 O GLN B 240 N GLY B 97 SHEET 5 AA5 5 TYR B 56 THR B 57 -1 N TYR B 56 O VAL B 237 SHEET 1 AA6 3 THR B 46 PRO B 48 0 SHEET 2 AA6 3 VAL B 231 ILE B 245 -1 O TYR B 244 N GLN B 47 SHEET 3 AA6 3 VAL B 61 TRP B 63 -1 N TRP B 63 O VAL B 231 SHEET 1 AA7 5 LYS B 145 LYS B 146 0 SHEET 2 AA7 5 TRP B 70 LYS B 73 -1 N TYR B 71 O LYS B 145 SHEET 3 AA7 5 PHE B 211 GLU B 222 -1 O LEU B 213 N TRP B 72 SHEET 4 AA7 5 GLN B 111 PRO B 120 -1 N VAL B 119 O THR B 212 SHEET 5 AA7 5 HIS B 179 ASN B 183 -1 O ILE B 182 N LEU B 114 SHEET 1 AA8 4 SER C 51 THR C 52 0 SHEET 2 AA8 4 CYS C 210 ALA C 218 -1 O VAL C 216 N SER C 51 SHEET 3 AA8 4 PHE C 107 PHE C 120 -1 N GLN C 115 O SER C 217 SHEET 4 AA8 4 SER C 163 SER C 172 -1 O LEU C 166 N LEU C 116 SHEET 1 AA9 4 ILE C 70 VAL C 72 0 SHEET 2 AA9 4 CYS C 210 ALA C 218 -1 O CYS C 210 N VAL C 72 SHEET 3 AA9 4 PHE C 107 PHE C 120 -1 N GLN C 115 O SER C 217 SHEET 4 AA9 4 SER C 223 LEU C 227 -1 O SER C 223 N SER C 111 SHEET 1 AB1 4 GLN C 81 PRO C 86 0 SHEET 2 AB1 4 TYR C 191 PHE C 196 -1 O CYS C 194 N VAL C 82 SHEET 3 AB1 4 LYS C 129 SER C 135 -1 N ALA C 133 O THR C 193 SHEET 4 AB1 4 THR C 152 ASP C 157 -1 O TRP C 156 N PHE C 130 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 1840 GLY A 232 TER 3777 ALA B 250 TER 5625 VAL C 241 MASTER 161 0 0 21 39 0 0 6 5622 3 0 57 END