HEADER DNA BINDING PROTEIN/DNA 09-DEC-24 9KYL TITLE CRYSTAL STRUCTURE OF HUMAN TRIP4 IN COMPLEX WITH 11BP DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVATING SIGNAL COINTEGRATOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASC-1,THYROID RECEPTOR-INTERACTING PROTEIN 4,TR-INTERACTING COMPND 5 PROTEIN 4,TRIP-4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*GP*GP*TP*AP*AP*TP*TP*CP*T)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*AP*GP*AP*AP*AP*TP*AP*CP*CP*G)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIP4, RQT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ASCH DOMAIN, DSDNA, COMPLEX, DNA BINDING PROTEIN/DNA, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.T.GUO,C.Y.MENG,Y.WEN,B.X.WU REVDAT 3 24-DEC-25 9KYL 1 JRNL REVDAT 2 24-SEP-25 9KYL 1 JRNL REVDAT 1 20-AUG-25 9KYL 0 JRNL AUTH C.MENG,X.SHI,W.GUO,X.JIAN,J.ZHAO,Y.WEN,R.WANG,Y.LI,S.XU, JRNL AUTH 2 H.CHEN,J.ZHANG,M.CHEN,H.CHEN,B.WU JRNL TITL STRUCTURAL ANALYSIS OF ASCH DOMAIN-CONTAINING PROTEINS AND JRNL TITL 2 THEIR IMPLICATIONS FOR NUCLEOTIDE PROCESSING. JRNL REF STRUCTURE V. 33 2095 2025 JRNL REFN ISSN 0969-2126 JRNL PMID 40939588 JRNL DOI 10.1016/J.STR.2025.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21RC1_5156 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 18187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8300 - 4.1200 1.00 2923 167 0.1834 0.2102 REMARK 3 2 4.1200 - 3.2700 0.99 2856 161 0.1968 0.2803 REMARK 3 3 3.2700 - 2.8600 1.00 2890 151 0.2377 0.2856 REMARK 3 4 2.8600 - 2.6000 0.93 2673 142 0.2592 0.3091 REMARK 3 5 2.6000 - 2.4100 0.79 2256 125 0.2533 0.2736 REMARK 3 6 2.4100 - 2.2700 0.68 1962 111 0.2388 0.2758 REMARK 3 7 2.2700 - 2.1500 0.58 1691 79 0.2233 0.3340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2757 REMARK 3 ANGLE : 1.170 3813 REMARK 3 CHIRALITY : 0.067 403 REMARK 3 PLANARITY : 0.011 418 REMARK 3 DIHEDRAL : 26.626 1062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 434 through 520 or REMARK 3 (resid 521 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 522 REMARK 3 through 571)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 434 through 567 or REMARK 3 (resid 568 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 569 REMARK 3 through 571)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300054527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M L-PROLINE, 0.1 M HEPES PH 7.5, REMARK 280 10% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.16950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.39900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.16950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.39900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 410 REMARK 465 LEU A 411 REMARK 465 GLU A 412 REMARK 465 PHE A 413 REMARK 465 ASN A 414 REMARK 465 SER A 415 REMARK 465 PHE A 416 REMARK 465 GLN A 417 REMARK 465 HIS A 418 REMARK 465 GLN A 419 REMARK 465 LEU A 420 REMARK 465 ARG A 421 REMARK 465 ILE A 422 REMARK 465 GLN A 423 REMARK 465 ASP A 424 REMARK 465 GLN A 425 REMARK 465 GLU A 426 REMARK 465 PHE A 427 REMARK 465 GLN A 428 REMARK 465 GLU A 429 REMARK 465 GLY A 430 REMARK 465 PHE A 431 REMARK 465 ASP A 432 REMARK 465 GLY A 433 REMARK 465 LYS A 572 REMARK 465 GLY A 573 REMARK 465 LEU A 574 REMARK 465 MET A 575 REMARK 465 LYS A 576 REMARK 465 GLN A 577 REMARK 465 ASN A 578 REMARK 465 LYS A 579 REMARK 465 ALA A 580 REMARK 465 VAL A 581 REMARK 465 GLY B 410 REMARK 465 LEU B 411 REMARK 465 GLU B 412 REMARK 465 PHE B 413 REMARK 465 ASN B 414 REMARK 465 SER B 415 REMARK 465 PHE B 416 REMARK 465 GLN B 417 REMARK 465 HIS B 418 REMARK 465 GLN B 419 REMARK 465 LEU B 420 REMARK 465 ARG B 421 REMARK 465 ILE B 422 REMARK 465 GLN B 423 REMARK 465 ASP B 424 REMARK 465 GLN B 425 REMARK 465 GLU B 426 REMARK 465 PHE B 427 REMARK 465 GLN B 428 REMARK 465 GLU B 429 REMARK 465 GLY B 430 REMARK 465 PHE B 431 REMARK 465 ASP B 432 REMARK 465 MET B 575 REMARK 465 LYS B 576 REMARK 465 GLN B 577 REMARK 465 ASN B 578 REMARK 465 LYS B 579 REMARK 465 ALA B 580 REMARK 465 VAL B 581 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 568 CG CD OE1 NE2 REMARK 470 GLN B 521 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 627 O HOH B 653 1.39 REMARK 500 O LYS A 571 O HOH A 601 1.67 REMARK 500 O3' DG D 10 O HOH D 101 1.81 REMARK 500 O HOH B 607 O HOH B 611 1.85 REMARK 500 O HOH B 604 O HOH B 640 1.85 REMARK 500 OP2 DA D 7 O HOH D 102 1.85 REMARK 500 O HOH C 106 O HOH C 126 1.92 REMARK 500 NH2 ARG B 453 O HOH B 601 1.96 REMARK 500 O5' DC C 2 O HOH C 101 1.97 REMARK 500 OH TYR A 488 O HOH A 602 1.97 REMARK 500 O HOH B 607 O HOH B 649 1.99 REMARK 500 O HOH B 603 O HOH B 608 2.00 REMARK 500 OD2 ASP B 501 O HOH B 602 2.01 REMARK 500 O HOH B 623 O HOH B 654 2.02 REMARK 500 OP2 DG C 4 O HOH C 102 2.03 REMARK 500 O HOH A 647 O HOH A 649 2.05 REMARK 500 O HOH D 118 O HOH D 122 2.07 REMARK 500 N7 DA D 5 O HOH D 103 2.08 REMARK 500 O HOH B 617 O HOH B 620 2.11 REMARK 500 NH2 ARG B 489 O HOH B 603 2.12 REMARK 500 N GLY B 433 O HOH B 604 2.12 REMARK 500 O HOH C 105 O HOH C 121 2.12 REMARK 500 OP1 DG D 10 O HOH D 104 2.16 REMARK 500 O HOH C 101 O HOH C 108 2.16 REMARK 500 O HOH B 637 O HOH B 642 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 494 O GLN B 525 1554 2.15 REMARK 500 O HOH D 121 O HOH B 656 2556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 4 O3' DG C 4 C3' -0.039 REMARK 500 DC D 9 O3' DC D 9 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 9 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 526 52.47 -141.56 REMARK 500 LYS A 558 -144.63 59.66 REMARK 500 PHE B 526 57.39 -145.64 REMARK 500 LYS B 558 -145.58 57.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 9KYL A 410 581 UNP Q15650 TRIP4_HUMAN 410 581 DBREF 9KYL C 2 11 PDB 9KYL 9KYL 2 11 DBREF 9KYL D 1 10 PDB 9KYL 9KYL 1 10 DBREF 9KYL B 410 581 UNP Q15650 TRIP4_HUMAN 410 581 SEQRES 1 A 172 GLY LEU GLU PHE ASN SER PHE GLN HIS GLN LEU ARG ILE SEQRES 2 A 172 GLN ASP GLN GLU PHE GLN GLU GLY PHE ASP GLY GLY TRP SEQRES 3 A 172 CYS LEU SER VAL HIS GLN PRO TRP ALA SER LEU LEU VAL SEQRES 4 A 172 ARG GLY ILE LYS ARG VAL GLU GLY ARG SER TRP TYR THR SEQRES 5 A 172 PRO HIS ARG GLY ARG LEU TRP ILE ALA ALA THR ALA LYS SEQRES 6 A 172 LYS PRO SER PRO GLN GLU VAL SER GLU LEU GLN ALA THR SEQRES 7 A 172 TYR ARG LEU LEU ARG GLY LYS ASP VAL GLU PHE PRO ASN SEQRES 8 A 172 ASP TYR PRO SER GLY CYS LEU LEU GLY CYS VAL ASP LEU SEQRES 9 A 172 ILE ASP CYS LEU SER GLN LYS GLN PHE LYS GLU GLN PHE SEQRES 10 A 172 PRO ASP ILE SER GLN GLU SER ASP SER PRO PHE VAL PHE SEQRES 11 A 172 ILE CYS LYS ASN PRO GLN GLU MET VAL VAL LYS PHE PRO SEQRES 12 A 172 ILE LYS GLY ASN PRO LYS ILE TRP LYS LEU ASP SER LYS SEQRES 13 A 172 ILE HIS GLN GLY ALA LYS LYS GLY LEU MET LYS GLN ASN SEQRES 14 A 172 LYS ALA VAL SEQRES 1 C 10 DC DG DG DT DA DA DT DT DC DT SEQRES 1 D 10 DA DG DA DA DA DT DA DC DC DG SEQRES 1 B 172 GLY LEU GLU PHE ASN SER PHE GLN HIS GLN LEU ARG ILE SEQRES 2 B 172 GLN ASP GLN GLU PHE GLN GLU GLY PHE ASP GLY GLY TRP SEQRES 3 B 172 CYS LEU SER VAL HIS GLN PRO TRP ALA SER LEU LEU VAL SEQRES 4 B 172 ARG GLY ILE LYS ARG VAL GLU GLY ARG SER TRP TYR THR SEQRES 5 B 172 PRO HIS ARG GLY ARG LEU TRP ILE ALA ALA THR ALA LYS SEQRES 6 B 172 LYS PRO SER PRO GLN GLU VAL SER GLU LEU GLN ALA THR SEQRES 7 B 172 TYR ARG LEU LEU ARG GLY LYS ASP VAL GLU PHE PRO ASN SEQRES 8 B 172 ASP TYR PRO SER GLY CYS LEU LEU GLY CYS VAL ASP LEU SEQRES 9 B 172 ILE ASP CYS LEU SER GLN LYS GLN PHE LYS GLU GLN PHE SEQRES 10 B 172 PRO ASP ILE SER GLN GLU SER ASP SER PRO PHE VAL PHE SEQRES 11 B 172 ILE CYS LYS ASN PRO GLN GLU MET VAL VAL LYS PHE PRO SEQRES 12 B 172 ILE LYS GLY ASN PRO LYS ILE TRP LYS LEU ASP SER LYS SEQRES 13 B 172 ILE HIS GLN GLY ALA LYS LYS GLY LEU MET LYS GLN ASN SEQRES 14 B 172 LYS ALA VAL FORMUL 5 HOH *162(H2 O) HELIX 1 AA1 PRO A 442 ARG A 449 1 8 HELIX 2 AA2 SER A 477 GLY A 493 1 17 HELIX 3 AA3 GLN A 519 PHE A 526 1 8 HELIX 4 AA4 ILE A 529 SER A 533 5 5 HELIX 5 AA5 ASP A 563 LYS A 571 1 9 HELIX 6 AA6 PRO B 442 ARG B 449 1 8 HELIX 7 AA7 SER B 477 GLY B 493 1 17 HELIX 8 AA8 GLN B 519 PHE B 526 1 8 HELIX 9 AA9 ILE B 529 SER B 533 5 5 HELIX 10 AB1 ASP B 563 LEU B 574 1 12 SHEET 1 AA1 6 VAL A 454 ARG A 457 0 SHEET 2 AA1 6 PHE A 537 PRO A 552 -1 O PHE A 539 N GLU A 455 SHEET 3 AA1 6 CYS A 506 SER A 518 -1 N LEU A 507 O PHE A 551 SHEET 4 AA1 6 GLY A 465 ALA A 471 -1 N GLY A 465 O LEU A 513 SHEET 5 AA1 6 TRP A 435 VAL A 439 1 N TRP A 435 O TRP A 468 SHEET 6 AA1 6 ILE A 559 LYS A 561 -1 O TRP A 560 N CYS A 436 SHEET 1 AA2 6 VAL B 454 ARG B 457 0 SHEET 2 AA2 6 PHE B 537 GLU B 546 -1 O PHE B 539 N GLU B 455 SHEET 3 AA2 6 LEU B 507 SER B 518 -1 N ASP B 512 O LYS B 542 SHEET 4 AA2 6 GLY B 465 ALA B 471 -1 N LEU B 467 O VAL B 511 SHEET 5 AA2 6 TRP B 435 VAL B 439 1 N LEU B 437 O TRP B 468 SHEET 6 AA2 6 ILE B 559 LYS B 561 -1 O TRP B 560 N CYS B 436 CISPEP 1 GLN A 441 PRO A 442 0 3.51 CISPEP 2 GLN B 441 PRO B 442 0 2.23 CRYST1 74.339 74.798 73.304 90.00 102.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013452 0.000000 0.003009 0.00000 SCALE2 0.000000 0.013369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013979 0.00000 MTRIX1 1 -0.868638 -0.495447 0.000099 15.75334 1 MTRIX2 1 -0.491590 0.861851 -0.124707 8.45296 1 MTRIX3 1 0.061701 -0.108374 -0.992194 67.27027 1 MASTER 404 0 0 10 12 0 0 9 2806 4 0 30 END