HEADER METAL BINDING PROTEIN 10-DEC-24 9KZL TITLE CRYSTAL STRUCTURE OF THE FUNCTIONAL UNIT (HTH1-H) OF HEMOCYANIN FROM TITLE 2 HALIOTIS DISCUS HANNAI,CONTAINING A MET SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOCYANIN TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMOCYANIN FUNCTIONAL UNIT (HTH1-H); COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOCYANIN TYPE 1; COMPND 7 CHAIN: B, C; COMPND 8 SYNONYM: HEMOCYANIN FUNCTIONAL UNIT (HTH1-H) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALIOTIS DISCUS HANNAI; SOURCE 3 ORGANISM_COMMON: JAPANESE DISC ABALONE; SOURCE 4 ORGANISM_TAXID: 42344; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HALIOTIS DISCUS HANNAI; SOURCE 7 ORGANISM_COMMON: JAPANESE DISC ABALONE; SOURCE 8 ORGANISM_TAXID: 42344 KEYWDS ORBICULAR, COPPER COORDINATION, MET STATE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.ZHAO,H.C.YANG REVDAT 1 15-JAN-25 9KZL 0 JRNL AUTH G.H.ZHAO,H.C.YANG JRNL TITL CRYSTAL STRUCTURE OF THE FUNCTIONAL UNIT (HTH1-H) OF JRNL TITL 2 HEMOCYANIN FROM HALIOTIS DISCUS HANNAI,CONTAINING A MET JRNL TITL 3 STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 126198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 6302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6000 - 6.1900 0.99 4093 226 0.1610 0.1810 REMARK 3 2 6.1900 - 4.9200 1.00 4086 206 0.1614 0.1922 REMARK 3 3 4.9200 - 4.3000 1.00 4068 213 0.1407 0.1701 REMARK 3 4 4.3000 - 3.9100 1.00 4081 189 0.1396 0.1742 REMARK 3 5 3.9100 - 3.6300 1.00 4061 207 0.1531 0.1998 REMARK 3 6 3.6300 - 3.4200 1.00 4046 205 0.1576 0.1811 REMARK 3 7 3.4200 - 3.2500 1.00 4074 190 0.1599 0.2027 REMARK 3 8 3.2500 - 3.1000 1.00 4059 194 0.1724 0.2114 REMARK 3 9 3.1000 - 2.9900 1.00 4047 240 0.1720 0.2183 REMARK 3 10 2.9800 - 2.8800 1.00 3957 262 0.1747 0.2383 REMARK 3 11 2.8800 - 2.7900 1.00 4007 199 0.1762 0.2331 REMARK 3 12 2.7900 - 2.7100 1.00 4020 203 0.1830 0.2281 REMARK 3 13 2.7100 - 2.6400 0.99 3996 213 0.1774 0.2107 REMARK 3 14 2.6400 - 2.5800 0.99 4062 212 0.1756 0.2280 REMARK 3 15 2.5800 - 2.5200 0.99 3948 240 0.1736 0.2345 REMARK 3 16 2.5200 - 2.4600 0.99 4021 231 0.1857 0.2383 REMARK 3 17 2.4600 - 2.4200 0.99 3999 209 0.1863 0.2241 REMARK 3 18 2.4200 - 2.3700 0.99 3994 210 0.1813 0.2251 REMARK 3 19 2.3700 - 2.3300 0.99 3986 198 0.1787 0.2364 REMARK 3 20 2.3300 - 2.2900 0.99 3999 178 0.1842 0.2372 REMARK 3 21 2.2900 - 2.2500 0.99 3943 214 0.1754 0.2285 REMARK 3 22 2.2500 - 2.2200 0.99 3996 201 0.1824 0.2448 REMARK 3 23 2.2200 - 2.1800 0.98 3955 203 0.1848 0.2102 REMARK 3 24 2.1800 - 2.1500 0.98 4011 203 0.1840 0.2509 REMARK 3 25 2.1500 - 2.1200 0.98 3915 211 0.1797 0.2451 REMARK 3 26 2.1200 - 2.1000 0.98 3921 213 0.1806 0.2186 REMARK 3 27 2.1000 - 2.0700 0.98 3996 202 0.1873 0.2516 REMARK 3 28 2.0700 - 2.0500 0.98 3897 226 0.1893 0.2318 REMARK 3 29 2.0500 - 2.0200 0.98 3938 206 0.1936 0.2459 REMARK 3 30 2.0200 - 2.0000 0.93 3720 198 0.2050 0.2625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.196 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 12311 REMARK 3 ANGLE : 0.876 16699 REMARK 3 CHIRALITY : 0.055 1764 REMARK 3 PLANARITY : 0.008 2155 REMARK 3 DIHEDRAL : 15.813 4454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 13-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300054307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 283 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 7.21 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 7.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 28.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.0 REMARK 200 STARTING MODEL: 3QJO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000,ETHANOL,PHOSPHATE, PH 4.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.28650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.83750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.28650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.83750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 11.27570 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -96.93439 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 TYR A 380 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 ASP B 61 CG OD1 OD2 REMARK 470 TYR B 380 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 22 CG CD CE NZ REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 ASP C 61 CG OD1 OD2 REMARK 470 TYR C 231 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 235 CG OD1 OD2 REMARK 470 TYR C 380 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CU CU B 504 O O B 505 1.31 REMARK 500 HO EOH A 502 O HOH A 601 1.56 REMARK 500 HO EOH B 502 O HOH B 601 1.58 REMARK 500 O EOH A 502 O HOH A 601 1.71 REMARK 500 O HOH C 677 O HOH C 896 1.76 REMARK 500 O EOH B 502 O HOH B 601 1.76 REMARK 500 OE1 GLU A 257 O HOH A 602 1.79 REMARK 500 O HOH B 830 O HOH B 954 1.83 REMARK 500 OE2 GLU C 485 O HOH C 601 1.85 REMARK 500 O HOH A 768 O HOH A 911 1.87 REMARK 500 OD1 ASN B 145 O2 MAN B 501 1.89 REMARK 500 O HOH B 610 O HOH B 835 1.89 REMARK 500 O HOH B 787 O HOH B 981 1.94 REMARK 500 O HOH C 743 O HOH C 898 1.95 REMARK 500 N ARG C 129 O HOH C 602 1.95 REMARK 500 O HOH C 671 O HOH C 896 1.95 REMARK 500 OE2 GLU C 332 O HOH C 603 1.95 REMARK 500 OE2 GLU A 198 O HOH A 603 1.96 REMARK 500 O HOH C 820 O HOH C 863 1.96 REMARK 500 NZ LYS B 301 O HOH B 602 1.96 REMARK 500 O EOH A 502 O HOH A 604 1.97 REMARK 500 N HIS B 330 O HOH B 603 1.97 REMARK 500 NE2 HIS B 179 O O B 505 1.97 REMARK 500 OE1 GLU A 58 O HOH A 605 1.98 REMARK 500 NH1 ARG C 282 O GLY C 285 1.98 REMARK 500 O HOH B 788 O HOH B 933 2.01 REMARK 500 N HIS A 474 O HOH A 606 2.01 REMARK 500 OE1 GLU C 485 O HOH C 604 2.01 REMARK 500 O O B 505 O O B 506 2.02 REMARK 500 O CYS A 56 N GLU A 58 2.03 REMARK 500 OG1 THR A 460 O HOH A 607 2.04 REMARK 500 O HOH B 634 O HOH B 972 2.05 REMARK 500 O PRO B 57 O HOH B 604 2.06 REMARK 500 O HOH A 894 O HOH A 928 2.06 REMARK 500 OE1 GLU B 151 O HOH B 602 2.08 REMARK 500 NH1 ARG C 314 O HOH C 605 2.08 REMARK 500 NH1 ARG C 303 O HOH C 606 2.08 REMARK 500 OD1 ASP B 277 O HOH B 605 2.10 REMARK 500 O HOH A 626 O HOH A 754 2.10 REMARK 500 O HOH B 779 O HOH B 931 2.10 REMARK 500 O ASP A 239 O HOH A 608 2.10 REMARK 500 NH2 ARG A 303 O HOH A 609 2.10 REMARK 500 O HOH A 876 O HOH A 970 2.11 REMARK 500 O ALA A 400 O HOH A 610 2.11 REMARK 500 O HOH B 688 O HOH B 783 2.12 REMARK 500 O HOH A 618 O HOH A 944 2.13 REMARK 500 O HOH A 610 O HOH A 829 2.13 REMARK 500 N LEU B 340 O HOH B 606 2.13 REMARK 500 O HOH B 966 O HOH B 994 2.14 REMARK 500 O HOH B 779 O HOH B 940 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 60 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 903 O HOH B 948 2554 2.14 REMARK 500 O HOH A 968 O HOH A 968 2554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 57 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 90.60 74.38 REMARK 500 CYS A 56 -133.67 -102.63 REMARK 500 PRO A 57 -24.29 20.31 REMARK 500 GLU A 58 101.56 60.26 REMARK 500 LYS A 59 129.80 65.82 REMARK 500 ASP A 62 60.73 -107.89 REMARK 500 ASP A 138 79.37 -150.09 REMARK 500 ASN A 145 61.63 -162.71 REMARK 500 TYR A 192 57.52 -92.84 REMARK 500 LEU A 240 -38.59 135.10 REMARK 500 ASN A 262 43.53 -107.64 REMARK 500 GLU A 329 -116.11 -152.33 REMARK 500 ALA A 400 -85.94 -30.40 REMARK 500 HIS A 401 32.75 -98.76 REMARK 500 GLN A 489 50.06 -112.82 REMARK 500 ASN A 490 -7.62 85.09 REMARK 500 LEU B 18 9.36 -68.72 REMARK 500 ASN B 54 92.75 77.97 REMARK 500 GLU B 58 97.55 81.54 REMARK 500 LYS B 59 120.30 67.46 REMARK 500 ASP B 61 -33.48 76.11 REMARK 500 ASP B 138 79.06 -154.17 REMARK 500 ASN B 145 72.69 -151.16 REMARK 500 ASN B 262 50.92 -106.76 REMARK 500 ARG B 284 56.56 28.72 REMARK 500 ALA B 328 -178.37 -64.17 REMARK 500 ASP B 329 17.30 -166.41 REMARK 500 GLU B 351 19.61 54.87 REMARK 500 GLN B 489 43.33 -103.14 REMARK 500 ASN B 490 -11.70 90.26 REMARK 500 ASN C 54 88.35 65.14 REMARK 500 CYS C 56 -119.95 -98.38 REMARK 500 PRO C 57 47.19 -13.08 REMARK 500 GLU C 58 110.61 -0.48 REMARK 500 LYS C 59 100.49 58.69 REMARK 500 ASP C 61 -7.41 70.55 REMARK 500 ASP C 62 74.27 -115.78 REMARK 500 ARG C 129 -67.67 96.34 REMARK 500 ASP C 138 71.39 -150.01 REMARK 500 ASN C 145 64.74 -157.88 REMARK 500 CYS C 236 -26.38 -159.43 REMARK 500 LEU C 240 -43.69 127.04 REMARK 500 ASN C 262 40.40 -106.48 REMARK 500 ASN C 275 42.43 72.80 REMARK 500 HIS C 330 102.40 79.49 REMARK 500 GLU C 351 17.39 57.78 REMARK 500 PRO C 458 35.66 -84.49 REMARK 500 ASP C 473 -70.29 86.19 REMARK 500 GLN C 489 42.38 -108.72 REMARK 500 ASN C 490 -11.20 92.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 56 PRO A 57 -141.39 REMARK 500 CYS C 56 PRO C 57 -143.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 6.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 50 NE2 REMARK 620 2 HIS A 69 NE2 115.5 REMARK 620 3 HIS A 78 NE2 113.8 104.0 REMARK 620 4 OH A 505 O 109.9 109.9 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 179 NE2 REMARK 620 2 HIS A 183 NE2 93.9 REMARK 620 3 HIS A 210 NE2 101.6 114.1 REMARK 620 4 OH A 505 O 112.2 107.6 123.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 50 NE2 REMARK 620 2 HIS B 69 NE2 121.6 REMARK 620 3 HIS B 78 NE2 116.8 95.7 REMARK 620 4 O B 506 O 89.3 130.5 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 179 NE2 REMARK 620 2 HIS B 183 NE2 96.4 REMARK 620 3 HIS B 210 NE2 103.7 130.0 REMARK 620 4 O B 506 O 124.2 97.3 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 50 NE2 REMARK 620 2 HIS C 69 NE2 123.3 REMARK 620 3 HIS C 78 NE2 115.0 102.9 REMARK 620 4 OH C 505 O 113.7 90.4 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 179 NE2 REMARK 620 2 HIS C 183 NE2 93.4 REMARK 620 3 HIS C 210 NE2 118.1 105.6 REMARK 620 4 OH C 505 O 100.5 101.9 130.2 REMARK 620 N 1 2 3 DBREF1 9KZL A 10 498 UNP A0A7R6RYX0_HALDH DBREF2 9KZL A A0A7R6RYX0 2929 3418 DBREF1 9KZL B 10 498 UNP A0A7R6RYX0_HALDH DBREF2 9KZL B A0A7R6RYX0 2929 3418 DBREF1 9KZL C 10 498 UNP A0A7R6RYX0_HALDH DBREF2 9KZL C A0A7R6RYX0 2929 3418 SEQADV 9KZL ASN A 102 UNP A0A7R6RYX ASP 3021 CONFLICT SEQADV 9KZL A UNP A0A7R6RYX THR 3248 DELETION SEQADV 9KZL GLU A 329 UNP A0A7R6RYX ASP 3249 CONFLICT SEQADV 9KZL TYR A 380 UNP A0A7R6RYX ALA 3300 CONFLICT SEQADV 9KZL ASN B 102 UNP A0A7R6RYX ASP 3021 CONFLICT SEQADV 9KZL B UNP A0A7R6RYX THR 3248 DELETION SEQADV 9KZL TYR B 380 UNP A0A7R6RYX ALA 3300 CONFLICT SEQADV 9KZL ASN C 102 UNP A0A7R6RYX ASP 3021 CONFLICT SEQADV 9KZL C UNP A0A7R6RYX THR 3248 DELETION SEQADV 9KZL TYR C 380 UNP A0A7R6RYX ALA 3300 CONFLICT SEQRES 1 A 489 VAL LEU ILE ARG LYS GLU VAL ASP LEU LEU SER LEU LYS SEQRES 2 A 489 GLU ALA ASN ALA ILE LYS ASP ALA LEU TYR LYS LEU GLN SEQRES 3 A 489 ASN ASP HIS SER LYS GLY GLY PHE GLU GLU ILE ALA GLY SEQRES 4 A 489 TYR HIS GLY TYR PRO ASN LYS CYS PRO GLU LYS GLY ASP SEQRES 5 A 489 ASP LYS TYR PRO CYS CYS VAL HIS GLY MET PRO ILE PHE SEQRES 6 A 489 PRO HIS TRP HIS ARG LEU HIS THR ILE GLN MET GLU ARG SEQRES 7 A 489 ALA LEU LYS ASN HIS GLY SER GLN ILE GLY ILE PRO TYR SEQRES 8 A 489 TRP ASN TRP THR LYS ARG MET SER SER ILE PRO ALA PHE SEQRES 9 A 489 PHE GLY ASP ASP SER ASN ASN ASN PRO PHE TYR LYS TYR SEQRES 10 A 489 HIS ILE ARG ALA VAL ASN GLN TYR THR THR ARG ASP VAL SEQRES 11 A 489 ASP VAL GLU LEU PHE ASN GLN THR LYS PHE GLY GLU TYR SEQRES 12 A 489 ASP TYR LEU TYR TYR LEU THR LEU GLN VAL LEU GLU GLU SEQRES 13 A 489 ASN SER PHE CYS ASP PHE GLU VAL GLN TYR GLU ILE LEU SEQRES 14 A 489 HIS ASN ALA VAL HIS ALA TRP LEU GLY GLY ALA GLY LYS SEQRES 15 A 489 TYR SER MET SER THR LEU GLU TYR SER ALA TYR ASP PRO SEQRES 16 A 489 VAL PHE MET ILE HIS HIS SER SER LEU ASP ARG ILE TRP SEQRES 17 A 489 ILE LEU TRP GLN GLN LEU GLN LYS ARG ARG MET LYS PRO SEQRES 18 A 489 TYR TYR ALA ALA ASP CYS ALA GLY ASP LEU MET LYS PHE SEQRES 19 A 489 PRO MET HIS PRO PHE SER TYR LYS SER GLU ASN GLU ASP SEQRES 20 A 489 GLU PHE THR ARG VAL ASN SER VAL PRO ASN ILE VAL PHE SEQRES 21 A 489 ASP HIS TYR LYS PHE ASN TYR ASP TYR ASP ASN MET ARG SEQRES 22 A 489 ILE ARG GLY HIS ASP ILE ASN GLU LEU GLU ALA ILE ILE SEQRES 23 A 489 ASN GLU LEU ARG ASN LYS ASP ARG ILE PHE ALA GLY PHE SEQRES 24 A 489 VAL LEU SER GLY ILE ARG ILE THR ALA THR VAL LYS VAL SEQRES 25 A 489 PHE ILE HIS GLY THR GLY ALA GLU HIS GLU GLU PHE ALA SEQRES 26 A 489 GLY LYS PHE ALA ILE LEU GLY GLY GLU LYS GLU MET PRO SEQRES 27 A 489 TRP ALA TYR GLU ARG LEU LEU LYS LEU ASP ILE THR ASP SEQRES 28 A 489 ALA VAL HIS HIS LEU HIS LEU LYS ASP GLU GLU ILE ARG SEQRES 29 A 489 PHE ARG MET GLU VAL THR TYR TYR ASN GLY VAL PRO VAL SEQRES 30 A 489 SER THR LYS LEU ALA ASP PRO LEU ILE VAL HIS ARG PRO SEQRES 31 A 489 ALA HIS ALA SER HIS ASP ILE LEU VAL ILE PRO VAL GLY SEQRES 32 A 489 LYS GLY HIS GLU LEU PRO PRO LYS VAL VAL VAL LYS SER SEQRES 33 A 489 GLY THR LYS ILE GLU PHE THR PRO ILE ASP SER SER VAL SEQRES 34 A 489 ASP ARG ALA MET VAL GLU LEU GLY SER PHE THR ALA MET SEQRES 35 A 489 ALA LYS CYS ILE VAL PRO PRO PHE THR TYR ASN ALA PHE SEQRES 36 A 489 GLU LEU ASN LYS VAL TYR SER VAL ASP HIS GLY ASP TYR SEQRES 37 A 489 TYR ILE THR ALA GLY THR HIS GLU LEU CYS GLU GLN ASN SEQRES 38 A 489 VAL ARG LEU ASN VAL HIS VAL GLU SEQRES 1 B 489 VAL LEU ILE ARG LYS GLU VAL ASP LEU LEU SER LEU LYS SEQRES 2 B 489 GLU ALA ASN ALA ILE LYS ASP ALA LEU TYR LYS LEU GLN SEQRES 3 B 489 ASN ASP HIS SER LYS GLY GLY PHE GLU GLU ILE ALA GLY SEQRES 4 B 489 TYR HIS GLY TYR PRO ASN LYS CYS PRO GLU LYS GLY ASP SEQRES 5 B 489 ASP LYS TYR PRO CYS CYS VAL HIS GLY MET PRO ILE PHE SEQRES 6 B 489 PRO HIS TRP HIS ARG LEU HIS THR ILE GLN MET GLU ARG SEQRES 7 B 489 ALA LEU LYS ASN HIS GLY SER GLN ILE GLY ILE PRO TYR SEQRES 8 B 489 TRP ASN TRP THR LYS ARG MET SER SER ILE PRO ALA PHE SEQRES 9 B 489 PHE GLY ASP ASP SER ASN ASN ASN PRO PHE TYR LYS TYR SEQRES 10 B 489 HIS ILE ARG ALA VAL ASN GLN TYR THR THR ARG ASP VAL SEQRES 11 B 489 ASP VAL GLU LEU PHE ASN GLN THR LYS PHE GLY GLU TYR SEQRES 12 B 489 ASP TYR LEU TYR TYR LEU THR LEU GLN VAL LEU GLU GLU SEQRES 13 B 489 ASN SER PHE CYS ASP PHE GLU VAL GLN TYR GLU ILE LEU SEQRES 14 B 489 HIS ASN ALA VAL HIS ALA TRP LEU GLY GLY ALA GLY LYS SEQRES 15 B 489 TYR SER MET SER THR LEU GLU TYR SER ALA TYR ASP PRO SEQRES 16 B 489 VAL PHE MET ILE HIS HIS SER SER LEU ASP ARG ILE TRP SEQRES 17 B 489 ILE LEU TRP GLN GLN LEU GLN LYS ARG ARG MET LYS PRO SEQRES 18 B 489 TYR TYR ALA ALA ASP CYS ALA GLY ASP LEU MET LYS PHE SEQRES 19 B 489 PRO MET HIS PRO PHE SER TYR LYS SER GLU ASN GLU ASP SEQRES 20 B 489 GLU PHE THR ARG VAL ASN SER VAL PRO ASN ILE VAL PHE SEQRES 21 B 489 ASP HIS TYR LYS PHE ASN TYR ASP TYR ASP ASN MET ARG SEQRES 22 B 489 ILE ARG GLY HIS ASP ILE ASN GLU LEU GLU ALA ILE ILE SEQRES 23 B 489 ASN GLU LEU ARG ASN LYS ASP ARG ILE PHE ALA GLY PHE SEQRES 24 B 489 VAL LEU SER GLY ILE ARG ILE THR ALA THR VAL LYS VAL SEQRES 25 B 489 PHE ILE HIS GLY THR GLY ALA ASP HIS GLU GLU PHE ALA SEQRES 26 B 489 GLY LYS PHE ALA ILE LEU GLY GLY GLU LYS GLU MET PRO SEQRES 27 B 489 TRP ALA TYR GLU ARG LEU LEU LYS LEU ASP ILE THR ASP SEQRES 28 B 489 ALA VAL HIS HIS LEU HIS LEU LYS ASP GLU GLU ILE ARG SEQRES 29 B 489 PHE ARG MET GLU VAL THR TYR TYR ASN GLY VAL PRO VAL SEQRES 30 B 489 SER THR LYS LEU ALA ASP PRO LEU ILE VAL HIS ARG PRO SEQRES 31 B 489 ALA HIS ALA SER HIS ASP ILE LEU VAL ILE PRO VAL GLY SEQRES 32 B 489 LYS GLY HIS GLU LEU PRO PRO LYS VAL VAL VAL LYS SER SEQRES 33 B 489 GLY THR LYS ILE GLU PHE THR PRO ILE ASP SER SER VAL SEQRES 34 B 489 ASP ARG ALA MET VAL GLU LEU GLY SER PHE THR ALA MET SEQRES 35 B 489 ALA LYS CYS ILE VAL PRO PRO PHE THR TYR ASN ALA PHE SEQRES 36 B 489 GLU LEU ASN LYS VAL TYR SER VAL ASP HIS GLY ASP TYR SEQRES 37 B 489 TYR ILE THR ALA GLY THR HIS GLU LEU CYS GLU GLN ASN SEQRES 38 B 489 VAL ARG LEU ASN VAL HIS VAL GLU SEQRES 1 C 489 VAL LEU ILE ARG LYS GLU VAL ASP LEU LEU SER LEU LYS SEQRES 2 C 489 GLU ALA ASN ALA ILE LYS ASP ALA LEU TYR LYS LEU GLN SEQRES 3 C 489 ASN ASP HIS SER LYS GLY GLY PHE GLU GLU ILE ALA GLY SEQRES 4 C 489 TYR HIS GLY TYR PRO ASN LYS CYS PRO GLU LYS GLY ASP SEQRES 5 C 489 ASP LYS TYR PRO CYS CYS VAL HIS GLY MET PRO ILE PHE SEQRES 6 C 489 PRO HIS TRP HIS ARG LEU HIS THR ILE GLN MET GLU ARG SEQRES 7 C 489 ALA LEU LYS ASN HIS GLY SER GLN ILE GLY ILE PRO TYR SEQRES 8 C 489 TRP ASN TRP THR LYS ARG MET SER SER ILE PRO ALA PHE SEQRES 9 C 489 PHE GLY ASP ASP SER ASN ASN ASN PRO PHE TYR LYS TYR SEQRES 10 C 489 HIS ILE ARG ALA VAL ASN GLN TYR THR THR ARG ASP VAL SEQRES 11 C 489 ASP VAL GLU LEU PHE ASN GLN THR LYS PHE GLY GLU TYR SEQRES 12 C 489 ASP TYR LEU TYR TYR LEU THR LEU GLN VAL LEU GLU GLU SEQRES 13 C 489 ASN SER PHE CYS ASP PHE GLU VAL GLN TYR GLU ILE LEU SEQRES 14 C 489 HIS ASN ALA VAL HIS ALA TRP LEU GLY GLY ALA GLY LYS SEQRES 15 C 489 TYR SER MET SER THR LEU GLU TYR SER ALA TYR ASP PRO SEQRES 16 C 489 VAL PHE MET ILE HIS HIS SER SER LEU ASP ARG ILE TRP SEQRES 17 C 489 ILE LEU TRP GLN GLN LEU GLN LYS ARG ARG MET LYS PRO SEQRES 18 C 489 TYR TYR ALA ALA ASP CYS ALA GLY ASP LEU MET LYS PHE SEQRES 19 C 489 PRO MET HIS PRO PHE SER TYR LYS SER GLU ASN GLU ASP SEQRES 20 C 489 GLU PHE THR ARG VAL ASN SER VAL PRO ASN ILE VAL PHE SEQRES 21 C 489 ASP HIS TYR LYS PHE ASN TYR ASP TYR ASP ASN MET ARG SEQRES 22 C 489 ILE ARG GLY HIS ASP ILE ASN GLU LEU GLU ALA ILE ILE SEQRES 23 C 489 ASN GLU LEU ARG ASN LYS ASP ARG ILE PHE ALA GLY PHE SEQRES 24 C 489 VAL LEU SER GLY ILE ARG ILE THR ALA THR VAL LYS VAL SEQRES 25 C 489 PHE ILE HIS GLY THR GLY ALA ASP HIS GLU GLU PHE ALA SEQRES 26 C 489 GLY LYS PHE ALA ILE LEU GLY GLY GLU LYS GLU MET PRO SEQRES 27 C 489 TRP ALA TYR GLU ARG LEU LEU LYS LEU ASP ILE THR ASP SEQRES 28 C 489 ALA VAL HIS HIS LEU HIS LEU LYS ASP GLU GLU ILE ARG SEQRES 29 C 489 PHE ARG MET GLU VAL THR TYR TYR ASN GLY VAL PRO VAL SEQRES 30 C 489 SER THR LYS LEU ALA ASP PRO LEU ILE VAL HIS ARG PRO SEQRES 31 C 489 ALA HIS ALA SER HIS ASP ILE LEU VAL ILE PRO VAL GLY SEQRES 32 C 489 LYS GLY HIS GLU LEU PRO PRO LYS VAL VAL VAL LYS SER SEQRES 33 C 489 GLY THR LYS ILE GLU PHE THR PRO ILE ASP SER SER VAL SEQRES 34 C 489 ASP ARG ALA MET VAL GLU LEU GLY SER PHE THR ALA MET SEQRES 35 C 489 ALA LYS CYS ILE VAL PRO PRO PHE THR TYR ASN ALA PHE SEQRES 36 C 489 GLU LEU ASN LYS VAL TYR SER VAL ASP HIS GLY ASP TYR SEQRES 37 C 489 TYR ILE THR ALA GLY THR HIS GLU LEU CYS GLU GLN ASN SEQRES 38 C 489 VAL ARG LEU ASN VAL HIS VAL GLU HET MAN A 501 24 HET EOH A 502 9 HET CU A 503 1 HET CU A 504 1 HET OH A 505 2 HET MAN B 501 24 HET EOH B 502 9 HET CU B 503 1 HET CU B 504 1 HET O B 505 1 HET O B 506 1 HET MAN C 501 24 HET EOH C 502 9 HET CU C 503 1 HET CU C 504 1 HET OH C 505 2 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EOH ETHANOL HETNAM CU COPPER (II) ION HETNAM OH HYDROXIDE ION HETNAM O OXYGEN ATOM HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 MAN 3(C6 H12 O6) FORMUL 5 EOH 3(C2 H6 O) FORMUL 6 CU 6(CU 2+) FORMUL 8 OH 2(H O 1-) FORMUL 13 O 2(O) FORMUL 20 HOH *1103(H2 O) HELIX 1 AA1 GLU A 15 LEU A 19 5 5 HELIX 2 AA2 SER A 20 ASN A 36 1 17 HELIX 3 AA3 GLY A 42 GLY A 48 1 7 HELIX 4 AA4 ILE A 73 HIS A 92 1 20 HELIX 5 AA5 PRO A 111 ASP A 116 1 6 HELIX 6 AA6 ASP A 117 ASN A 121 5 5 HELIX 7 AA7 ASP A 140 ASN A 145 5 6 HELIX 8 AA8 TYR A 154 GLU A 165 1 12 HELIX 9 AA9 SER A 167 GLY A 188 1 22 HELIX 10 AB1 TYR A 199 ASP A 203 5 5 HELIX 11 AB2 PRO A 204 MET A 228 1 25 HELIX 12 AB3 ASP A 256 ASN A 262 1 7 HELIX 13 AB4 VAL A 264 PHE A 269 1 6 HELIX 14 AB5 ASP A 270 PHE A 274 5 5 HELIX 15 AB6 ASP A 287 ARG A 299 1 13 HELIX 16 AB7 ILE A 358 LEU A 365 1 8 HELIX 17 AB8 LYS A 368 ILE A 372 5 5 HELIX 18 AB9 SER A 447 LYS A 453 1 7 HELIX 19 AC1 THR A 483 GLU A 488 1 6 HELIX 20 AC2 SER B 20 ASP B 37 1 18 HELIX 21 AC3 GLY B 42 GLY B 48 1 7 HELIX 22 AC4 ILE B 73 HIS B 92 1 20 HELIX 23 AC5 PRO B 111 ASP B 116 1 6 HELIX 24 AC6 ASP B 117 ASN B 121 5 5 HELIX 25 AC7 ASP B 140 ASN B 145 5 6 HELIX 26 AC8 TYR B 154 GLU B 165 1 12 HELIX 27 AC9 SER B 167 GLY B 188 1 22 HELIX 28 AD1 TYR B 199 ASP B 203 5 5 HELIX 29 AD2 PRO B 204 ARG B 227 1 24 HELIX 30 AD3 ASP B 239 PHE B 243 5 5 HELIX 31 AD4 ASP B 256 ASN B 262 1 7 HELIX 32 AD5 VAL B 264 PHE B 269 1 6 HELIX 33 AD6 ASP B 270 PHE B 274 5 5 HELIX 34 AD7 ASP B 287 ARG B 299 1 13 HELIX 35 AD8 ILE B 358 HIS B 366 1 9 HELIX 36 AD9 LYS B 368 ILE B 372 5 5 HELIX 37 AE1 SER B 447 CYS B 454 1 8 HELIX 38 AE2 THR B 483 GLN B 489 1 7 HELIX 39 AE3 GLU C 15 LEU C 19 5 5 HELIX 40 AE4 SER C 20 ASP C 37 1 18 HELIX 41 AE5 GLY C 42 GLY C 48 1 7 HELIX 42 AE6 ILE C 73 HIS C 92 1 20 HELIX 43 AE7 PRO C 111 ASP C 116 1 6 HELIX 44 AE8 ASP C 117 ASN C 121 5 5 HELIX 45 AE9 ASP C 140 ASN C 145 5 6 HELIX 46 AF1 TYR C 154 GLU C 165 1 12 HELIX 47 AF2 SER C 167 GLY C 188 1 22 HELIX 48 AF3 TYR C 199 ASP C 203 5 5 HELIX 49 AF4 PRO C 204 ARG C 227 1 24 HELIX 50 AF5 ASP C 256 ASN C 262 1 7 HELIX 51 AF6 VAL C 264 PHE C 269 1 6 HELIX 52 AF7 ASP C 270 PHE C 274 5 5 HELIX 53 AF8 ASP C 287 ARG C 299 1 13 HELIX 54 AF9 ILE C 358 HIS C 366 1 9 HELIX 55 AG1 LYS C 368 ILE C 372 5 5 HELIX 56 AG2 SER C 447 LYS C 453 1 7 HELIX 57 AG3 THR C 483 GLU C 488 1 6 SHEET 1 AA1 2 LEU A 11 ARG A 13 0 SHEET 2 AA1 2 TYR A 276 TYR A 278 1 O ASP A 277 N ARG A 13 SHEET 1 AA2 2 HIS A 127 ILE A 128 0 SHEET 2 AA2 2 GLN A 133 TYR A 134 -1 O GLN A 133 N ILE A 128 SHEET 1 AA3 2 LYS A 148 PHE A 149 0 SHEET 2 AA3 2 TYR A 152 ASP A 153 -1 O TYR A 152 N PHE A 149 SHEET 1 AA4 6 LEU A 354 ASP A 357 0 SHEET 2 AA4 6 ARG A 303 PHE A 308 -1 N PHE A 308 O LEU A 354 SHEET 3 AA4 6 LEU A 394 ARG A 398 -1 O LEU A 394 N GLY A 307 SHEET 4 AA4 6 ILE A 406 VAL A 411 -1 O VAL A 408 N ILE A 395 SHEET 5 AA4 6 LYS A 428 PRO A 433 1 O LYS A 428 N LEU A 407 SHEET 6 AA4 6 TYR A 470 SER A 471 -1 O TYR A 470 N ILE A 429 SHEET 1 AA5 3 GLU A 332 ILE A 339 0 SHEET 2 AA5 3 ALA A 317 HIS A 324 -1 N VAL A 321 O ALA A 334 SHEET 3 AA5 3 ARG A 373 TYR A 380 -1 O ARG A 375 N PHE A 322 SHEET 1 AA6 5 LYS A 420 VAL A 422 0 SHEET 2 AA6 5 ARG A 492 HIS A 496 1 O HIS A 496 N VAL A 421 SHEET 3 AA6 5 ASP A 476 THR A 480 -1 N ILE A 479 O LEU A 493 SHEET 4 AA6 5 MET A 442 GLU A 444 -1 N VAL A 443 O THR A 480 SHEET 5 AA6 5 ALA A 463 PHE A 464 -1 O PHE A 464 N MET A 442 SHEET 1 AA7 2 LEU B 11 ARG B 13 0 SHEET 2 AA7 2 TYR B 276 TYR B 278 1 O ASP B 277 N ARG B 13 SHEET 1 AA8 2 HIS B 127 ILE B 128 0 SHEET 2 AA8 2 GLN B 133 TYR B 134 -1 O GLN B 133 N ILE B 128 SHEET 1 AA9 2 LYS B 148 PHE B 149 0 SHEET 2 AA9 2 TYR B 152 ASP B 153 -1 O TYR B 152 N PHE B 149 SHEET 1 AB1 6 LEU B 354 ASP B 357 0 SHEET 2 AB1 6 ARG B 303 PHE B 308 -1 N ALA B 306 O LEU B 356 SHEET 3 AB1 6 LEU B 394 ARG B 398 -1 O ARG B 398 N ARG B 303 SHEET 4 AB1 6 ILE B 406 VAL B 411 -1 O VAL B 408 N ILE B 395 SHEET 5 AB1 6 LYS B 428 PRO B 433 1 O GLU B 430 N ILE B 409 SHEET 6 AB1 6 TYR B 470 SER B 471 -1 O TYR B 470 N ILE B 429 SHEET 1 AB2 3 GLU B 332 ILE B 339 0 SHEET 2 AB2 3 ALA B 317 HIS B 324 -1 N VAL B 321 O ALA B 334 SHEET 3 AB2 3 ARG B 373 TYR B 380 -1 O GLU B 377 N LYS B 320 SHEET 1 AB3 5 LYS B 420 VAL B 423 0 SHEET 2 AB3 5 ARG B 492 VAL B 497 1 O HIS B 496 N VAL B 421 SHEET 3 AB3 5 GLY B 475 THR B 480 -1 N GLY B 475 O VAL B 497 SHEET 4 AB3 5 MET B 442 GLU B 444 -1 N VAL B 443 O THR B 480 SHEET 5 AB3 5 ALA B 463 PHE B 464 -1 O PHE B 464 N MET B 442 SHEET 1 AB4 2 LEU C 11 ARG C 13 0 SHEET 2 AB4 2 TYR C 276 TYR C 278 1 O ASP C 277 N ARG C 13 SHEET 1 AB5 2 LYS C 148 PHE C 149 0 SHEET 2 AB5 2 TYR C 152 ASP C 153 -1 O TYR C 152 N PHE C 149 SHEET 1 AB6 6 LEU C 354 ASP C 357 0 SHEET 2 AB6 6 ARG C 303 PHE C 308 -1 N ALA C 306 O LEU C 356 SHEET 3 AB6 6 LEU C 394 ARG C 398 -1 O LEU C 394 N GLY C 307 SHEET 4 AB6 6 ILE C 406 VAL C 411 -1 O VAL C 408 N ILE C 395 SHEET 5 AB6 6 LYS C 428 PRO C 433 1 O LYS C 428 N LEU C 407 SHEET 6 AB6 6 VAL C 469 SER C 471 -1 O TYR C 470 N ILE C 429 SHEET 1 AB7 3 GLU C 332 ILE C 339 0 SHEET 2 AB7 3 ALA C 317 HIS C 324 -1 N VAL C 321 O ALA C 334 SHEET 3 AB7 3 ARG C 373 TYR C 380 -1 O ARG C 375 N PHE C 322 SHEET 1 AB8 4 LYS C 420 VAL C 423 0 SHEET 2 AB8 4 ARG C 492 VAL C 497 1 O HIS C 496 N VAL C 421 SHEET 3 AB8 4 GLY C 475 THR C 480 -1 N GLY C 475 O VAL C 497 SHEET 4 AB8 4 VAL C 443 GLU C 444 -1 N VAL C 443 O THR C 480 SSBOND 1 CYS A 56 CYS A 66 1555 1555 2.08 SSBOND 2 CYS A 169 CYS A 236 1555 1555 2.04 SSBOND 3 CYS A 454 CYS A 487 1555 1555 2.06 SSBOND 4 CYS B 56 CYS B 66 1555 1555 2.05 SSBOND 5 CYS B 169 CYS B 236 1555 1555 2.04 SSBOND 6 CYS B 454 CYS B 487 1555 1555 2.07 SSBOND 7 CYS C 56 CYS C 66 1555 1555 2.08 SSBOND 8 CYS C 169 CYS C 236 1555 1555 2.04 SSBOND 9 CYS C 454 CYS C 487 1555 1555 2.07 LINK NE2 HIS A 50 CU CU A 503 1555 1555 1.98 LINK NE2 HIS A 69 CU CU A 503 1555 1555 2.21 LINK NE2 HIS A 78 CU CU A 503 1555 1555 2.12 LINK NE2 HIS A 179 CU CU A 504 1555 1555 2.05 LINK NE2 HIS A 183 CU CU A 504 1555 1555 2.24 LINK NE2 HIS A 210 CU CU A 504 1555 1555 2.04 LINK CU CU A 503 O OH A 505 1555 1555 1.93 LINK CU CU A 504 O OH A 505 1555 1555 2.02 LINK NE2 HIS B 50 CU CU B 503 1555 1555 1.95 LINK NE2 HIS B 69 CU CU B 503 1555 1555 2.16 LINK NE2 HIS B 78 CU CU B 503 1555 1555 2.12 LINK NE2 HIS B 179 CU CU B 504 1555 1555 2.13 LINK NE2 HIS B 183 CU CU B 504 1555 1555 2.20 LINK NE2 HIS B 210 CU CU B 504 1555 1555 2.04 LINK CU CU B 503 O O B 506 1555 1555 1.96 LINK CU CU B 504 O O B 506 1555 1555 2.33 LINK NE2 HIS C 50 CU CU C 503 1555 1555 2.07 LINK NE2 HIS C 69 CU CU C 503 1555 1555 2.19 LINK NE2 HIS C 78 CU CU C 503 1555 1555 2.04 LINK NE2 HIS C 179 CU CU C 504 1555 1555 2.34 LINK NE2 HIS C 183 CU CU C 504 1555 1555 2.28 LINK NE2 HIS C 210 CU CU C 504 1555 1555 2.01 LINK CU CU C 503 O OH C 505 1555 1555 2.08 LINK CU CU C 504 O OH C 505 1555 1555 2.03 CISPEP 1 TYR A 52 PRO A 53 0 8.68 CISPEP 2 HIS A 246 PRO A 247 0 1.67 CISPEP 3 TYR B 52 PRO B 53 0 11.07 CISPEP 4 CYS B 56 PRO B 57 0 4.83 CISPEP 5 HIS B 246 PRO B 247 0 3.24 CISPEP 6 TYR C 52 PRO C 53 0 8.65 CISPEP 7 HIS C 246 PRO C 247 0 1.60 CRYST1 168.573 117.675 97.588 90.00 96.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005932 0.000000 0.000690 0.00000 SCALE2 0.000000 0.008498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010316 0.00000 CONECT 32211959 CONECT 368 440 CONECT 440 368 CONECT 46311959 CONECT 54211959 CONECT 1317 1880 CONECT 140811960 CONECT 143811960 CONECT 165111960 CONECT 1880 1317 CONECT 3618 3885 CONECT 3885 3618 CONECT 430111996 CONECT 4347 4419 CONECT 4419 4347 CONECT 444211996 CONECT 452111996 CONECT 5296 5859 CONECT 538711997 CONECT 541711997 CONECT 563011997 CONECT 5859 5296 CONECT 7596 7863 CONECT 7863 7596 CONECT 827912033 CONECT 8325 8397 CONECT 8397 8325 CONECT 842012033 CONECT 849912033 CONECT 9274 9827 CONECT 936512034 CONECT 939512034 CONECT 960812034 CONECT 9827 9274 CONECT1156411831 CONECT1183111564 CONECT1192611927119321193611938 CONECT1192711926119281193311939 CONECT1192811927119291193411940 CONECT1192911928119301193511941 CONECT1193011929119311193611942 CONECT1193111930119371194311944 CONECT119321192611945 CONECT119331192711946 CONECT119341192811947 CONECT119351192911948 CONECT119361192611930 CONECT119371193111949 CONECT1193811926 CONECT1193911927 CONECT1194011928 CONECT1194111929 CONECT1194211930 CONECT1194311931 CONECT1194411931 CONECT1194511932 CONECT1194611933 CONECT1194711934 CONECT1194811935 CONECT1194911937 CONECT1195011951119521195311954 CONECT1195111950119551195611957 CONECT119521195011958 CONECT1195311950 CONECT1195411950 CONECT1195511951 CONECT1195611951 CONECT1195711951 CONECT1195811952 CONECT11959 322 463 54211961 CONECT11960 1408 1438 165111961 CONECT11961119591196011962 CONECT1196211961 CONECT1196311964119691197311975 CONECT1196411963119651197011976 CONECT1196511964119661197111977 CONECT1196611965119671197211978 CONECT1196711966119681197311979 CONECT1196811967119741198011981 CONECT119691196311982 CONECT119701196411983 CONECT119711196511984 CONECT119721196611985 CONECT119731196311967 CONECT119741196811986 CONECT1197511963 CONECT1197611964 CONECT1197711965 CONECT1197811966 CONECT1197911967 CONECT1198011968 CONECT1198111968 CONECT1198211969 CONECT1198311970 CONECT1198411971 CONECT1198511972 CONECT1198611974 CONECT1198711988119891199011991 CONECT1198811987119921199311994 CONECT119891198711995 CONECT1199011987 CONECT1199111987 CONECT1199211988 CONECT1199311988 CONECT1199411988 CONECT1199511989 CONECT11996 4301 4442 452111999 CONECT11997 5387 5417 563011999 CONECT119991199611997 CONECT1200012001120061201012012 CONECT1200112000120021200712013 CONECT1200212001120031200812014 CONECT1200312002120041200912015 CONECT1200412003120051201012016 CONECT1200512004120111201712018 CONECT120061200012019 CONECT120071200112020 CONECT120081200212021 CONECT120091200312022 CONECT120101200012004 CONECT120111200512023 CONECT1201212000 CONECT1201312001 CONECT1201412002 CONECT1201512003 CONECT1201612004 CONECT1201712005 CONECT1201812005 CONECT1201912006 CONECT1202012007 CONECT1202112008 CONECT1202212009 CONECT1202312011 CONECT1202412025120261202712028 CONECT1202512024120291203012031 CONECT120261202412032 CONECT1202712024 CONECT1202812024 CONECT1202912025 CONECT1203012025 CONECT1203112025 CONECT1203212026 CONECT12033 8279 8420 849912035 CONECT12034 9365 9395 960812035 CONECT12035120331203412036 CONECT1203612035 MASTER 507 0 16 57 57 0 0 613080 3 146 114 END