data_9L1U # _entry.id 9L1U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9L1U pdb_00009l1u 10.2210/pdb9l1u/pdb WWPDB D_1300054341 ? ? EMDB EMD-62755 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-12-17 ? 2 'EM metadata' 1 0 2025-12-17 ? 3 FSC 1 0 2025-12-17 ? 4 'Half map' 1 0 2025-12-17 1 5 'Half map' 1 0 2025-12-17 2 6 Image 1 0 2025-12-17 ? 7 'Primary map' 1 0 2025-12-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9L1U _pdbx_database_status.recvd_initial_deposition_date 2024-12-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Pentraxin Domain of PTX3 Dimer, Conformation 2' _pdbx_database_related.db_id EMD-62755 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email zhanghw@sustech.edu.cn _pdbx_contact_author.name_first Huawei _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5625-5809 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guo, H.H.' 1 0009-0002-6304-5348 'Zhang, H.W.' 2 0000-0002-5625-5809 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Pentraxin Domain of PTX3 Dimer,conformation 2' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, H.H.' 1 0009-0002-6304-5348 primary 'Zhang, H.W.' 2 0000-0002-5625-5809 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Pentraxin-related protein PTX3' _entity.formula_weight 22520.561 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Pentaxin-related protein PTX3,Tumor necrosis factor alpha-induced protein 5,TNF alpha-induced protein 5,Tumor necrosis factor-inducible gene 14 protein,TSG-14 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEEN KLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLT GFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS ; _entity_poly.pdbx_seq_one_letter_code_can ;LPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEEN KLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLT GFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS ; _entity_poly.pdbx_strand_id A,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 ALA n 1 4 GLY n 1 5 CYS n 1 6 GLU n 1 7 THR n 1 8 ALA n 1 9 ILE n 1 10 LEU n 1 11 PHE n 1 12 PRO n 1 13 MET n 1 14 ARG n 1 15 SER n 1 16 LYS n 1 17 LYS n 1 18 ILE n 1 19 PHE n 1 20 GLY n 1 21 SER n 1 22 VAL n 1 23 HIS n 1 24 PRO n 1 25 VAL n 1 26 ARG n 1 27 PRO n 1 28 MET n 1 29 ARG n 1 30 LEU n 1 31 GLU n 1 32 SER n 1 33 PHE n 1 34 SER n 1 35 ALA n 1 36 CYS n 1 37 ILE n 1 38 TRP n 1 39 VAL n 1 40 LYS n 1 41 ALA n 1 42 THR n 1 43 ASP n 1 44 VAL n 1 45 LEU n 1 46 ASN n 1 47 LYS n 1 48 THR n 1 49 ILE n 1 50 LEU n 1 51 PHE n 1 52 SER n 1 53 TYR n 1 54 GLY n 1 55 THR n 1 56 LYS n 1 57 ARG n 1 58 ASN n 1 59 PRO n 1 60 TYR n 1 61 GLU n 1 62 ILE n 1 63 GLN n 1 64 LEU n 1 65 TYR n 1 66 LEU n 1 67 SER n 1 68 TYR n 1 69 GLN n 1 70 SER n 1 71 ILE n 1 72 VAL n 1 73 PHE n 1 74 VAL n 1 75 VAL n 1 76 GLY n 1 77 GLY n 1 78 GLU n 1 79 GLU n 1 80 ASN n 1 81 LYS n 1 82 LEU n 1 83 VAL n 1 84 ALA n 1 85 GLU n 1 86 ALA n 1 87 MET n 1 88 VAL n 1 89 SER n 1 90 LEU n 1 91 GLY n 1 92 ARG n 1 93 TRP n 1 94 THR n 1 95 HIS n 1 96 LEU n 1 97 CYS n 1 98 GLY n 1 99 THR n 1 100 TRP n 1 101 ASN n 1 102 SER n 1 103 GLU n 1 104 GLU n 1 105 GLY n 1 106 LEU n 1 107 THR n 1 108 SER n 1 109 LEU n 1 110 TRP n 1 111 VAL n 1 112 ASN n 1 113 GLY n 1 114 GLU n 1 115 LEU n 1 116 ALA n 1 117 ALA n 1 118 THR n 1 119 THR n 1 120 VAL n 1 121 GLU n 1 122 MET n 1 123 ALA n 1 124 THR n 1 125 GLY n 1 126 HIS n 1 127 ILE n 1 128 VAL n 1 129 PRO n 1 130 GLU n 1 131 GLY n 1 132 GLY n 1 133 ILE n 1 134 LEU n 1 135 GLN n 1 136 ILE n 1 137 GLY n 1 138 GLN n 1 139 GLU n 1 140 LYS n 1 141 ASN n 1 142 GLY n 1 143 CYS n 1 144 CYS n 1 145 VAL n 1 146 GLY n 1 147 GLY n 1 148 GLY n 1 149 PHE n 1 150 ASP n 1 151 GLU n 1 152 THR n 1 153 LEU n 1 154 ALA n 1 155 PHE n 1 156 SER n 1 157 GLY n 1 158 ARG n 1 159 LEU n 1 160 THR n 1 161 GLY n 1 162 PHE n 1 163 ASN n 1 164 ILE n 1 165 TRP n 1 166 ASP n 1 167 SER n 1 168 VAL n 1 169 LEU n 1 170 SER n 1 171 ASN n 1 172 GLU n 1 173 GLU n 1 174 ILE n 1 175 ARG n 1 176 GLU n 1 177 THR n 1 178 GLY n 1 179 GLY n 1 180 ALA n 1 181 GLU n 1 182 SER n 1 183 CYS n 1 184 HIS n 1 185 ILE n 1 186 ARG n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 VAL n 1 191 GLY n 1 192 TRP n 1 193 GLY n 1 194 VAL n 1 195 THR n 1 196 GLU n 1 197 ILE n 1 198 GLN n 1 199 PRO n 1 200 HIS n 1 201 GLY n 1 202 GLY n 1 203 ALA n 1 204 GLN n 1 205 TYR n 1 206 VAL n 1 207 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 207 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PTX3, TNFAIP5, TSG14' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name Mammalia _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 40674 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 175 175 LEU LEU A . n A 1 2 PRO 2 176 176 PRO PRO A . n A 1 3 ALA 3 177 177 ALA ALA A . n A 1 4 GLY 4 178 178 GLY GLY A . n A 1 5 CYS 5 179 179 CYS CYS A . n A 1 6 GLU 6 180 180 GLU GLU A . n A 1 7 THR 7 181 181 THR THR A . n A 1 8 ALA 8 182 182 ALA ALA A . n A 1 9 ILE 9 183 183 ILE ILE A . n A 1 10 LEU 10 184 184 LEU LEU A . n A 1 11 PHE 11 185 185 PHE PHE A . n A 1 12 PRO 12 186 186 PRO PRO A . n A 1 13 MET 13 187 187 MET MET A . n A 1 14 ARG 14 188 188 ARG ARG A . n A 1 15 SER 15 189 189 SER SER A . n A 1 16 LYS 16 190 190 LYS LYS A . n A 1 17 LYS 17 191 191 LYS LYS A . n A 1 18 ILE 18 192 192 ILE ILE A . n A 1 19 PHE 19 193 193 PHE PHE A . n A 1 20 GLY 20 194 194 GLY GLY A . n A 1 21 SER 21 195 195 SER SER A . n A 1 22 VAL 22 196 196 VAL VAL A . n A 1 23 HIS 23 197 197 HIS HIS A . n A 1 24 PRO 24 198 198 PRO PRO A . n A 1 25 VAL 25 199 199 VAL VAL A . n A 1 26 ARG 26 200 200 ARG ARG A . n A 1 27 PRO 27 201 201 PRO PRO A . n A 1 28 MET 28 202 202 MET MET A . n A 1 29 ARG 29 203 203 ARG ARG A . n A 1 30 LEU 30 204 204 LEU LEU A . n A 1 31 GLU 31 205 205 GLU GLU A . n A 1 32 SER 32 206 206 SER SER A . n A 1 33 PHE 33 207 207 PHE PHE A . n A 1 34 SER 34 208 208 SER SER A . n A 1 35 ALA 35 209 209 ALA ALA A . n A 1 36 CYS 36 210 210 CYS CYS A . n A 1 37 ILE 37 211 211 ILE ILE A . n A 1 38 TRP 38 212 212 TRP TRP A . n A 1 39 VAL 39 213 213 VAL VAL A . n A 1 40 LYS 40 214 214 LYS LYS A . n A 1 41 ALA 41 215 215 ALA ALA A . n A 1 42 THR 42 216 216 THR THR A . n A 1 43 ASP 43 217 217 ASP ASP A . n A 1 44 VAL 44 218 218 VAL VAL A . n A 1 45 LEU 45 219 219 LEU LEU A . n A 1 46 ASN 46 220 220 ASN ASN A . n A 1 47 LYS 47 221 221 LYS LYS A . n A 1 48 THR 48 222 222 THR THR A . n A 1 49 ILE 49 223 223 ILE ILE A . n A 1 50 LEU 50 224 224 LEU LEU A . n A 1 51 PHE 51 225 225 PHE PHE A . n A 1 52 SER 52 226 226 SER SER A . n A 1 53 TYR 53 227 227 TYR TYR A . n A 1 54 GLY 54 228 228 GLY GLY A . n A 1 55 THR 55 229 229 THR THR A . n A 1 56 LYS 56 230 230 LYS LYS A . n A 1 57 ARG 57 231 231 ARG ARG A . n A 1 58 ASN 58 232 232 ASN ASN A . n A 1 59 PRO 59 233 233 PRO PRO A . n A 1 60 TYR 60 234 234 TYR TYR A . n A 1 61 GLU 61 235 235 GLU GLU A . n A 1 62 ILE 62 236 236 ILE ILE A . n A 1 63 GLN 63 237 237 GLN GLN A . n A 1 64 LEU 64 238 238 LEU LEU A . n A 1 65 TYR 65 239 239 TYR TYR A . n A 1 66 LEU 66 240 240 LEU LEU A . n A 1 67 SER 67 241 241 SER SER A . n A 1 68 TYR 68 242 242 TYR TYR A . n A 1 69 GLN 69 243 243 GLN GLN A . n A 1 70 SER 70 244 244 SER SER A . n A 1 71 ILE 71 245 245 ILE ILE A . n A 1 72 VAL 72 246 246 VAL VAL A . n A 1 73 PHE 73 247 247 PHE PHE A . n A 1 74 VAL 74 248 248 VAL VAL A . n A 1 75 VAL 75 249 249 VAL VAL A . n A 1 76 GLY 76 250 250 GLY GLY A . n A 1 77 GLY 77 251 251 GLY GLY A . n A 1 78 GLU 78 252 252 GLU GLU A . n A 1 79 GLU 79 253 253 GLU GLU A . n A 1 80 ASN 80 254 254 ASN ASN A . n A 1 81 LYS 81 255 255 LYS LYS A . n A 1 82 LEU 82 256 256 LEU LEU A . n A 1 83 VAL 83 257 257 VAL VAL A . n A 1 84 ALA 84 258 258 ALA ALA A . n A 1 85 GLU 85 259 259 GLU GLU A . n A 1 86 ALA 86 260 260 ALA ALA A . n A 1 87 MET 87 261 261 MET MET A . n A 1 88 VAL 88 262 262 VAL VAL A . n A 1 89 SER 89 263 263 SER SER A . n A 1 90 LEU 90 264 264 LEU LEU A . n A 1 91 GLY 91 265 265 GLY GLY A . n A 1 92 ARG 92 266 266 ARG ARG A . n A 1 93 TRP 93 267 267 TRP TRP A . n A 1 94 THR 94 268 268 THR THR A . n A 1 95 HIS 95 269 269 HIS HIS A . n A 1 96 LEU 96 270 270 LEU LEU A . n A 1 97 CYS 97 271 271 CYS CYS A . n A 1 98 GLY 98 272 272 GLY GLY A . n A 1 99 THR 99 273 273 THR THR A . n A 1 100 TRP 100 274 274 TRP TRP A . n A 1 101 ASN 101 275 275 ASN ASN A . n A 1 102 SER 102 276 276 SER SER A . n A 1 103 GLU 103 277 277 GLU GLU A . n A 1 104 GLU 104 278 278 GLU GLU A . n A 1 105 GLY 105 279 279 GLY GLY A . n A 1 106 LEU 106 280 280 LEU LEU A . n A 1 107 THR 107 281 281 THR THR A . n A 1 108 SER 108 282 282 SER SER A . n A 1 109 LEU 109 283 283 LEU LEU A . n A 1 110 TRP 110 284 284 TRP TRP A . n A 1 111 VAL 111 285 285 VAL VAL A . n A 1 112 ASN 112 286 286 ASN ASN A . n A 1 113 GLY 113 287 287 GLY GLY A . n A 1 114 GLU 114 288 288 GLU GLU A . n A 1 115 LEU 115 289 289 LEU LEU A . n A 1 116 ALA 116 290 290 ALA ALA A . n A 1 117 ALA 117 291 291 ALA ALA A . n A 1 118 THR 118 292 292 THR THR A . n A 1 119 THR 119 293 293 THR THR A . n A 1 120 VAL 120 294 294 VAL VAL A . n A 1 121 GLU 121 295 295 GLU GLU A . n A 1 122 MET 122 296 296 MET MET A . n A 1 123 ALA 123 297 297 ALA ALA A . n A 1 124 THR 124 298 298 THR THR A . n A 1 125 GLY 125 299 299 GLY GLY A . n A 1 126 HIS 126 300 300 HIS HIS A . n A 1 127 ILE 127 301 301 ILE ILE A . n A 1 128 VAL 128 302 302 VAL VAL A . n A 1 129 PRO 129 303 303 PRO PRO A . n A 1 130 GLU 130 304 304 GLU GLU A . n A 1 131 GLY 131 305 305 GLY GLY A . n A 1 132 GLY 132 306 306 GLY GLY A . n A 1 133 ILE 133 307 307 ILE ILE A . n A 1 134 LEU 134 308 308 LEU LEU A . n A 1 135 GLN 135 309 309 GLN GLN A . n A 1 136 ILE 136 310 310 ILE ILE A . n A 1 137 GLY 137 311 311 GLY GLY A . n A 1 138 GLN 138 312 312 GLN GLN A . n A 1 139 GLU 139 313 313 GLU GLU A . n A 1 140 LYS 140 314 314 LYS LYS A . n A 1 141 ASN 141 315 315 ASN ASN A . n A 1 142 GLY 142 316 316 GLY GLY A . n A 1 143 CYS 143 317 317 CYS CYS A . n A 1 144 CYS 144 318 318 CYS CYS A . n A 1 145 VAL 145 319 319 VAL VAL A . n A 1 146 GLY 146 320 320 GLY GLY A . n A 1 147 GLY 147 321 321 GLY GLY A . n A 1 148 GLY 148 322 322 GLY GLY A . n A 1 149 PHE 149 323 323 PHE PHE A . n A 1 150 ASP 150 324 324 ASP ASP A . n A 1 151 GLU 151 325 325 GLU GLU A . n A 1 152 THR 152 326 326 THR THR A . n A 1 153 LEU 153 327 327 LEU LEU A . n A 1 154 ALA 154 328 328 ALA ALA A . n A 1 155 PHE 155 329 329 PHE PHE A . n A 1 156 SER 156 330 330 SER SER A . n A 1 157 GLY 157 331 331 GLY GLY A . n A 1 158 ARG 158 332 332 ARG ARG A . n A 1 159 LEU 159 333 333 LEU LEU A . n A 1 160 THR 160 334 334 THR THR A . n A 1 161 GLY 161 335 335 GLY GLY A . n A 1 162 PHE 162 336 336 PHE PHE A . n A 1 163 ASN 163 337 337 ASN ASN A . n A 1 164 ILE 164 338 338 ILE ILE A . n A 1 165 TRP 165 339 339 TRP TRP A . n A 1 166 ASP 166 340 340 ASP ASP A . n A 1 167 SER 167 341 341 SER SER A . n A 1 168 VAL 168 342 342 VAL VAL A . n A 1 169 LEU 169 343 343 LEU LEU A . n A 1 170 SER 170 344 344 SER SER A . n A 1 171 ASN 171 345 345 ASN ASN A . n A 1 172 GLU 172 346 346 GLU GLU A . n A 1 173 GLU 173 347 347 GLU GLU A . n A 1 174 ILE 174 348 348 ILE ILE A . n A 1 175 ARG 175 349 349 ARG ARG A . n A 1 176 GLU 176 350 350 GLU GLU A . n A 1 177 THR 177 351 351 THR THR A . n A 1 178 GLY 178 352 352 GLY GLY A . n A 1 179 GLY 179 353 353 GLY GLY A . n A 1 180 ALA 180 354 354 ALA ALA A . n A 1 181 GLU 181 355 355 GLU GLU A . n A 1 182 SER 182 356 356 SER SER A . n A 1 183 CYS 183 357 357 CYS CYS A . n A 1 184 HIS 184 358 358 HIS HIS A . n A 1 185 ILE 185 359 359 ILE ILE A . n A 1 186 ARG 186 360 360 ARG ARG A . n A 1 187 GLY 187 361 361 GLY GLY A . n A 1 188 ASN 188 362 362 ASN ASN A . n A 1 189 ILE 189 363 363 ILE ILE A . n A 1 190 VAL 190 364 364 VAL VAL A . n A 1 191 GLY 191 365 365 GLY GLY A . n A 1 192 TRP 192 366 366 TRP TRP A . n A 1 193 GLY 193 367 367 GLY GLY A . n A 1 194 VAL 194 368 368 VAL VAL A . n A 1 195 THR 195 369 369 THR THR A . n A 1 196 GLU 196 370 370 GLU GLU A . n A 1 197 ILE 197 371 371 ILE ILE A . n A 1 198 GLN 198 372 372 GLN GLN A . n A 1 199 PRO 199 373 373 PRO PRO A . n A 1 200 HIS 200 374 374 HIS HIS A . n A 1 201 GLY 201 375 375 GLY GLY A . n A 1 202 GLY 202 376 376 GLY GLY A . n A 1 203 ALA 203 377 377 ALA ALA A . n A 1 204 GLN 204 378 378 GLN GLN A . n A 1 205 TYR 205 379 379 TYR TYR A . n A 1 206 VAL 206 380 380 VAL VAL A . n A 1 207 SER 207 381 381 SER SER A . n B 1 1 LEU 1 175 175 LEU LEU H . n B 1 2 PRO 2 176 176 PRO PRO H . n B 1 3 ALA 3 177 177 ALA ALA H . n B 1 4 GLY 4 178 178 GLY GLY H . n B 1 5 CYS 5 179 179 CYS CYS H . n B 1 6 GLU 6 180 180 GLU GLU H . n B 1 7 THR 7 181 181 THR THR H . n B 1 8 ALA 8 182 182 ALA ALA H . n B 1 9 ILE 9 183 183 ILE ILE H . n B 1 10 LEU 10 184 184 LEU LEU H . n B 1 11 PHE 11 185 185 PHE PHE H . n B 1 12 PRO 12 186 186 PRO PRO H . n B 1 13 MET 13 187 187 MET MET H . n B 1 14 ARG 14 188 188 ARG ARG H . n B 1 15 SER 15 189 189 SER SER H . n B 1 16 LYS 16 190 190 LYS LYS H . n B 1 17 LYS 17 191 191 LYS LYS H . n B 1 18 ILE 18 192 192 ILE ILE H . n B 1 19 PHE 19 193 193 PHE PHE H . n B 1 20 GLY 20 194 194 GLY GLY H . n B 1 21 SER 21 195 195 SER SER H . n B 1 22 VAL 22 196 196 VAL VAL H . n B 1 23 HIS 23 197 197 HIS HIS H . n B 1 24 PRO 24 198 198 PRO PRO H . n B 1 25 VAL 25 199 199 VAL VAL H . n B 1 26 ARG 26 200 200 ARG ARG H . n B 1 27 PRO 27 201 201 PRO PRO H . n B 1 28 MET 28 202 202 MET MET H . n B 1 29 ARG 29 203 203 ARG ARG H . n B 1 30 LEU 30 204 204 LEU LEU H . n B 1 31 GLU 31 205 205 GLU GLU H . n B 1 32 SER 32 206 206 SER SER H . n B 1 33 PHE 33 207 207 PHE PHE H . n B 1 34 SER 34 208 208 SER SER H . n B 1 35 ALA 35 209 209 ALA ALA H . n B 1 36 CYS 36 210 210 CYS CYS H . n B 1 37 ILE 37 211 211 ILE ILE H . n B 1 38 TRP 38 212 212 TRP TRP H . n B 1 39 VAL 39 213 213 VAL VAL H . n B 1 40 LYS 40 214 214 LYS LYS H . n B 1 41 ALA 41 215 215 ALA ALA H . n B 1 42 THR 42 216 216 THR THR H . n B 1 43 ASP 43 217 217 ASP ASP H . n B 1 44 VAL 44 218 218 VAL VAL H . n B 1 45 LEU 45 219 219 LEU LEU H . n B 1 46 ASN 46 220 220 ASN ASN H . n B 1 47 LYS 47 221 221 LYS LYS H . n B 1 48 THR 48 222 222 THR THR H . n B 1 49 ILE 49 223 223 ILE ILE H . n B 1 50 LEU 50 224 224 LEU LEU H . n B 1 51 PHE 51 225 225 PHE PHE H . n B 1 52 SER 52 226 226 SER SER H . n B 1 53 TYR 53 227 227 TYR TYR H . n B 1 54 GLY 54 228 228 GLY GLY H . n B 1 55 THR 55 229 229 THR THR H . n B 1 56 LYS 56 230 230 LYS LYS H . n B 1 57 ARG 57 231 231 ARG ARG H . n B 1 58 ASN 58 232 232 ASN ASN H . n B 1 59 PRO 59 233 233 PRO PRO H . n B 1 60 TYR 60 234 234 TYR TYR H . n B 1 61 GLU 61 235 235 GLU GLU H . n B 1 62 ILE 62 236 236 ILE ILE H . n B 1 63 GLN 63 237 237 GLN GLN H . n B 1 64 LEU 64 238 238 LEU LEU H . n B 1 65 TYR 65 239 239 TYR TYR H . n B 1 66 LEU 66 240 240 LEU LEU H . n B 1 67 SER 67 241 241 SER SER H . n B 1 68 TYR 68 242 242 TYR TYR H . n B 1 69 GLN 69 243 243 GLN GLN H . n B 1 70 SER 70 244 244 SER SER H . n B 1 71 ILE 71 245 245 ILE ILE H . n B 1 72 VAL 72 246 246 VAL VAL H . n B 1 73 PHE 73 247 247 PHE PHE H . n B 1 74 VAL 74 248 248 VAL VAL H . n B 1 75 VAL 75 249 249 VAL VAL H . n B 1 76 GLY 76 250 250 GLY GLY H . n B 1 77 GLY 77 251 251 GLY GLY H . n B 1 78 GLU 78 252 252 GLU GLU H . n B 1 79 GLU 79 253 253 GLU GLU H . n B 1 80 ASN 80 254 254 ASN ASN H . n B 1 81 LYS 81 255 255 LYS LYS H . n B 1 82 LEU 82 256 256 LEU LEU H . n B 1 83 VAL 83 257 257 VAL VAL H . n B 1 84 ALA 84 258 258 ALA ALA H . n B 1 85 GLU 85 259 259 GLU GLU H . n B 1 86 ALA 86 260 260 ALA ALA H . n B 1 87 MET 87 261 261 MET MET H . n B 1 88 VAL 88 262 262 VAL VAL H . n B 1 89 SER 89 263 263 SER SER H . n B 1 90 LEU 90 264 264 LEU LEU H . n B 1 91 GLY 91 265 265 GLY GLY H . n B 1 92 ARG 92 266 266 ARG ARG H . n B 1 93 TRP 93 267 267 TRP TRP H . n B 1 94 THR 94 268 268 THR THR H . n B 1 95 HIS 95 269 269 HIS HIS H . n B 1 96 LEU 96 270 270 LEU LEU H . n B 1 97 CYS 97 271 271 CYS CYS H . n B 1 98 GLY 98 272 272 GLY GLY H . n B 1 99 THR 99 273 273 THR THR H . n B 1 100 TRP 100 274 274 TRP TRP H . n B 1 101 ASN 101 275 275 ASN ASN H . n B 1 102 SER 102 276 276 SER SER H . n B 1 103 GLU 103 277 277 GLU GLU H . n B 1 104 GLU 104 278 278 GLU GLU H . n B 1 105 GLY 105 279 279 GLY GLY H . n B 1 106 LEU 106 280 280 LEU LEU H . n B 1 107 THR 107 281 281 THR THR H . n B 1 108 SER 108 282 282 SER SER H . n B 1 109 LEU 109 283 283 LEU LEU H . n B 1 110 TRP 110 284 284 TRP TRP H . n B 1 111 VAL 111 285 285 VAL VAL H . n B 1 112 ASN 112 286 286 ASN ASN H . n B 1 113 GLY 113 287 287 GLY GLY H . n B 1 114 GLU 114 288 288 GLU GLU H . n B 1 115 LEU 115 289 289 LEU LEU H . n B 1 116 ALA 116 290 290 ALA ALA H . n B 1 117 ALA 117 291 291 ALA ALA H . n B 1 118 THR 118 292 292 THR THR H . n B 1 119 THR 119 293 293 THR THR H . n B 1 120 VAL 120 294 294 VAL VAL H . n B 1 121 GLU 121 295 295 GLU GLU H . n B 1 122 MET 122 296 296 MET MET H . n B 1 123 ALA 123 297 297 ALA ALA H . n B 1 124 THR 124 298 298 THR THR H . n B 1 125 GLY 125 299 299 GLY GLY H . n B 1 126 HIS 126 300 300 HIS HIS H . n B 1 127 ILE 127 301 301 ILE ILE H . n B 1 128 VAL 128 302 302 VAL VAL H . n B 1 129 PRO 129 303 303 PRO PRO H . n B 1 130 GLU 130 304 304 GLU GLU H . n B 1 131 GLY 131 305 305 GLY GLY H . n B 1 132 GLY 132 306 306 GLY GLY H . n B 1 133 ILE 133 307 307 ILE ILE H . n B 1 134 LEU 134 308 308 LEU LEU H . n B 1 135 GLN 135 309 309 GLN GLN H . n B 1 136 ILE 136 310 310 ILE ILE H . n B 1 137 GLY 137 311 311 GLY GLY H . n B 1 138 GLN 138 312 312 GLN GLN H . n B 1 139 GLU 139 313 313 GLU GLU H . n B 1 140 LYS 140 314 314 LYS LYS H . n B 1 141 ASN 141 315 315 ASN ASN H . n B 1 142 GLY 142 316 316 GLY GLY H . n B 1 143 CYS 143 317 317 CYS CYS H . n B 1 144 CYS 144 318 318 CYS CYS H . n B 1 145 VAL 145 319 319 VAL VAL H . n B 1 146 GLY 146 320 320 GLY GLY H . n B 1 147 GLY 147 321 321 GLY GLY H . n B 1 148 GLY 148 322 322 GLY GLY H . n B 1 149 PHE 149 323 323 PHE PHE H . n B 1 150 ASP 150 324 324 ASP ASP H . n B 1 151 GLU 151 325 325 GLU GLU H . n B 1 152 THR 152 326 326 THR THR H . n B 1 153 LEU 153 327 327 LEU LEU H . n B 1 154 ALA 154 328 328 ALA ALA H . n B 1 155 PHE 155 329 329 PHE PHE H . n B 1 156 SER 156 330 330 SER SER H . n B 1 157 GLY 157 331 331 GLY GLY H . n B 1 158 ARG 158 332 332 ARG ARG H . n B 1 159 LEU 159 333 333 LEU LEU H . n B 1 160 THR 160 334 334 THR THR H . n B 1 161 GLY 161 335 335 GLY GLY H . n B 1 162 PHE 162 336 336 PHE PHE H . n B 1 163 ASN 163 337 337 ASN ASN H . n B 1 164 ILE 164 338 338 ILE ILE H . n B 1 165 TRP 165 339 339 TRP TRP H . n B 1 166 ASP 166 340 340 ASP ASP H . n B 1 167 SER 167 341 341 SER SER H . n B 1 168 VAL 168 342 342 VAL VAL H . n B 1 169 LEU 169 343 343 LEU LEU H . n B 1 170 SER 170 344 344 SER SER H . n B 1 171 ASN 171 345 345 ASN ASN H . n B 1 172 GLU 172 346 346 GLU GLU H . n B 1 173 GLU 173 347 347 GLU GLU H . n B 1 174 ILE 174 348 348 ILE ILE H . n B 1 175 ARG 175 349 349 ARG ARG H . n B 1 176 GLU 176 350 350 GLU GLU H . n B 1 177 THR 177 351 351 THR THR H . n B 1 178 GLY 178 352 352 GLY GLY H . n B 1 179 GLY 179 353 353 GLY GLY H . n B 1 180 ALA 180 354 354 ALA ALA H . n B 1 181 GLU 181 355 355 GLU GLU H . n B 1 182 SER 182 356 356 SER SER H . n B 1 183 CYS 183 357 357 CYS CYS H . n B 1 184 HIS 184 358 358 HIS HIS H . n B 1 185 ILE 185 359 359 ILE ILE H . n B 1 186 ARG 186 360 360 ARG ARG H . n B 1 187 GLY 187 361 361 GLY GLY H . n B 1 188 ASN 188 362 362 ASN ASN H . n B 1 189 ILE 189 363 363 ILE ILE H . n B 1 190 VAL 190 364 364 VAL VAL H . n B 1 191 GLY 191 365 365 GLY GLY H . n B 1 192 TRP 192 366 366 TRP TRP H . n B 1 193 GLY 193 367 367 GLY GLY H . n B 1 194 VAL 194 368 368 VAL VAL H . n B 1 195 THR 195 369 369 THR THR H . n B 1 196 GLU 196 370 370 GLU GLU H . n B 1 197 ILE 197 371 371 ILE ILE H . n B 1 198 GLN 198 372 372 GLN GLN H . n B 1 199 PRO 199 373 373 PRO PRO H . n B 1 200 HIS 200 374 374 HIS HIS H . n B 1 201 GLY 201 375 375 GLY GLY H . n B 1 202 GLY 202 376 376 GLY GLY H . n B 1 203 ALA 203 377 377 ALA ALA H . n B 1 204 GLN 204 378 378 GLN GLN H . n B 1 205 TYR 205 379 379 TYR TYR H . n B 1 206 VAL 206 380 380 VAL VAL H . n B 1 207 SER 207 381 381 SER SER H . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9L1U _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9L1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9L1U _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9L1U _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 8.3 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3234 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.465 ? 4388 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.947 ? 438 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.045 ? 486 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 562 ? f_plane_restr ? ? # _struct.entry_id 9L1U _struct.title 'Pentraxin Domain of PTX3 Dimer, Conformation 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9L1U _struct_keywords.text 'dimer, immune system' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTX3_HUMAN _struct_ref.pdbx_db_accession P26022 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYLSYQSIVFVVGGEEN KLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLT GFNIWDSVLSNEEIRETGGAESCHIRGNIVGWGVTEIQPHGGAQYVS ; _struct_ref.pdbx_align_begin 175 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9L1U A 1 ? 207 ? P26022 175 ? 381 ? 175 381 2 1 9L1U H 1 ? 207 ? P26022 175 ? 381 ? 175 381 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 1 ? CYS A 5 ? LEU A 175 CYS A 179 5 ? 5 HELX_P HELX_P2 AA2 SER A 170 ? GLY A 178 ? SER A 344 GLY A 352 1 ? 9 HELX_P HELX_P3 AA3 SER B 170 ? GLY B 178 ? SER H 344 GLY H 352 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 210 A CYS 271 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 183 SG ? ? H CYS 179 H CYS 357 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 36 ? CYS A 97 ? CYS A 210 ? 1_555 CYS A 271 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 5 ? CYS B 183 ? CYS H 179 ? 1_555 CYS H 357 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 114 ? THR A 119 ? GLU A 288 THR A 293 AA1 2 THR A 107 ? VAL A 111 ? THR A 281 VAL A 285 AA1 3 TRP A 93 ? TRP A 100 ? TRP A 267 TRP A 274 AA1 4 PHE A 33 ? LYS A 40 ? PHE A 207 LYS A 214 AA1 5 GLY A 157 ? THR A 160 ? GLY A 331 THR A 334 AA1 6 ALA A 8 ? PHE A 11 ? ALA A 182 PHE A 185 AA1 7 GLN A 204 ? VAL A 206 ? GLN A 378 VAL A 380 AA2 1 PHE A 19 ? VAL A 22 ? PHE A 193 VAL A 196 AA2 2 ILE A 197 ? HIS A 200 ? ILE A 371 HIS A 374 AA3 1 THR A 48 ? ILE A 49 ? THR A 222 ILE A 223 AA3 2 ILE A 62 ? LEU A 66 ? ILE A 236 LEU A 240 AA3 3 ILE A 71 ? VAL A 75 ? ILE A 245 VAL A 249 AA3 4 LYS A 81 ? LEU A 82 ? LYS A 255 LEU A 256 AA4 1 PHE A 51 ? GLY A 54 ? PHE A 225 GLY A 228 AA4 2 ILE A 133 ? ILE A 136 ? ILE A 307 ILE A 310 AA5 1 ASN A 163 ? ILE A 164 ? ASN A 337 ILE A 338 AA5 2 VAL A 190 ? GLY A 191 ? VAL A 364 GLY A 365 AA6 1 PHE B 19 ? HIS B 23 ? PHE H 193 HIS H 197 AA6 2 GLU B 196 ? HIS B 200 ? GLU H 370 HIS H 374 AA7 1 PHE B 33 ? SER B 34 ? PHE H 207 SER H 208 AA7 2 THR B 94 ? TRP B 100 ? THR H 268 TRP H 274 AA7 3 THR B 107 ? VAL B 111 ? THR H 281 VAL H 285 AA7 4 GLU B 114 ? THR B 119 ? GLU H 288 THR H 293 AA8 1 PHE B 33 ? SER B 34 ? PHE H 207 SER H 208 AA8 2 THR B 94 ? TRP B 100 ? THR H 268 TRP H 274 AA8 3 ILE B 37 ? ALA B 41 ? ILE H 211 ALA H 215 AA8 4 GLY B 157 ? THR B 160 ? GLY H 331 THR H 334 AA9 1 LYS B 81 ? GLU B 85 ? LYS H 255 GLU H 259 AA9 2 SER B 70 ? VAL B 75 ? SER H 244 VAL H 249 AA9 3 ASN B 58 ? LEU B 66 ? ASN H 232 LEU H 240 AA9 4 ILE B 49 ? THR B 55 ? ILE H 223 THR H 229 AA9 5 ILE B 133 ? ILE B 136 ? ILE H 307 ILE H 310 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ALA A 116 ? O ALA A 290 N LEU A 109 ? N LEU A 283 AA1 2 3 O TRP A 110 ? O TRP A 284 N CYS A 97 ? N CYS A 271 AA1 3 4 O THR A 94 ? O THR A 268 N VAL A 39 ? N VAL A 213 AA1 4 5 N LYS A 40 ? N LYS A 214 O ARG A 158 ? O ARG A 332 AA1 5 6 O LEU A 159 ? O LEU A 333 N ILE A 9 ? N ILE A 183 AA1 6 7 N ALA A 8 ? N ALA A 182 O VAL A 206 ? O VAL A 380 AA2 1 2 N PHE A 19 ? N PHE A 193 O HIS A 200 ? O HIS A 374 AA3 1 2 N THR A 48 ? N THR A 222 O LEU A 66 ? O LEU A 240 AA3 2 3 N GLN A 63 ? N GLN A 237 O VAL A 74 ? O VAL A 248 AA3 3 4 N PHE A 73 ? N PHE A 247 O LEU A 82 ? O LEU A 256 AA4 1 2 N SER A 52 ? N SER A 226 O GLN A 135 ? O GLN A 309 AA5 1 2 N ILE A 164 ? N ILE A 338 O VAL A 190 ? O VAL A 364 AA6 1 2 N PHE B 19 ? N PHE H 193 O HIS B 200 ? O HIS H 374 AA7 1 2 N PHE B 33 ? N PHE H 207 O TRP B 100 ? O TRP H 274 AA7 2 3 N CYS B 97 ? N CYS H 271 O TRP B 110 ? O TRP H 284 AA7 3 4 N VAL B 111 ? N VAL H 285 O GLU B 114 ? O GLU H 288 AA8 1 2 N PHE B 33 ? N PHE H 207 O TRP B 100 ? O TRP H 274 AA8 2 3 O LEU B 96 ? O LEU H 270 N ILE B 37 ? N ILE H 211 AA8 3 4 N LYS B 40 ? N LYS H 214 O ARG B 158 ? O ARG H 332 AA9 1 2 O LEU B 82 ? O LEU H 256 N PHE B 73 ? N PHE H 247 AA9 2 3 O VAL B 72 ? O VAL H 246 N TYR B 65 ? N TYR H 239 AA9 3 4 O ASN B 58 ? O ASN H 232 N THR B 55 ? N THR H 229 AA9 4 5 N SER B 52 ? N SER H 226 O GLN B 135 ? O GLN H 309 # _pdbx_entry_details.entry_id 9L1U _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O H ALA 215 ? ? H H GLY 265 ? ? 1.54 2 1 O A ALA 215 ? ? H A GLY 265 ? ? 1.58 3 1 H A PHE 247 ? ? O A LEU 256 ? ? 1.58 4 1 O H LEU 224 ? ? H H GLY 311 ? ? 1.58 5 1 H A VAL 213 ? ? O A THR 268 ? ? 1.58 6 1 OG1 H THR 216 ? ? O H SER 330 ? ? 2.04 7 1 O A THR 281 ? ? OG1 A THR 292 ? ? 2.04 8 1 OG H SER 244 ? ? OE1 H GLU 259 ? ? 2.08 9 1 ND2 A ASN 315 ? ? O A GLY 322 ? ? 2.15 10 1 O A GLY 287 ? ? NH1 A ARG 349 ? ? 2.15 11 1 OE1 H GLU 205 ? ? OG H SER 276 ? ? 2.18 12 1 O H GLY 287 ? ? NE H ARG 349 ? ? 2.18 13 1 NH1 H ARG 188 ? ? OD2 H ASP 217 ? ? 2.18 14 1 O A CYS 271 ? ? N A TRP 284 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 185 ? ? -112.64 77.35 2 1 PHE A 193 ? ? -172.13 -178.56 3 1 ALA A 260 ? ? -144.42 30.48 4 1 GLN A 312 ? ? -175.78 145.13 5 1 PHE H 193 ? ? -170.95 -175.33 6 1 ASN H 232 ? ? -151.14 78.48 7 1 TYR H 234 ? ? -97.34 30.65 8 1 GLN H 237 ? ? -172.73 148.06 9 1 TYR H 242 ? ? 59.93 -127.59 10 1 THR H 292 ? ? -171.56 148.77 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9L1U _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9L1U _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 8.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 11464 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type CELL _em_entity_assembly.name 'Pentraxin Domain of PTX3 Dimer, Conformation 2' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9L1U _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI MORGAGNI' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'DARK FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source OTHER _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9L1U _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name NITROGEN _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9L1U _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state CELL _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-16 _em_admin.deposition_site PDBJ _em_admin.entry_id 9L1U _em_admin.last_update 2025-12-17 _em_admin.map_release_date 2025-12-17 _em_admin.title 'Pentraxin Domain of PTX3 Dimer, Conformation 2' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 40674 _em_entity_assembly_naturalsource.organism Mammalia _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model OTHER _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.19.2_4158 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9L1U _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #