data_9L5Z # _entry.id 9L5Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9L5Z pdb_00009l5z 10.2210/pdb9l5z/pdb WWPDB D_1300054772 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-12-10 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9L5Z _pdbx_database_status.recvd_initial_deposition_date 2024-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 4 _pdbx_contact_author.email shoji.osami.w3@f.mail.nagoya-u.ac.jp _pdbx_contact_author.name_first Osami _pdbx_contact_author.name_last Shoji _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3522-0065 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shibata, M.' 1 0000-0002-7912-3745 'Aiba, Y.' 2 0000-0003-3994-7480 'Sugimoto, H.' 3 0000-0002-3140-8362 'Shoji, O.' 4 0000-0003-3522-0065 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Rsc Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2633-0679 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 1566 _citation.page_last 1575 _citation.title 'Peptide nucleic acids in parallel orientation form invasion complexes with double-stranded DNA.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d5cb00172b _citation.pdbx_database_id_PubMed 40901609 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shibata, M.' 1 0000-0002-7912-3745 primary 'Sugimoto, H.' 2 0000-0002-3140-8362 primary 'Hibino, M.' 3 0000-0001-5732-1647 primary 'Shoji, O.' 4 0000-0003-3522-0065 primary 'Aiba, Y.' 5 0000-0003-3994-7480 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '(TPN)(GPN)(APN)(APN)(CPN)(TPN)(GPN)(CPN)(LYN)' 2322.329 4 ? ? ? ? 2 polymer syn '(APN)(CPN)(TPN)(TPN)(GPN)(APN)(CPN)(GPN)(LYN)' 2322.329 4 ? ? ? ? 3 water nat water 18.015 230 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(TPN)(GPN)(APN)(APN)(CPN)(TPN)(GPN)(CPN)(LYN)' XXXXXXXXK A,C,E,G ? 2 'polypeptide(L)' no yes '(APN)(CPN)(TPN)(TPN)(GPN)(APN)(CPN)(GPN)(LYN)' XXXXXXXXK B,D,F,H ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TPN n 1 2 GPN n 1 3 APN n 1 4 APN n 1 5 CPN n 1 6 TPN n 1 7 GPN n 1 8 CPN n 1 9 LYN n 2 1 APN n 2 2 CPN n 2 3 TPN n 2 4 TPN n 2 5 GPN n 2 6 APN n 2 7 CPN n 2 8 GPN n 2 9 LYN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 9 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight APN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE ? 'C11 H16 N7 O3 1' 294.290 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 LYN 'L-peptide linking' n '2,6-DIAMINO-HEXANOIC ACID AMIDE' ? 'C6 H16 N3 O 1' 146.211 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TPN 1 1 1 TPN TPN A . n A 1 2 GPN 2 2 2 GPN GPN A . n A 1 3 APN 3 3 3 APN APN A . n A 1 4 APN 4 4 4 APN APN A . n A 1 5 CPN 5 5 5 CPN CPN A . n A 1 6 TPN 6 6 6 TPN TPN A . n A 1 7 GPN 7 7 7 GPN GPN A . n A 1 8 CPN 8 8 8 CPN CPN A . n A 1 9 LYN 9 9 9 LYN LYN A . n B 2 1 APN 1 1 1 APN APN B . n B 2 2 CPN 2 2 2 CPN CPN B . n B 2 3 TPN 3 3 3 TPN TPN B . n B 2 4 TPN 4 4 4 TPN TPN B . n B 2 5 GPN 5 5 5 GPN GPN B . n B 2 6 APN 6 6 6 APN APN B . n B 2 7 CPN 7 7 7 CPN CPN B . n B 2 8 GPN 8 8 8 GPN GPN B . n B 2 9 LYN 9 9 9 LYN LYN B . n C 1 1 TPN 1 1 1 TPN TPN C . n C 1 2 GPN 2 2 2 GPN GPN C . n C 1 3 APN 3 3 3 APN APN C . n C 1 4 APN 4 4 4 APN APN C . n C 1 5 CPN 5 5 5 CPN CPN C . n C 1 6 TPN 6 6 6 TPN TPN C . n C 1 7 GPN 7 7 7 GPN GPN C . n C 1 8 CPN 8 8 8 CPN CPN C . n C 1 9 LYN 9 9 9 LYN LYN C . n D 2 1 APN 1 1 1 APN APN D . n D 2 2 CPN 2 2 2 CPN CPN D . n D 2 3 TPN 3 3 3 TPN TPN D . n D 2 4 TPN 4 4 4 TPN TPN D . n D 2 5 GPN 5 5 5 GPN GPN D . n D 2 6 APN 6 6 6 APN APN D . n D 2 7 CPN 7 7 7 CPN CPN D . n D 2 8 GPN 8 8 8 GPN GPN D . n D 2 9 LYN 9 9 9 LYN LYN D . n E 1 1 TPN 1 1 1 TPN TPN E . n E 1 2 GPN 2 2 2 GPN GPN E . n E 1 3 APN 3 3 3 APN APN E . n E 1 4 APN 4 4 4 APN APN E . n E 1 5 CPN 5 5 5 CPN CPN E . n E 1 6 TPN 6 6 6 TPN TPN E . n E 1 7 GPN 7 7 7 GPN GPN E . n E 1 8 CPN 8 8 8 CPN CPN E . n E 1 9 LYN 9 9 9 LYN LYN E . n F 2 1 APN 1 1 1 APN APN F . n F 2 2 CPN 2 2 2 CPN CPN F . n F 2 3 TPN 3 3 3 TPN TPN F . n F 2 4 TPN 4 4 4 TPN TPN F . n F 2 5 GPN 5 5 5 GPN GPN F . n F 2 6 APN 6 6 6 APN APN F . n F 2 7 CPN 7 7 7 CPN CPN F . n F 2 8 GPN 8 8 8 GPN GPN F . n F 2 9 LYN 9 9 9 LYN LYN F . n G 1 1 TPN 1 1 1 TPN TPN G . n G 1 2 GPN 2 2 2 GPN GPN G . n G 1 3 APN 3 3 3 APN APN G . n G 1 4 APN 4 4 4 APN APN G . n G 1 5 CPN 5 5 5 CPN CPN G . n G 1 6 TPN 6 6 6 TPN TPN G . n G 1 7 GPN 7 7 7 GPN GPN G . n G 1 8 CPN 8 8 8 CPN CPN G . n G 1 9 LYN 9 9 9 LYN LYN G . n H 2 1 APN 1 1 1 APN APN H . n H 2 2 CPN 2 2 2 CPN CPN H . n H 2 3 TPN 3 3 3 TPN TPN H . n H 2 4 TPN 4 4 4 TPN TPN H . n H 2 5 GPN 5 5 5 GPN GPN H . n H 2 6 APN 6 6 6 APN APN H . n H 2 7 CPN 7 7 7 CPN CPN H . n H 2 8 GPN 8 8 8 GPN GPN H . n H 2 9 LYN 9 9 9 LYN LYN H . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 APN ? ? APN ? ? 'SUBJECT OF INVESTIGATION' ? 2 CPN ? ? CPN ? ? 'SUBJECT OF INVESTIGATION' ? 3 GPN ? ? GPN ? ? 'SUBJECT OF INVESTIGATION' ? 4 LYN ? ? LYN ? ? 'SUBJECT OF INVESTIGATION' ? 5 TPN ? ? TPN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HOH 1 101 117 HOH HOH A . I 3 HOH 2 102 130 HOH HOH A . I 3 HOH 3 103 110 HOH HOH A . I 3 HOH 4 104 123 HOH HOH A . I 3 HOH 5 105 127 HOH HOH A . I 3 HOH 6 106 108 HOH HOH A . I 3 HOH 7 107 102 HOH HOH A . I 3 HOH 8 108 104 HOH HOH A . I 3 HOH 9 109 118 HOH HOH A . I 3 HOH 10 110 113 HOH HOH A . I 3 HOH 11 111 112 HOH HOH A . I 3 HOH 12 112 101 HOH HOH A . I 3 HOH 13 113 122 HOH HOH A . I 3 HOH 14 114 131 HOH HOH A . I 3 HOH 15 115 114 HOH HOH A . I 3 HOH 16 116 103 HOH HOH A . I 3 HOH 17 117 105 HOH HOH A . I 3 HOH 18 118 106 HOH HOH A . I 3 HOH 19 119 129 HOH HOH A . I 3 HOH 20 120 111 HOH HOH A . I 3 HOH 21 121 109 HOH HOH A . I 3 HOH 22 122 125 HOH HOH A . I 3 HOH 23 123 115 HOH HOH A . I 3 HOH 24 124 132 HOH HOH A . I 3 HOH 25 125 119 HOH HOH A . I 3 HOH 26 126 128 HOH HOH A . I 3 HOH 27 127 126 HOH HOH A . I 3 HOH 28 128 120 HOH HOH A . I 3 HOH 29 129 107 HOH HOH A . I 3 HOH 30 130 121 HOH HOH A . I 3 HOH 31 131 124 HOH HOH A . I 3 HOH 32 132 116 HOH HOH A . J 3 HOH 1 101 128 HOH HOH B . J 3 HOH 2 102 117 HOH HOH B . J 3 HOH 3 103 105 HOH HOH B . J 3 HOH 4 104 112 HOH HOH B . J 3 HOH 5 105 106 HOH HOH B . J 3 HOH 6 106 126 HOH HOH B . J 3 HOH 7 107 107 HOH HOH B . J 3 HOH 8 108 108 HOH HOH B . J 3 HOH 9 109 114 HOH HOH B . J 3 HOH 10 110 102 HOH HOH B . J 3 HOH 11 111 118 HOH HOH B . J 3 HOH 12 112 115 HOH HOH B . J 3 HOH 13 113 103 HOH HOH B . J 3 HOH 14 114 111 HOH HOH B . J 3 HOH 15 115 110 HOH HOH B . J 3 HOH 16 116 104 HOH HOH B . J 3 HOH 17 117 116 HOH HOH B . J 3 HOH 18 118 101 HOH HOH B . J 3 HOH 19 119 119 HOH HOH B . J 3 HOH 20 120 127 HOH HOH B . J 3 HOH 21 121 120 HOH HOH B . J 3 HOH 22 122 124 HOH HOH B . J 3 HOH 23 123 122 HOH HOH B . J 3 HOH 24 124 113 HOH HOH B . J 3 HOH 25 125 126 HOH HOH B . J 3 HOH 26 126 123 HOH HOH B . J 3 HOH 27 127 121 HOH HOH B . J 3 HOH 28 128 125 HOH HOH B . K 3 HOH 1 101 110 HOH HOH C . K 3 HOH 2 102 108 HOH HOH C . K 3 HOH 3 103 124 HOH HOH C . K 3 HOH 4 104 117 HOH HOH C . K 3 HOH 5 105 111 HOH HOH C . K 3 HOH 6 106 109 HOH HOH C . K 3 HOH 7 107 125 HOH HOH C . K 3 HOH 8 108 103 HOH HOH C . K 3 HOH 9 109 118 HOH HOH C . K 3 HOH 10 110 115 HOH HOH C . K 3 HOH 11 111 104 HOH HOH C . K 3 HOH 12 112 113 HOH HOH C . K 3 HOH 13 113 102 HOH HOH C . K 3 HOH 14 114 126 HOH HOH C . K 3 HOH 15 115 119 HOH HOH C . K 3 HOH 16 116 101 HOH HOH C . K 3 HOH 17 117 105 HOH HOH C . K 3 HOH 18 118 112 HOH HOH C . K 3 HOH 19 119 118 HOH HOH C . K 3 HOH 20 120 106 HOH HOH C . K 3 HOH 21 121 120 HOH HOH C . K 3 HOH 22 122 123 HOH HOH C . K 3 HOH 23 123 122 HOH HOH C . K 3 HOH 24 124 107 HOH HOH C . K 3 HOH 25 125 116 HOH HOH C . K 3 HOH 26 126 120 HOH HOH C . K 3 HOH 27 127 114 HOH HOH C . L 3 HOH 1 101 132 HOH HOH D . L 3 HOH 2 102 124 HOH HOH D . L 3 HOH 3 103 112 HOH HOH D . L 3 HOH 4 104 121 HOH HOH D . L 3 HOH 5 105 111 HOH HOH D . L 3 HOH 6 106 133 HOH HOH D . L 3 HOH 7 107 119 HOH HOH D . L 3 HOH 8 108 125 HOH HOH D . L 3 HOH 9 109 126 HOH HOH D . L 3 HOH 10 110 113 HOH HOH D . L 3 HOH 11 111 103 HOH HOH D . L 3 HOH 12 112 127 HOH HOH D . L 3 HOH 13 113 101 HOH HOH D . L 3 HOH 14 114 104 HOH HOH D . L 3 HOH 15 115 115 HOH HOH D . L 3 HOH 16 116 116 HOH HOH D . L 3 HOH 17 117 109 HOH HOH D . L 3 HOH 18 118 108 HOH HOH D . L 3 HOH 19 119 120 HOH HOH D . L 3 HOH 20 120 131 HOH HOH D . L 3 HOH 21 121 107 HOH HOH D . L 3 HOH 22 122 105 HOH HOH D . L 3 HOH 23 123 102 HOH HOH D . L 3 HOH 24 124 139 HOH HOH D . L 3 HOH 25 125 128 HOH HOH D . L 3 HOH 26 126 129 HOH HOH D . L 3 HOH 27 127 140 HOH HOH D . L 3 HOH 28 128 134 HOH HOH D . L 3 HOH 29 129 123 HOH HOH D . L 3 HOH 30 130 118 HOH HOH D . L 3 HOH 31 131 117 HOH HOH D . L 3 HOH 32 132 110 HOH HOH D . L 3 HOH 33 133 130 HOH HOH D . L 3 HOH 34 134 106 HOH HOH D . L 3 HOH 35 135 122 HOH HOH D . L 3 HOH 36 136 137 HOH HOH D . L 3 HOH 37 137 136 HOH HOH D . L 3 HOH 38 138 135 HOH HOH D . L 3 HOH 39 139 138 HOH HOH D . M 3 HOH 1 101 110 HOH HOH E . M 3 HOH 2 102 123 HOH HOH E . M 3 HOH 3 103 121 HOH HOH E . M 3 HOH 4 104 107 HOH HOH E . M 3 HOH 5 105 108 HOH HOH E . M 3 HOH 6 106 109 HOH HOH E . M 3 HOH 7 107 105 HOH HOH E . M 3 HOH 8 108 119 HOH HOH E . M 3 HOH 9 109 111 HOH HOH E . M 3 HOH 10 110 117 HOH HOH E . M 3 HOH 11 111 104 HOH HOH E . M 3 HOH 12 112 103 HOH HOH E . M 3 HOH 13 113 122 HOH HOH E . M 3 HOH 14 114 101 HOH HOH E . M 3 HOH 15 115 102 HOH HOH E . M 3 HOH 16 116 120 HOH HOH E . M 3 HOH 17 117 116 HOH HOH E . M 3 HOH 18 118 114 HOH HOH E . M 3 HOH 19 119 106 HOH HOH E . M 3 HOH 20 120 112 HOH HOH E . M 3 HOH 21 121 113 HOH HOH E . M 3 HOH 22 122 115 HOH HOH E . N 3 HOH 1 101 113 HOH HOH F . N 3 HOH 2 102 127 HOH HOH F . N 3 HOH 3 103 107 HOH HOH F . N 3 HOH 4 104 119 HOH HOH F . N 3 HOH 5 105 109 HOH HOH F . N 3 HOH 6 106 110 HOH HOH F . N 3 HOH 7 107 115 HOH HOH F . N 3 HOH 8 108 105 HOH HOH F . N 3 HOH 9 109 108 HOH HOH F . N 3 HOH 10 110 125 HOH HOH F . N 3 HOH 11 111 126 HOH HOH F . N 3 HOH 12 112 104 HOH HOH F . N 3 HOH 13 113 122 HOH HOH F . N 3 HOH 14 114 106 HOH HOH F . N 3 HOH 15 115 111 HOH HOH F . N 3 HOH 16 116 103 HOH HOH F . N 3 HOH 17 117 116 HOH HOH F . N 3 HOH 18 118 114 HOH HOH F . N 3 HOH 19 119 117 HOH HOH F . N 3 HOH 20 120 102 HOH HOH F . N 3 HOH 21 121 101 HOH HOH F . N 3 HOH 22 122 124 HOH HOH F . N 3 HOH 23 123 112 HOH HOH F . N 3 HOH 24 124 129 HOH HOH F . N 3 HOH 25 125 121 HOH HOH F . N 3 HOH 26 126 120 HOH HOH F . N 3 HOH 27 127 128 HOH HOH F . N 3 HOH 28 128 123 HOH HOH F . N 3 HOH 29 129 118 HOH HOH F . O 3 HOH 1 101 113 HOH HOH G . O 3 HOH 2 102 109 HOH HOH G . O 3 HOH 3 103 107 HOH HOH G . O 3 HOH 4 104 102 HOH HOH G . O 3 HOH 5 105 108 HOH HOH G . O 3 HOH 6 106 114 HOH HOH G . O 3 HOH 7 107 120 HOH HOH G . O 3 HOH 8 108 106 HOH HOH G . O 3 HOH 9 109 118 HOH HOH G . O 3 HOH 10 110 102 HOH HOH G . O 3 HOH 11 111 128 HOH HOH G . O 3 HOH 12 112 110 HOH HOH G . O 3 HOH 13 113 116 HOH HOH G . O 3 HOH 14 114 104 HOH HOH G . O 3 HOH 15 115 119 HOH HOH G . O 3 HOH 16 116 121 HOH HOH G . O 3 HOH 17 117 129 HOH HOH G . O 3 HOH 18 118 122 HOH HOH G . P 3 HOH 1 101 123 HOH HOH H . P 3 HOH 2 102 115 HOH HOH H . P 3 HOH 3 103 109 HOH HOH H . P 3 HOH 4 104 101 HOH HOH H . P 3 HOH 5 105 108 HOH HOH H . P 3 HOH 6 106 113 HOH HOH H . P 3 HOH 7 107 101 HOH HOH H . P 3 HOH 8 108 107 HOH HOH H . P 3 HOH 9 109 117 HOH HOH H . P 3 HOH 10 110 106 HOH HOH H . P 3 HOH 11 111 118 HOH HOH H . P 3 HOH 12 112 124 HOH HOH H . P 3 HOH 13 113 121 HOH HOH H . P 3 HOH 14 114 109 HOH HOH H . P 3 HOH 15 115 103 HOH HOH H . P 3 HOH 16 116 110 HOH HOH H . P 3 HOH 17 117 105 HOH HOH H . P 3 HOH 18 118 123 HOH HOH H . P 3 HOH 19 119 111 HOH HOH H . P 3 HOH 20 120 103 HOH HOH H . P 3 HOH 21 121 115 HOH HOH H . P 3 HOH 22 122 112 HOH HOH H . P 3 HOH 23 123 105 HOH HOH H . P 3 HOH 24 124 112 HOH HOH H . P 3 HOH 25 125 119 HOH HOH H . P 3 HOH 26 126 116 HOH HOH H . P 3 HOH 27 127 114 HOH HOH H . P 3 HOH 28 128 117 HOH HOH H . P 3 HOH 29 129 122 HOH HOH H . P 3 HOH 30 130 114 HOH HOH H . P 3 HOH 31 131 125 HOH HOH H . P 3 HOH 32 132 104 HOH HOH H . P 3 HOH 33 133 127 HOH HOH H . P 3 HOH 34 134 111 HOH HOH H . P 3 HOH 35 135 121 HOH HOH H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYN 9 ? CB ? B LYN 9 CB 2 1 Y 1 B LYN 9 ? CG ? B LYN 9 CG 3 1 Y 1 B LYN 9 ? CD ? B LYN 9 CD 4 1 Y 1 B LYN 9 ? CE ? B LYN 9 CE 5 1 Y 1 B LYN 9 ? NZ ? B LYN 9 NZ 6 1 Y 1 B LYN 9 ? C ? B LYN 9 C 7 1 Y 1 B LYN 9 ? O ? B LYN 9 O 8 1 Y 1 B LYN 9 ? NT ? B LYN 9 NT # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0430 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 1.12.15 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Jun 30, 2023 BUILT=20230630' 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 94.89 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9L5Z _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.063 _cell.length_a_esd ? _cell.length_b 52.867 _cell.length_b_esd ? _cell.length_c 53.340 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9L5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9L5Z _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Bis-Tris-HCl (pH 8.5), 0.052 M MgCl2, and 18%(w/v) PEG3350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-05-31 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Si _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL45XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9L5Z _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 19.740 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22955 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.900 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.9000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.07500 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1204 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.00 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.06100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -2.45 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.58 _refine.aniso_B[2][2] 2.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.54 _refine.B_iso_max ? _refine.B_iso_mean 30.294 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9L5Z _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 10.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21657 _refine.ls_number_reflns_R_free 1176 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.76 _refine.ls_percent_reflns_R_free 5.2 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.25092 _refine.ls_R_factor_R_free 0.29046 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.24876 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.157 _refine.pdbx_overall_ESU_R_Free 0.149 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.986 _refine.overall_SU_ML 0.122 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 10.00 _refine_hist.number_atoms_solvent 230 _refine_hist.number_atoms_total 1550 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1320 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.019 1730 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1163 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.168 2.887 2414 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.915 2.894 2561 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.137 5.000 160 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.048 0.200 7 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.020 1958 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 294 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 4.083 3.568 88 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 4.070 3.560 88 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 8.711 7.220 40 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 8.638 7.236 41 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.128 2.361 1642 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.128 2.363 1643 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.494 4.213 2391 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.035 32.76 3033 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.042 32.76 3031 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.743 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.number_reflns_R_work 1556 _refine_ls_shell.percent_reflns_obs 97.20 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.346 # _struct.entry_id 9L5Z _struct.title 'Crystal structure of a parallel-stranded PNA duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9L5Z _struct_keywords.text 'PEPTIDE NUCLEIC ACID, DNA' _struct_keywords.pdbx_keywords 'PEPTIDE NUCLEIC ACID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9L5Z 9L5Z ? 1 ? 1 2 PDB 9L5Z 9L5Z ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9L5Z A 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 2 2 9L5Z B 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 3 1 9L5Z C 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 4 2 9L5Z D 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 5 1 9L5Z E 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 6 2 9L5Z F 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 7 1 9L5Z G 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 8 2 9L5Z H 1 ? 9 ? 9L5Z 1 ? 9 ? 1 9 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J 2 1 C,D,K,L 3 1 E,F,M,N 4 1 G,H,O,P # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' electrophoresis 2 2 'assay for oligomerization' electrophoresis 3 3 'assay for oligomerization' electrophoresis 4 4 'assay for oligomerization' electrophoresis # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TPN 1 C ? ? ? 1_555 A GPN 2 N ? ? A TPN 1 A GPN 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale2 covale both ? A GPN 2 C ? ? ? 1_555 A APN 3 N ? ? A GPN 2 A APN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A APN 3 C ? ? ? 1_555 A APN 4 N ? ? A APN 3 A APN 4 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? A APN 4 C ? ? ? 1_555 A CPN 5 N ? ? A APN 4 A CPN 5 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale5 covale both ? A CPN 5 C ? ? ? 1_555 A TPN 6 N ? ? A CPN 5 A TPN 6 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A TPN 6 C ? ? ? 1_555 A GPN 7 N ? ? A TPN 6 A GPN 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? A GPN 7 C ? ? ? 1_555 A CPN 8 N ? ? A GPN 7 A CPN 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale8 covale both ? A CPN 8 C ? ? ? 1_555 A LYN 9 N ? ? A CPN 8 A LYN 9 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale9 covale both ? B APN 1 C ? ? ? 1_555 B CPN 2 N ? ? B APN 1 B CPN 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale10 covale both ? B CPN 2 C ? ? ? 1_555 B TPN 3 N ? ? B CPN 2 B TPN 3 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale11 covale both ? B TPN 3 C ? ? ? 1_555 B TPN 4 N ? ? B TPN 3 B TPN 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale12 covale both ? B TPN 4 C ? ? ? 1_555 B GPN 5 N ? ? B TPN 4 B GPN 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale13 covale both ? B GPN 5 C ? ? ? 1_555 B APN 6 N ? ? B GPN 5 B APN 6 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale both ? B APN 6 C ? ? ? 1_555 B CPN 7 N ? ? B APN 6 B CPN 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale15 covale both ? B CPN 7 C ? ? ? 1_555 B GPN 8 N ? ? B CPN 7 B GPN 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale16 covale both ? B GPN 8 C ? ? ? 1_555 B LYN 9 N ? ? B GPN 8 B LYN 9 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale17 covale both ? C TPN 1 C ? ? ? 1_555 C GPN 2 N ? ? C TPN 1 C GPN 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale18 covale both ? C GPN 2 C ? ? ? 1_555 C APN 3 N ? ? C GPN 2 C APN 3 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale19 covale both ? C APN 3 C ? ? ? 1_555 C APN 4 N ? ? C APN 3 C APN 4 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale20 covale both ? C APN 4 C ? ? ? 1_555 C CPN 5 N ? ? C APN 4 C CPN 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale21 covale both ? C CPN 5 C ? ? ? 1_555 C TPN 6 N ? ? C CPN 5 C TPN 6 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale22 covale both ? C TPN 6 C ? ? ? 1_555 C GPN 7 N ? ? C TPN 6 C GPN 7 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale23 covale both ? C GPN 7 C ? ? ? 1_555 C CPN 8 N ? ? C GPN 7 C CPN 8 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale24 covale both ? C CPN 8 C ? ? ? 1_555 C LYN 9 N ? ? C CPN 8 C LYN 9 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale25 covale both ? D APN 1 C ? ? ? 1_555 D CPN 2 N ? ? D APN 1 D CPN 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale26 covale both ? D CPN 2 C ? ? ? 1_555 D TPN 3 N ? ? D CPN 2 D TPN 3 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale27 covale both ? D TPN 3 C ? ? ? 1_555 D TPN 4 N ? ? D TPN 3 D TPN 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale28 covale both ? D TPN 4 C ? ? ? 1_555 D GPN 5 N ? ? D TPN 4 D GPN 5 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale29 covale both ? D GPN 5 C ? ? ? 1_555 D APN 6 N ? ? D GPN 5 D APN 6 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale30 covale both ? D APN 6 C ? ? ? 1_555 D CPN 7 N ? ? D APN 6 D CPN 7 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale31 covale both ? D CPN 7 C ? ? ? 1_555 D GPN 8 N ? ? D CPN 7 D GPN 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale32 covale both ? D GPN 8 C ? ? ? 1_555 D LYN 9 N ? ? D GPN 8 D LYN 9 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale33 covale both ? E TPN 1 C ? ? ? 1_555 E GPN 2 N ? ? E TPN 1 E GPN 2 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale34 covale both ? E GPN 2 C ? ? ? 1_555 E APN 3 N ? ? E GPN 2 E APN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale35 covale both ? E APN 3 C ? ? ? 1_555 E APN 4 N ? ? E APN 3 E APN 4 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale36 covale both ? E APN 4 C ? ? ? 1_555 E CPN 5 N ? ? E APN 4 E CPN 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale37 covale both ? E CPN 5 C ? ? ? 1_555 E TPN 6 N ? ? E CPN 5 E TPN 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale38 covale both ? E TPN 6 C ? ? ? 1_555 E GPN 7 N ? ? E TPN 6 E GPN 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale39 covale both ? E GPN 7 C ? ? ? 1_555 E CPN 8 N ? ? E GPN 7 E CPN 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale40 covale both ? E CPN 8 C ? ? ? 1_555 E LYN 9 N ? ? E CPN 8 E LYN 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale41 covale both ? F APN 1 C ? ? ? 1_555 F CPN 2 N ? ? F APN 1 F CPN 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale42 covale both ? F CPN 2 C ? ? ? 1_555 F TPN 3 N ? ? F CPN 2 F TPN 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale43 covale both ? F TPN 3 C ? ? ? 1_555 F TPN 4 N ? ? F TPN 3 F TPN 4 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale44 covale both ? F TPN 4 C ? ? ? 1_555 F GPN 5 N ? ? F TPN 4 F GPN 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale45 covale both ? F GPN 5 C ? ? ? 1_555 F APN 6 N ? ? F GPN 5 F APN 6 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale46 covale both ? F APN 6 C ? ? ? 1_555 F CPN 7 N ? ? F APN 6 F CPN 7 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale47 covale both ? F CPN 7 C ? ? ? 1_555 F GPN 8 N ? ? F CPN 7 F GPN 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale48 covale both ? F GPN 8 C ? ? ? 1_555 F LYN 9 N ? ? F GPN 8 F LYN 9 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale49 covale both ? G TPN 1 C A ? ? 1_555 G GPN 2 N A ? G TPN 1 G GPN 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale50 covale both ? G TPN 1 C B ? ? 1_555 G GPN 2 N B ? G TPN 1 G GPN 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale51 covale both ? G GPN 2 C A ? ? 1_555 G APN 3 N A ? G GPN 2 G APN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale52 covale both ? G GPN 2 C B ? ? 1_555 G APN 3 N B ? G GPN 2 G APN 3 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale53 covale both ? G APN 3 C A ? ? 1_555 G APN 4 N A ? G APN 3 G APN 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale54 covale both ? G APN 3 C B ? ? 1_555 G APN 4 N B ? G APN 3 G APN 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale55 covale both ? G APN 4 C A ? ? 1_555 G CPN 5 N A ? G APN 4 G CPN 5 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale56 covale both ? G APN 4 C B ? ? 1_555 G CPN 5 N B ? G APN 4 G CPN 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale57 covale both ? G CPN 5 C A ? ? 1_555 G TPN 6 N A ? G CPN 5 G TPN 6 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale58 covale both ? G CPN 5 C B ? ? 1_555 G TPN 6 N B ? G CPN 5 G TPN 6 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale59 covale both ? G TPN 6 C A ? ? 1_555 G GPN 7 N A ? G TPN 6 G GPN 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale60 covale both ? G TPN 6 C B ? ? 1_555 G GPN 7 N B ? G TPN 6 G GPN 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale61 covale both ? G GPN 7 C A ? ? 1_555 G CPN 8 N A ? G GPN 7 G CPN 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale62 covale both ? G GPN 7 C B ? ? 1_555 G CPN 8 N B ? G GPN 7 G CPN 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale63 covale both ? G CPN 8 C A ? ? 1_555 G LYN 9 N A ? G CPN 8 G LYN 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale64 covale both ? G CPN 8 C B ? ? 1_555 G LYN 9 N B ? G CPN 8 G LYN 9 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale65 covale both ? H APN 1 C A ? ? 1_555 H CPN 2 N A ? H APN 1 H CPN 2 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale66 covale both ? H APN 1 C B ? ? 1_555 H CPN 2 N B ? H APN 1 H CPN 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale67 covale both ? H CPN 2 C A ? ? 1_555 H TPN 3 N A ? H CPN 2 H TPN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale68 covale both ? H CPN 2 C B ? ? 1_555 H TPN 3 N B ? H CPN 2 H TPN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale69 covale both ? H TPN 3 C A ? ? 1_555 H TPN 4 N A ? H TPN 3 H TPN 4 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale70 covale both ? H TPN 3 C B ? ? 1_555 H TPN 4 N B ? H TPN 3 H TPN 4 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale71 covale both ? H TPN 4 C A ? ? 1_555 H GPN 5 N A ? H TPN 4 H GPN 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale72 covale both ? H TPN 4 C B ? ? 1_555 H GPN 5 N B ? H TPN 4 H GPN 5 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale73 covale both ? H GPN 5 C A ? ? 1_555 H APN 6 N A ? H GPN 5 H APN 6 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale74 covale both ? H GPN 5 C B ? ? 1_555 H APN 6 N B ? H GPN 5 H APN 6 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale75 covale both ? H APN 6 C A ? ? 1_555 H CPN 7 N A ? H APN 6 H CPN 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale76 covale both ? H APN 6 C B ? ? 1_555 H CPN 7 N B ? H APN 6 H CPN 7 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale77 covale both ? H CPN 7 C A ? ? 1_555 H GPN 8 N A ? H CPN 7 H GPN 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale78 covale both ? H CPN 7 C B ? ? 1_555 H GPN 8 N B ? H CPN 7 H GPN 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale79 covale both ? H GPN 8 C A ? ? 1_555 H LYN 9 N A ? H GPN 8 H LYN 9 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale80 covale both ? H GPN 8 C B ? ? 1_555 H LYN 9 N B ? H GPN 8 H LYN 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 TPN A 1 ? . . . . TPN A 1 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 2 GPN A 2 ? . . . . GPN A 2 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 3 APN A 3 ? . . . . APN A 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 4 APN A 4 ? . . . . APN A 4 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 5 CPN A 5 ? . . . . CPN A 5 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 6 TPN A 6 ? . . . . TPN A 6 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 7 GPN A 7 ? . . . . GPN A 7 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 8 CPN A 8 ? . . . . CPN A 8 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 9 LYN A 9 ? . . . . LYN A 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 10 APN B 1 ? . . . . APN B 1 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 11 CPN B 2 ? . . . . CPN B 2 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 12 TPN B 3 ? . . . . TPN B 3 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 13 TPN B 4 ? . . . . TPN B 4 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 14 GPN B 5 ? . . . . GPN B 5 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 15 APN B 6 ? . . . . APN B 6 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 16 CPN B 7 ? . . . . CPN B 7 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 17 GPN B 8 ? . . . . GPN B 8 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 18 LYN B 9 ? . . . . LYN B 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 19 TPN C 1 ? . . . . TPN C 1 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 20 GPN C 2 ? . . . . GPN C 2 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 21 APN C 3 ? . . . . APN C 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 22 APN C 4 ? . . . . APN C 4 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 23 CPN C 5 ? . . . . CPN C 5 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 24 TPN C 6 ? . . . . TPN C 6 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 25 GPN C 7 ? . . . . GPN C 7 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 26 CPN C 8 ? . . . . CPN C 8 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 27 LYN C 9 ? . . . . LYN C 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 28 APN D 1 ? . . . . APN D 1 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 29 CPN D 2 ? . . . . CPN D 2 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 30 TPN D 3 ? . . . . TPN D 3 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 31 TPN D 4 ? . . . . TPN D 4 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 32 GPN D 5 ? . . . . GPN D 5 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 33 APN D 6 ? . . . . APN D 6 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 34 CPN D 7 ? . . . . CPN D 7 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 35 GPN D 8 ? . . . . GPN D 8 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 36 LYN D 9 ? . . . . LYN D 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 37 TPN E 1 ? . . . . TPN E 1 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 38 GPN E 2 ? . . . . GPN E 2 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 39 APN E 3 ? . . . . APN E 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 40 APN E 4 ? . . . . APN E 4 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 41 CPN E 5 ? . . . . CPN E 5 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 42 TPN E 6 ? . . . . TPN E 6 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 43 GPN E 7 ? . . . . GPN E 7 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 44 CPN E 8 ? . . . . CPN E 8 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 45 LYN E 9 ? . . . . LYN E 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 46 APN F 1 ? . . . . APN F 1 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 47 CPN F 2 ? . . . . CPN F 2 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 48 TPN F 3 ? . . . . TPN F 3 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 49 TPN F 4 ? . . . . TPN F 4 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 50 GPN F 5 ? . . . . GPN F 5 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 51 APN F 6 ? . . . . APN F 6 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 52 CPN F 7 ? . . . . CPN F 7 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 53 GPN F 8 ? . . . . GPN F 8 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 54 LYN F 9 ? . . . . LYN F 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 55 TPN G 1 A . . . . TPN G 1 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 56 TPN G 1 B . . . . TPN G 1 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 57 GPN G 2 A . . . . GPN G 2 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 58 GPN G 2 B . . . . GPN G 2 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 59 APN G 3 A . . . . APN G 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 60 APN G 3 B . . . . APN G 3 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 61 APN G 4 A . . . . APN G 4 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 62 APN G 4 B . . . . APN G 4 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 63 CPN G 5 A . . . . CPN G 5 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 64 CPN G 5 B . . . . CPN G 5 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 65 TPN G 6 A . . . . TPN G 6 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 66 TPN G 6 B . . . . TPN G 6 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 67 GPN G 7 A . . . . GPN G 7 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 68 GPN G 7 B . . . . GPN G 7 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 69 CPN G 8 A . . . . CPN G 8 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 70 CPN G 8 B . . . . CPN G 8 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 71 LYN G 9 A . . . . LYN G 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 72 LYN G 9 B . . . . LYN G 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 73 APN H 1 A . . . . APN H 1 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 74 APN H 1 B . . . . APN H 1 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 75 CPN H 2 A . . . . CPN H 2 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 76 CPN H 2 B . . . . CPN H 2 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 77 TPN H 3 A . . . . TPN H 3 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 78 TPN H 3 B . . . . TPN H 3 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 79 TPN H 4 A . . . . TPN H 4 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 80 TPN H 4 B . . . . TPN H 4 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 81 GPN H 5 A . . . . GPN H 5 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 82 GPN H 5 B . . . . GPN H 5 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 83 APN H 6 A . . . . APN H 6 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 84 APN H 6 B . . . . APN H 6 ? 1_555 . . . . . . . ? 1 APN None 'Non-standard residue' 85 CPN H 7 A . . . . CPN H 7 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 86 CPN H 7 B . . . . CPN H 7 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 87 GPN H 8 A . . . . GPN H 8 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 88 GPN H 8 B . . . . GPN H 8 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 89 LYN H 9 A . . . . LYN H 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 90 LYN H 9 B . . . . LYN H 9 ? 1_555 . . . . . . . LYS 2 LYN None 'Non-standard residue' 91 CPN A 8 ? LYN A 9 ? CPN A 8 ? 1_555 LYN A 9 ? 1_555 C N . . . None 'Non-standard linkage' 92 GPN B 8 ? LYN B 9 ? GPN B 8 ? 1_555 LYN B 9 ? 1_555 C N . . . None 'Non-standard linkage' 93 CPN C 8 ? LYN C 9 ? CPN C 8 ? 1_555 LYN C 9 ? 1_555 C N . . . None 'Non-standard linkage' 94 GPN D 8 ? LYN D 9 ? GPN D 8 ? 1_555 LYN D 9 ? 1_555 C N . . . None 'Non-standard linkage' 95 CPN E 8 ? LYN E 9 ? CPN E 8 ? 1_555 LYN E 9 ? 1_555 C N . . . None 'Non-standard linkage' 96 GPN F 8 ? LYN F 9 ? GPN F 8 ? 1_555 LYN F 9 ? 1_555 C N . . . None 'Non-standard linkage' 97 CPN G 8 A LYN G 9 A CPN G 8 ? 1_555 LYN G 9 ? 1_555 C N . . . None 'Non-standard linkage' 98 CPN G 8 B LYN G 9 B CPN G 8 ? 1_555 LYN G 9 ? 1_555 C N . . . None 'Non-standard linkage' 99 GPN H 8 A LYN H 9 A GPN H 8 ? 1_555 LYN H 9 ? 1_555 C N . . . None 'Non-standard linkage' 100 GPN H 8 B LYN H 9 B GPN H 8 ? 1_555 LYN H 9 ? 1_555 C N . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 9L5Z _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 9.3597 16.3376 16.2751 0.0693 ? -0.0050 ? -0.0130 ? 0.0797 ? 0.0115 ? 0.0501 ? 3.0771 ? 0.2389 ? 0.5303 ? 0.7878 ? 0.0512 ? 0.0926 ? 0.0155 ? 0.0711 ? -0.3591 ? 0.0164 ? 0.0371 ? 0.0100 ? -0.0064 ? 0.0163 ? -0.0526 ? 2 'X-RAY DIFFRACTION' ? refined 10.4355 6.9355 -11.9887 0.0738 ? 0.0001 ? 0.0119 ? 0.0584 ? 0.0296 ? 0.0584 ? 0.7143 ? -0.1348 ? 0.9467 ? 0.4359 ? 0.1960 ? 1.9787 ? 0.1172 ? -0.0591 ? -0.1555 ? -0.0423 ? 0.1604 ? 0.0467 ? -0.0214 ? 0.0074 ? -0.2777 ? 3 'X-RAY DIFFRACTION' ? refined -7.4506 7.1300 -11.1338 0.0754 ? 0.0126 ? -0.0089 ? 0.0818 ? -0.0001 ? 0.0649 ? 3.3008 ? -0.5027 ? 0.4693 ? 0.8925 ? -0.1030 ? 0.0696 ? 0.0123 ? 0.1514 ? 0.4091 ? 0.0090 ? -0.0590 ? 0.0261 ? 0.0129 ? 0.0277 ? 0.0467 ? 4 'X-RAY DIFFRACTION' ? refined -10.2706 16.5242 14.9511 0.0843 ? -0.0429 ? 0.0208 ? 0.0950 ? -0.0239 ? 0.0682 ? 1.3605 ? 0.6255 ? 0.8912 ? 0.4883 ? 0.2287 ? 2.8101 ? -0.2267 ? -0.0704 ? 0.1425 ? -0.0372 ? -0.1821 ? 0.0608 ? 0.0854 ? -0.0505 ? 0.4088 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 9 ? ? ? 2 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? ? B 9 ? ? ? 3 'X-RAY DIFFRACTION' 2 ? ? C 1 ? ? ? C 9 ? ? ? 4 'X-RAY DIFFRACTION' 2 ? ? D 1 ? ? ? D 9 ? ? ? 5 'X-RAY DIFFRACTION' 3 ? ? E 1 ? ? ? E 9 ? ? ? 6 'X-RAY DIFFRACTION' 3 ? ? F 1 ? ? ? F 9 ? ? ? 7 'X-RAY DIFFRACTION' 4 ? ? G 1 ? ? ? G 9 ? ? ? 8 'X-RAY DIFFRACTION' 4 ? ? H 1 ? ? ? H 9 ? ? ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 128 ? 6.51 . 2 1 O ? D HOH 138 ? 6.67 . 3 1 O ? D HOH 139 ? 6.96 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal APN "C8'" C N N 1 APN "C7'" C N N 2 APN "O7'" O N N 3 APN "C5'" C N N 4 APN C C N N 5 APN O O N N 6 APN OXT O N N 7 APN "N4'" N N N 8 APN "C3'" C N N 9 APN "C2'" C N N 10 APN N N N N 11 APN N9 N Y N 12 APN C8 C Y N 13 APN N7 N Y N 14 APN C5 C Y N 15 APN C6 C Y N 16 APN N6 N N N 17 APN N1 N Y N 18 APN C2 C Y N 19 APN N3 N Y N 20 APN C4 C Y N 21 APN "H8'1" H N N 22 APN "H8'2" H N N 23 APN "H5'1" H N N 24 APN "H5'2" H N N 25 APN HXT H N N 26 APN "H3'1" H N N 27 APN "H3'2" H N N 28 APN "H2'1" H N N 29 APN "H2'2" H N N 30 APN H H N N 31 APN H2 H N N 32 APN H3 H N N 33 APN H8 H N N 34 APN HN61 H N N 35 APN HN62 H N N 36 APN H21 H N N 37 CPN "C8'" C N N 38 CPN "C7'" C N N 39 CPN "O7'" O N N 40 CPN "C5'" C N N 41 CPN C C N N 42 CPN O O N N 43 CPN OXT O N N 44 CPN "N4'" N N N 45 CPN "C3'" C N N 46 CPN "C2'" C N N 47 CPN N N N N 48 CPN N1 N N N 49 CPN C2 C N N 50 CPN N3 N N N 51 CPN C4 C N N 52 CPN C5 C N N 53 CPN C6 C N N 54 CPN O2 O N N 55 CPN N4 N N N 56 CPN "H8'1" H N N 57 CPN "H8'2" H N N 58 CPN "H5'1" H N N 59 CPN "H5'2" H N N 60 CPN HXT H N N 61 CPN "H3'1" H N N 62 CPN "H3'2" H N N 63 CPN "H2'1" H N N 64 CPN "H2'2" H N N 65 CPN H H N N 66 CPN H2 H N N 67 CPN H3 H N N 68 CPN H5 H N N 69 CPN H6 H N N 70 CPN HN41 H N N 71 CPN HN42 H N N 72 GPN "C8'" C N N 73 GPN "C7'" C N N 74 GPN "O7'" O N N 75 GPN "C5'" C N N 76 GPN C C N N 77 GPN O O N N 78 GPN OXT O N N 79 GPN "N4'" N N N 80 GPN "C3'" C N N 81 GPN "C2'" C N N 82 GPN N N N N 83 GPN N9 N Y N 84 GPN C8 C Y N 85 GPN N7 N Y N 86 GPN C5 C Y N 87 GPN C6 C N N 88 GPN O6 O N N 89 GPN N1 N N N 90 GPN C2 C N N 91 GPN N2 N N N 92 GPN N3 N N N 93 GPN C4 C Y N 94 GPN "H8'1" H N N 95 GPN "H8'2" H N N 96 GPN "H5'1" H N N 97 GPN "H5'2" H N N 98 GPN HXT H N N 99 GPN "H3'1" H N N 100 GPN "H3'2" H N N 101 GPN "H2'1" H N N 102 GPN "H2'2" H N N 103 GPN H H N N 104 GPN H2 H N N 105 GPN H3 H N N 106 GPN H8 H N N 107 GPN HN1 H N N 108 GPN HN21 H N N 109 GPN HN22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LYN N N N N 114 LYN CA C N S 115 LYN CB C N N 116 LYN CG C N N 117 LYN CD C N N 118 LYN CE C N N 119 LYN NZ N N N 120 LYN C C N N 121 LYN O O N N 122 LYN NT N N N 123 LYN H H N N 124 LYN H2 H N N 125 LYN HA H N N 126 LYN HB2 H N N 127 LYN HB3 H N N 128 LYN HG2 H N N 129 LYN HG3 H N N 130 LYN HD2 H N N 131 LYN HD3 H N N 132 LYN HE2 H N N 133 LYN HE3 H N N 134 LYN HZ1 H N N 135 LYN HZ2 H N N 136 LYN HZ3 H N N 137 LYN HNT1 H N N 138 LYN HNT2 H N N 139 TPN "C8'" C N N 140 TPN "C7'" C N N 141 TPN "O7'" O N N 142 TPN "C5'" C N N 143 TPN C C N N 144 TPN O O N N 145 TPN OXT O N N 146 TPN "N4'" N N N 147 TPN "C3'" C N N 148 TPN "C2'" C N N 149 TPN N N N N 150 TPN N1 N N N 151 TPN C6 C N N 152 TPN C2 C N N 153 TPN O2 O N N 154 TPN N3 N N N 155 TPN C4 C N N 156 TPN O4 O N N 157 TPN C5 C N N 158 TPN C5M C N N 159 TPN "H8'1" H N N 160 TPN "H8'2" H N N 161 TPN "H5'1" H N N 162 TPN "H5'2" H N N 163 TPN HXT H N N 164 TPN "H3'1" H N N 165 TPN "H3'2" H N N 166 TPN "H2'1" H N N 167 TPN "H2'2" H N N 168 TPN H H N N 169 TPN H2 H N N 170 TPN H3 H N N 171 TPN H6 H N N 172 TPN HN3 H N N 173 TPN HM51 H N N 174 TPN HM52 H N N 175 TPN HM53 H N N 176 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal APN "C8'" "C7'" sing N N 1 APN "C8'" N9 sing N N 2 APN "C8'" "H8'1" sing N N 3 APN "C8'" "H8'2" sing N N 4 APN "C7'" "O7'" doub N N 5 APN "C7'" "N4'" sing N N 6 APN "C5'" C sing N N 7 APN "C5'" "N4'" sing N N 8 APN "C5'" "H5'1" sing N N 9 APN "C5'" "H5'2" sing N N 10 APN C O doub N N 11 APN C OXT sing N N 12 APN OXT HXT sing N N 13 APN "N4'" "C3'" sing N N 14 APN "C3'" "C2'" sing N N 15 APN "C3'" "H3'1" sing N N 16 APN "C3'" "H3'2" sing N N 17 APN "C2'" N sing N N 18 APN "C2'" "H2'1" sing N N 19 APN "C2'" "H2'2" sing N N 20 APN N H sing N N 21 APN N H2 sing N N 22 APN N H3 sing N N 23 APN N9 C8 sing Y N 24 APN N9 C4 sing Y N 25 APN C8 N7 doub Y N 26 APN C8 H8 sing N N 27 APN N7 C5 sing Y N 28 APN C5 C6 sing Y N 29 APN C5 C4 doub Y N 30 APN C6 N6 sing N N 31 APN C6 N1 doub Y N 32 APN N6 HN61 sing N N 33 APN N6 HN62 sing N N 34 APN N1 C2 sing Y N 35 APN C2 N3 doub Y N 36 APN C2 H21 sing N N 37 APN N3 C4 sing Y N 38 CPN "C8'" "C7'" sing N N 39 CPN "C8'" N1 sing N N 40 CPN "C8'" "H8'1" sing N N 41 CPN "C8'" "H8'2" sing N N 42 CPN "C7'" "O7'" doub N N 43 CPN "C7'" "N4'" sing N N 44 CPN "C5'" C sing N N 45 CPN "C5'" "N4'" sing N N 46 CPN "C5'" "H5'1" sing N N 47 CPN "C5'" "H5'2" sing N N 48 CPN C O doub N N 49 CPN C OXT sing N N 50 CPN OXT HXT sing N N 51 CPN "N4'" "C3'" sing N N 52 CPN "C3'" "C2'" sing N N 53 CPN "C3'" "H3'1" sing N N 54 CPN "C3'" "H3'2" sing N N 55 CPN "C2'" N sing N N 56 CPN "C2'" "H2'1" sing N N 57 CPN "C2'" "H2'2" sing N N 58 CPN N H sing N N 59 CPN N H2 sing N N 60 CPN N H3 sing N N 61 CPN N1 C2 sing N N 62 CPN N1 C6 sing N N 63 CPN C2 N3 sing N N 64 CPN C2 O2 doub N N 65 CPN N3 C4 doub N N 66 CPN C4 C5 sing N N 67 CPN C4 N4 sing N N 68 CPN C5 C6 doub N N 69 CPN C5 H5 sing N N 70 CPN C6 H6 sing N N 71 CPN N4 HN41 sing N N 72 CPN N4 HN42 sing N N 73 GPN "C8'" "C7'" sing N N 74 GPN "C8'" N9 sing N N 75 GPN "C8'" "H8'1" sing N N 76 GPN "C8'" "H8'2" sing N N 77 GPN "C7'" "O7'" doub N N 78 GPN "C7'" "N4'" sing N N 79 GPN "C5'" C sing N N 80 GPN "C5'" "N4'" sing N N 81 GPN "C5'" "H5'1" sing N N 82 GPN "C5'" "H5'2" sing N N 83 GPN C O doub N N 84 GPN C OXT sing N N 85 GPN OXT HXT sing N N 86 GPN "N4'" "C3'" sing N N 87 GPN "C3'" "C2'" sing N N 88 GPN "C3'" "H3'1" sing N N 89 GPN "C3'" "H3'2" sing N N 90 GPN "C2'" N sing N N 91 GPN "C2'" "H2'1" sing N N 92 GPN "C2'" "H2'2" sing N N 93 GPN N H sing N N 94 GPN N H2 sing N N 95 GPN N H3 sing N N 96 GPN N9 C8 sing Y N 97 GPN N9 C4 sing Y N 98 GPN C8 N7 doub Y N 99 GPN C8 H8 sing N N 100 GPN N7 C5 sing Y N 101 GPN C5 C6 sing N N 102 GPN C5 C4 doub Y N 103 GPN C6 O6 doub N N 104 GPN C6 N1 sing N N 105 GPN N1 C2 sing N N 106 GPN N1 HN1 sing N N 107 GPN C2 N2 sing N N 108 GPN C2 N3 doub N N 109 GPN N2 HN21 sing N N 110 GPN N2 HN22 sing N N 111 GPN N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 LYN N CA sing N N 115 LYN N H sing N N 116 LYN N H2 sing N N 117 LYN CA CB sing N N 118 LYN CA C sing N N 119 LYN CA HA sing N N 120 LYN CB CG sing N N 121 LYN CB HB2 sing N N 122 LYN CB HB3 sing N N 123 LYN CG CD sing N N 124 LYN CG HG2 sing N N 125 LYN CG HG3 sing N N 126 LYN CD CE sing N N 127 LYN CD HD2 sing N N 128 LYN CD HD3 sing N N 129 LYN CE NZ sing N N 130 LYN CE HE2 sing N N 131 LYN CE HE3 sing N N 132 LYN NZ HZ1 sing N N 133 LYN NZ HZ2 sing N N 134 LYN NZ HZ3 sing N N 135 LYN C O doub N N 136 LYN C NT sing N N 137 LYN NT HNT1 sing N N 138 LYN NT HNT2 sing N N 139 TPN "C8'" "C7'" sing N N 140 TPN "C8'" N1 sing N N 141 TPN "C8'" "H8'1" sing N N 142 TPN "C8'" "H8'2" sing N N 143 TPN "C7'" "O7'" doub N N 144 TPN "C7'" "N4'" sing N N 145 TPN "C5'" C sing N N 146 TPN "C5'" "N4'" sing N N 147 TPN "C5'" "H5'1" sing N N 148 TPN "C5'" "H5'2" sing N N 149 TPN C O doub N N 150 TPN C OXT sing N N 151 TPN OXT HXT sing N N 152 TPN "N4'" "C3'" sing N N 153 TPN "C3'" "C2'" sing N N 154 TPN "C3'" "H3'1" sing N N 155 TPN "C3'" "H3'2" sing N N 156 TPN "C2'" N sing N N 157 TPN "C2'" "H2'1" sing N N 158 TPN "C2'" "H2'2" sing N N 159 TPN N H sing N N 160 TPN N H2 sing N N 161 TPN N H3 sing N N 162 TPN N1 C6 sing N N 163 TPN N1 C2 sing N N 164 TPN C6 C5 doub N N 165 TPN C6 H6 sing N N 166 TPN C2 O2 doub N N 167 TPN C2 N3 sing N N 168 TPN N3 C4 sing N N 169 TPN N3 HN3 sing N N 170 TPN C4 O4 doub N N 171 TPN C4 C5 sing N N 172 TPN C5 C5M sing N N 173 TPN C5M HM51 sing N N 174 TPN C5M HM52 sing N N 175 TPN C5M HM53 sing N N 176 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 22K05350 1 'Japan Society for the Promotion of Science (JSPS)' Japan 22KJ1567 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3MBS _pdbx_initial_refinement_model.details 'antiparallel PNA-PNA duplex' # _atom_sites.entry_id 9L5Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026272 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002246 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018915 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018816 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ # loop_ #