HEADER DNA BINDING PROTEIN/DNA 28-DEC-24 9L8U TITLE CRYO-EM STRUCTURE OF ASFV DNA POLYMERASE IN A DNA REPLICATION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEQUENCE REFERENCE FOR STRAIN 'ASFARVIRIDAE' IS NOT COMPND 7 AVAILABLE IN UNIPROT AT THE TIME OF BIOCURATION. CURRENT SEQUENCE COMPND 8 REFERENCE IS FROM UNIPROT ID A0A7D5JBM0.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(P*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(P*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*A)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASFARVIRIDAE; SOURCE 3 ORGANISM_TAXID: 137992; SOURCE 4 GENE: G1211R; SOURCE 5 EXPRESSION_SYSTEM: EUKARYOTA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 2759; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ASFARVIRIDAE; SOURCE 9 ORGANISM_TAXID: 137992; SOURCE 10 EXPRESSION_SYSTEM: EUKARYOTA; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 2759; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: ASFARVIRIDAE; SOURCE 14 ORGANISM_TAXID: 137992; SOURCE 15 EXPRESSION_SYSTEM: EUKARYOTA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 2759 KEYWDS VIRUS, DNA POLYMERASE, ASFV, DNA BINDING PROTEIN/DNA, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Z.HU,R.YAN REVDAT 1 31-DEC-25 9L8U 0 JRNL AUTH Z.HU,R.YAN JRNL TITL CRYO-EM STRUCTURE OF ASFV DNA POLYMERASE IN A DNA JRNL TITL 2 REPLICATION STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.530 REMARK 3 NUMBER OF PARTICLES : 696619 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9L8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055192. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ASFV DNA POLYMERASE WITH DSDNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI POLARA 300 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 156.25 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 910 REMARK 465 ILE A 911 REMARK 465 GLN A 912 REMARK 465 GLY A 913 REMARK 465 HIS A 914 REMARK 465 ARG A 915 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 1 P DT B 1 OP3 -0.124 REMARK 500 DA C 1 P DA C 1 OP3 -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 37 -56.58 -126.12 REMARK 500 ASP A 199 51.77 33.92 REMARK 500 SER A 322 31.13 -91.10 REMARK 500 LEU A 323 -102.26 61.66 REMARK 500 TYR A 399 -71.32 -62.43 REMARK 500 THR A 688 -68.80 61.79 REMARK 500 GLN A 908 62.47 -111.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DCP C 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 211 OD2 REMARK 620 2 ASP A 424 OD2 97.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 517 OD1 REMARK 620 2 ASP A 517 OD2 58.1 REMARK 620 3 PHE A 518 O 90.7 110.7 REMARK 620 4 ASP A 689 OD2 88.0 122.7 114.7 REMARK 620 5 DCP A1001 O2A 120.5 78.7 145.6 82.9 REMARK 620 6 DCP A1001 O2B 160.4 141.5 80.6 79.9 73.5 REMARK 620 7 DCP A1001 O3G 124.9 85.9 62.7 146.1 86.0 66.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62891 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ASFV DNA POLYMERASE BOUND WITH DNA DBREF1 9L8U A 2 993 UNP A0A7D5JBM0_ASF DBREF2 9L8U A A0A7D5JBM0 2 993 DBREF 9L8U B 1 16 PDB 9L8U 9L8U 1 16 DBREF 9L8U C 1 11 PDB 9L8U 9L8U 1 11 SEQRES 1 A 992 ILE SER ILE MET ASP ARG SER GLU ILE VAL ALA ARG GLU SEQRES 2 A 992 ASN PRO VAL ILE THR GLN ARG VAL THR ASN LEU LEU GLN SEQRES 3 A 992 THR ASN ALA PRO LEU LEU PHE MET PRO ILE ASP ILE HIS SEQRES 4 A 992 GLU VAL ARG TYR GLY ALA TYR THR LEU PHE MET TYR GLY SEQRES 5 A 992 SER LEU GLU ASN GLY TYR LYS ALA GLU VAL ARG ILE GLU SEQRES 6 A 992 ASN ILE PRO VAL PHE PHE ASP VAL GLN ILE GLU PHE ASN SEQRES 7 A 992 ASP THR ASN GLN LEU PHE LEU LYS SER LEU LEU THR ALA SEQRES 8 A 992 GLU ASN ILE VAL TYR GLU ARG LEU GLU THR LEU THR GLN SEQRES 9 A 992 ARG PRO VAL MET GLY TYR ARG GLU LYS GLU LYS GLU PHE SEQRES 10 A 992 ALA PRO TYR ILE ARG ILE PHE PHE LYS SER LEU TYR GLU SEQRES 11 A 992 ARG ARG LYS ALA ILE THR TYR LEU ASN ASN MET GLY TYR SEQRES 12 A 992 ASN THR ALA ALA ASP ASP THR THR CYS TYR TYR ARG MET SEQRES 13 A 992 VAL SER ARG GLU LEU LYS LEU PRO LEU THR SER TRP ILE SEQRES 14 A 992 GLN LEU GLN HIS TYR SER TYR GLU PRO ARG GLY LEU VAL SEQRES 15 A 992 HIS ARG PHE SER VAL THR PRO GLU ASP LEU VAL SER TYR SEQRES 16 A 992 GLN ASN ASP GLY PRO THR ASP HIS SER ILE VAL MET ALA SEQRES 17 A 992 TYR ASP ILE GLU THR TYR SER PRO VAL LYS GLY THR VAL SEQRES 18 A 992 PRO ASP PRO ASN GLN ALA ASN ASP VAL VAL PHE MET ILE SEQRES 19 A 992 CYS MET ARG ILE PHE TRP ILE HIS SER THR GLU PRO LEU SEQRES 20 A 992 ALA SER THR CYS ILE THR MET ALA PRO CYS LYS LYS SER SEQRES 21 A 992 SER GLU TRP THR THR ILE LEU CYS SER SER GLU LYS ASN SEQRES 22 A 992 LEU LEU LEU SER PHE ALA GLU GLN PHE SER ARG TRP ALA SEQRES 23 A 992 PRO ASP ILE CYS THR GLY PHE ASN ASP SER ARG TYR ASP SEQRES 24 A 992 TRP PRO PHE ILE VAL GLU LYS SER MET GLN HIS GLY ILE SEQRES 25 A 992 LEU GLU GLU ILE PHE ASN LYS MET SER LEU PHE TRP HIS SEQRES 26 A 992 GLN LYS LEU ASP THR ILE LEU LYS CYS TYR TYR VAL LYS SEQRES 27 A 992 GLU LYS ARG VAL LYS ILE SER ALA GLU LYS SER ILE ILE SEQRES 28 A 992 SER SER PHE LEU HIS THR PRO GLY CYS LEU PRO ILE ASP SEQRES 29 A 992 VAL ARG ASN MET CYS MET GLN LEU TYR PRO LYS ALA GLU SEQRES 30 A 992 LYS THR SER LEU LYS ALA PHE LEU GLU ASN CYS GLY LEU SEQRES 31 A 992 ASP SER LYS VAL ASP LEU PRO TYR HIS LEU MET TRP LYS SEQRES 32 A 992 TYR TYR GLU THR ARG ASP SER GLU LYS ILE ALA ASP VAL SEQRES 33 A 992 ALA TYR TYR CYS ILE ILE ASP ALA GLN ARG CYS GLN ASP SEQRES 34 A 992 LEU LEU VAL ARG HIS ASN VAL ILE PRO ASP ARG ARG GLU SEQRES 35 A 992 VAL GLY ILE LEU SER TYR THR SER LEU TYR ASP CYS ILE SEQRES 36 A 992 TYR TYR ALA GLY GLY HIS LYS VAL CYS ASN MET LEU ILE SEQRES 37 A 992 ALA TYR ALA ILE HIS ASP GLU TYR GLY ARG ILE ALA CYS SEQRES 38 A 992 SER THR ILE ALA ARG GLY LYS ARG GLU HIS GLY LYS TYR SEQRES 39 A 992 PRO GLY ALA PHE VAL ILE ASP PRO VAL LYS GLY LEU GLU SEQRES 40 A 992 GLN ASP LYS PRO THR THR GLY LEU ASP PHE ALA SER LEU SEQRES 41 A 992 TYR PRO SER LEU ILE MET ALA TYR ASN PHE SER PRO GLU SEQRES 42 A 992 LYS PHE VAL ALA SER ARG ASP GLU ALA ASN SER LEU MET SEQRES 43 A 992 ALA LYS GLY GLU SER LEU HIS TYR VAL SER PHE HIS PHE SEQRES 44 A 992 ASN ASN ARG LEU VAL GLU GLY TRP PHE VAL TRP HIS ASN SEQRES 45 A 992 ASN VAL PRO ASP LYS MET GLY LEU TYR PRO LYS VAL LEU SEQRES 46 A 992 ILE ASP LEU LEU ASN LYS ARG THR ALA LEU LYS GLN GLU SEQRES 47 A 992 LEU LYS LYS LEU GLY GLU LYS LYS GLU CYS ILE HIS GLU SEQRES 48 A 992 SER HIS PRO GLY PHE LYS GLU LEU GLN PHE ARG HIS ALA SEQRES 49 A 992 MET VAL ASP ALA LYS GLN LYS ALA LEU LYS ILE PHE MET SEQRES 50 A 992 ASN THR PHE TYR GLY GLU ALA GLY ASN ASN LEU SER PRO SEQRES 51 A 992 PHE PHE LEU LEU PRO LEU ALA GLY GLY VAL THR SER SER SEQRES 52 A 992 GLY GLN TYR ASN LEU LYS LEU VAL TYR ASN PHE VAL ILE SEQRES 53 A 992 ASN LYS GLY TYR GLY ILE LYS TYR GLY ASP THR ASP SER SEQRES 54 A 992 LEU TYR ILE THR CYS PRO ASP SER LEU TYR THR GLU VAL SEQRES 55 A 992 THR ASP ALA TYR LEU ASN SER GLN LYS THR ILE LYS HIS SEQRES 56 A 992 TYR GLU GLN LEU CYS HIS GLU LYS VAL LEU LEU SER MET SEQRES 57 A 992 LYS ALA MET SER THR LEU CYS ALA GLU VAL ASN GLU TYR SEQRES 58 A 992 LEU ARG GLN ASP ASN GLY THR SER TYR LEU ARG MET ALA SEQRES 59 A 992 TYR GLU GLU VAL LEU PHE PRO VAL CYS PHE THR GLY LYS SEQRES 60 A 992 LYS LYS TYR TYR GLY ILE ALA HIS VAL ASN THR PRO ASN SEQRES 61 A 992 PHE ASN THR LYS GLU LEU PHE ILE ARG GLY ILE ASP ILE SEQRES 62 A 992 ILE LYS GLN GLY GLN THR LYS LEU THR LYS THR ILE GLY SEQRES 63 A 992 THR ARG ILE MET GLU GLU SER MET LYS LEU ARG ARG PRO SEQRES 64 A 992 GLU ASP HIS ARG PRO PRO LEU ILE GLU ILE VAL LYS THR SEQRES 65 A 992 VAL LEU LYS ASP ALA VAL VAL ASN MET LYS GLN TRP ASN SEQRES 66 A 992 PHE GLU ASP PHE ILE GLN THR ASP ALA TRP ARG PRO ASP SEQRES 67 A 992 LYS ASP ASN LYS ALA VAL GLN ILE PHE MET SER ARG MET SEQRES 68 A 992 HIS ALA ARG ARG GLU GLN LEU LYS LYS HIS GLY ALA ALA SEQRES 69 A 992 ALA SER GLN PHE ALA GLU PRO GLU PRO GLY GLU ARG PHE SEQRES 70 A 992 SER TYR VAL ILE VAL GLU LYS GLN VAL GLN PHE ASP ILE SEQRES 71 A 992 GLN GLY HIS ARG THR ASP SER SER ARG LYS GLY ASP LYS SEQRES 72 A 992 MET GLU TYR VAL SER GLU ALA LYS ALA LYS ASN LEU PRO SEQRES 73 A 992 ILE ASP ILE LEU PHE TYR ILE ASN ASN TYR VAL LEU GLY SEQRES 74 A 992 LEU CYS ALA ARG PHE ILE ASN GLU ASN GLU GLU PHE GLN SEQRES 75 A 992 PRO PRO ASP ASN VAL SER ASN LYS ASP GLU TYR ALA GLN SEQRES 76 A 992 ARG ARG ALA LYS SER TYR LEU GLN LYS PHE VAL GLN SER SEQRES 77 A 992 ILE HIS PRO LYS SEQRES 1 B 16 DT DA DA DG DG DT DA DG DG DG DG DA DG SEQRES 2 B 16 DG DA DT SEQRES 1 C 11 DA DT DC DC DT DC DC DC DC DT DA HET DCP A1001 28 HET MG A1002 1 HET MG A1003 1 HET DCP C 101 18 HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 DCP 2(C9 H16 N3 O13 P3) FORMUL 5 MG 2(MG 2+) HELIX 1 AA1 ASP A 6 ASN A 15 1 10 HELIX 2 AA2 ASN A 15 ASN A 29 1 15 HELIX 3 AA3 ASN A 79 GLU A 93 1 15 HELIX 4 AA4 SER A 128 GLY A 143 1 16 HELIX 5 AA5 TYR A 154 LEU A 162 1 9 HELIX 6 AA6 THR A 189 GLU A 191 5 3 HELIX 7 AA7 SER A 271 ALA A 287 1 17 HELIX 8 AA8 TYR A 299 GLY A 312 1 14 HELIX 9 AA9 ILE A 313 SER A 322 1 10 HELIX 10 AB1 LYS A 328 CYS A 335 1 8 HELIX 11 AB2 VAL A 366 TYR A 374 1 9 HELIX 12 AB3 SER A 381 CYS A 389 1 9 HELIX 13 AB4 PRO A 398 ARG A 409 1 12 HELIX 14 AB5 ASP A 410 HIS A 435 1 26 HELIX 15 AB6 ASN A 436 TYR A 449 1 14 HELIX 16 AB7 SER A 451 TYR A 458 1 8 HELIX 17 AB8 GLY A 460 ILE A 473 1 14 HELIX 18 AB9 HIS A 474 GLY A 478 5 5 HELIX 19 AC1 SER A 520 ASN A 530 1 11 HELIX 20 AC2 SER A 532 GLU A 534 5 3 HELIX 21 AC3 SER A 539 LYS A 549 1 11 HELIX 22 AC4 GLY A 580 GLU A 608 1 29 HELIX 23 AC5 GLY A 616 ASN A 647 1 32 HELIX 24 AC6 LEU A 654 LYS A 679 1 26 HELIX 25 AC7 PRO A 696 LEU A 699 5 4 HELIX 26 AC8 TYR A 700 SER A 710 1 11 HELIX 27 AC9 THR A 713 GLY A 748 1 36 HELIX 28 AD1 ILE A 792 LYS A 796 5 5 HELIX 29 AD2 THR A 800 MET A 815 1 16 HELIX 30 AD3 PRO A 826 ASN A 841 1 16 HELIX 31 AD4 MET A 842 TRP A 845 5 4 HELIX 32 AD5 ASN A 846 PHE A 850 5 5 HELIX 33 AD6 ASN A 862 GLY A 883 1 22 HELIX 34 AD7 ALA A 886 ALA A 890 5 5 HELIX 35 AD8 VAL A 928 ASN A 935 1 8 HELIX 36 AD9 ASP A 939 TYR A 947 1 9 HELIX 37 AE1 TYR A 947 ASN A 957 1 11 HELIX 38 AE2 ASN A 970 HIS A 991 1 22 SHEET 1 AA1 7 SER A 176 ARG A 180 0 SHEET 2 AA1 7 VAL A 183 VAL A 188 -1 O VAL A 183 N ARG A 180 SHEET 3 AA1 7 LYS A 60 ILE A 65 1 N ARG A 64 O PHE A 186 SHEET 4 AA1 7 LEU A 49 LEU A 55 -1 N MET A 51 O VAL A 63 SHEET 5 AA1 7 LEU A 32 GLU A 41 -1 N HIS A 40 O PHE A 50 SHEET 6 AA1 7 ILE A 170 LEU A 172 -1 O LEU A 172 N LEU A 32 SHEET 7 AA1 7 LEU A 193 SER A 195 -1 O VAL A 194 N GLN A 171 SHEET 1 AA2 5 THR A 146 ALA A 147 0 SHEET 2 AA2 5 VAL A 70 VAL A 74 -1 N ASP A 73 O ALA A 147 SHEET 3 AA2 5 ALA A 119 PHE A 126 -1 O ILE A 124 N PHE A 72 SHEET 4 AA2 5 LEU A 100 PRO A 107 -1 N GLN A 105 O ALA A 119 SHEET 5 AA2 5 ILE A 480 ALA A 481 1 O ALA A 481 N ARG A 106 SHEET 1 AA3 6 THR A 265 LEU A 268 0 SHEET 2 AA3 6 PRO A 247 THR A 254 1 N CYS A 252 O ILE A 267 SHEET 3 AA3 6 VAL A 231 TRP A 241 -1 N ILE A 239 O LEU A 248 SHEET 4 AA3 6 ILE A 206 TYR A 215 -1 N TYR A 215 O VAL A 231 SHEET 5 AA3 6 ILE A 290 GLY A 293 1 O THR A 292 N MET A 208 SHEET 6 AA3 6 LEU A 362 ASP A 365 1 O ILE A 364 N CYS A 291 SHEET 1 AA4 2 TYR A 337 SER A 346 0 SHEET 2 AA4 2 LYS A 349 LEU A 356 -1 O ILE A 351 N VAL A 343 SHEET 1 AA5 6 VAL A 500 ILE A 501 0 SHEET 2 AA5 6 GLY A 682 ASP A 687 -1 O GLY A 686 N ILE A 501 SHEET 3 AA5 6 SER A 690 THR A 694 -1 O THR A 694 N GLY A 682 SHEET 4 AA5 6 THR A 513 PHE A 518 -1 N LEU A 516 O LEU A 691 SHEET 5 AA5 6 MET A 754 GLY A 767 -1 O LEU A 760 N THR A 513 SHEET 6 AA5 6 GLY A 506 GLU A 508 -1 N GLY A 506 O PHE A 765 SHEET 1 AA6 7 VAL A 500 ILE A 501 0 SHEET 2 AA6 7 GLY A 682 ASP A 687 -1 O GLY A 686 N ILE A 501 SHEET 3 AA6 7 SER A 690 THR A 694 -1 O THR A 694 N GLY A 682 SHEET 4 AA6 7 THR A 513 PHE A 518 -1 N LEU A 516 O LEU A 691 SHEET 5 AA6 7 MET A 754 GLY A 767 -1 O LEU A 760 N THR A 513 SHEET 6 AA6 7 LYS A 770 HIS A 776 -1 O TYR A 772 N CYS A 764 SHEET 7 AA6 7 PHE A 788 ARG A 790 -1 O ARG A 790 N TYR A 771 SHEET 1 AA7 3 PHE A 536 VAL A 537 0 SHEET 2 AA7 3 ARG A 563 VAL A 570 -1 O TRP A 568 N VAL A 537 SHEET 3 AA7 3 LEU A 553 PHE A 560 -1 N PHE A 558 O VAL A 565 SHEET 1 AA8 3 GLN A 852 ALA A 855 0 SHEET 2 AA8 3 ARG A 897 ILE A 902 -1 O TYR A 900 N GLN A 852 SHEET 3 AA8 3 MET A 925 TYR A 927 -1 O GLU A 926 N VAL A 901 LINK OD2 ASP A 211 MG MG A1003 1555 1555 2.67 LINK OD2 ASP A 424 MG MG A1003 1555 1555 1.71 LINK OD1 ASP A 517 MG MG A1002 1555 1555 1.84 LINK OD2 ASP A 517 MG MG A1002 1555 1555 2.50 LINK O PHE A 518 MG MG A1002 1555 1555 2.20 LINK OD2 ASP A 689 MG MG A1002 1555 1555 2.13 LINK O2A DCP A1001 MG MG A1002 1555 1555 2.21 LINK O2B DCP A1001 MG MG A1002 1555 1555 2.44 LINK O3G DCP A1001 MG MG A1002 1555 1555 2.63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 8043 LYS A 993 TER 8386 DT B 16 TER 8604 DA C 11 HETATM 8605 N1 DCP A1001 107.006 97.685 96.456 1.00 20.00 N HETATM 8606 C2 DCP A1001 107.881 97.678 97.445 1.00 20.00 C HETATM 8607 N3 DCP A1001 107.848 98.614 98.357 1.00 20.00 N HETATM 8608 C4 DCP A1001 106.965 99.576 98.345 1.00 20.00 C HETATM 8609 C5 DCP A1001 106.033 99.595 97.321 1.00 20.00 C HETATM 8610 C6 DCP A1001 106.081 98.607 96.368 1.00 20.00 C HETATM 8611 O2 DCP A1001 108.693 96.851 97.517 1.00 20.00 O HETATM 8612 N4 DCP A1001 106.960 100.598 99.379 1.00 20.00 N HETATM 8613 C1' DCP A1001 107.053 96.642 95.474 1.00 20.00 C HETATM 8614 C2' DCP A1001 106.387 95.360 96.163 1.00 20.00 C HETATM 8615 C3' DCP A1001 105.270 95.135 95.565 1.00 20.00 C HETATM 8616 C4' DCP A1001 105.602 95.572 94.143 1.00 20.00 C HETATM 8617 O4' DCP A1001 106.310 96.900 94.423 1.00 20.00 O HETATM 8618 O3' DCP A1001 104.935 93.671 95.622 1.00 20.00 O HETATM 8619 C5' DCP A1001 104.373 95.737 93.443 1.00 20.00 C HETATM 8620 O5' DCP A1001 103.932 97.062 93.560 1.00 20.00 O HETATM 8621 PA DCP A1001 102.505 97.394 94.284 1.00 20.00 P HETATM 8622 O1A DCP A1001 102.459 98.888 94.576 1.00 20.00 O1- HETATM 8623 O2A DCP A1001 101.326 97.025 93.400 1.00 20.00 O HETATM 8624 O3A DCP A1001 102.395 96.551 95.695 1.00 20.00 O HETATM 8625 PB DCP A1001 101.695 95.094 95.826 1.00 20.00 P HETATM 8626 O1B DCP A1001 102.541 94.251 96.695 1.00 20.00 O1- HETATM 8627 O2B DCP A1001 101.569 94.465 94.469 1.00 20.00 O1- HETATM 8628 O3B DCP A1001 100.240 95.247 96.485 1.00 20.00 O HETATM 8629 PG DCP A1001 98.995 95.821 95.668 1.00 20.00 P HETATM 8630 O1G DCP A1001 97.746 95.664 96.467 1.00 20.00 O HETATM 8631 O2G DCP A1001 99.220 97.270 95.359 1.00 20.00 O1- HETATM 8632 O3G DCP A1001 98.857 95.044 94.376 1.00 20.00 O1- HETATM 8633 MG MG A1002 100.562 95.221 92.382 1.00 30.00 MG2+ HETATM 8634 MG MG A1003 99.637 127.554 120.827 1.00 30.00 MG2+ HETATM 8635 N1 DCP C 101 107.406 100.628 93.310 1.00 20.00 N HETATM 8636 C2 DCP C 101 108.500 100.154 94.044 1.00 20.00 C HETATM 8637 N3 DCP C 101 108.749 100.839 95.147 1.00 20.00 N HETATM 8638 C4 DCP C 101 108.004 101.891 95.536 1.00 20.00 C HETATM 8639 C5 DCP C 101 106.940 102.338 94.821 1.00 20.00 C HETATM 8640 C6 DCP C 101 106.656 101.665 93.677 1.00 20.00 C HETATM 8641 O2 DCP C 101 109.196 99.132 93.692 1.00 20.00 O HETATM 8642 N4 DCP C 101 108.275 102.567 96.648 1.00 20.00 N HETATM 8643 C1' DCP C 101 107.088 99.931 92.085 1.00 20.00 C HETATM 8644 C2' DCP C 101 106.212 98.772 92.383 1.00 20.00 C HETATM 8645 C3' DCP C 101 104.896 99.029 91.761 1.00 20.00 C HETATM 8646 C4' DCP C 101 105.173 100.089 90.802 1.00 20.00 C HETATM 8647 O4' DCP C 101 106.324 100.732 91.237 1.00 20.00 O HETATM 8648 C5' DCP C 101 104.071 101.065 90.966 1.00 20.00 C HETATM 8649 O5' DCP C 101 104.308 101.882 89.876 1.00 20.00 O HETATM 8650 PA DCP C 101 103.104 102.557 89.188 1.00 20.00 P HETATM 8651 O1A DCP C 101 102.590 103.439 90.250 1.00 20.00 O HETATM 8652 O2A DCP C 101 103.714 103.181 87.985 1.00 20.00 O CONECT 1744 8634 CONECT 3478 8634 CONECT 4208 8633 CONECT 4209 8633 CONECT 4213 8633 CONECT 5597 8633 CONECT 8605 8606 8610 8613 CONECT 8606 8605 8607 8611 CONECT 8607 8606 8608 CONECT 8608 8607 8609 8612 CONECT 8609 8608 8610 CONECT 8610 8605 8609 CONECT 8611 8606 CONECT 8612 8608 CONECT 8613 8605 8614 8617 CONECT 8614 8613 8615 CONECT 8615 8614 8616 8618 CONECT 8616 8615 8617 8619 CONECT 8617 8613 8616 CONECT 8618 8615 CONECT 8619 8616 8620 CONECT 8620 8619 8621 CONECT 8621 8620 8622 8623 8624 CONECT 8622 8621 CONECT 8623 8621 8633 CONECT 8624 8621 8625 CONECT 8625 8624 8626 8627 8628 CONECT 8626 8625 CONECT 8627 8625 8633 CONECT 8628 8625 8629 CONECT 8629 8628 8630 8631 8632 CONECT 8630 8629 CONECT 8631 8629 CONECT 8632 8629 8633 CONECT 8633 4208 4209 4213 5597 CONECT 8633 8623 8627 8632 CONECT 8634 1744 3478 CONECT 8635 8636 8640 8643 CONECT 8636 8635 8637 8641 CONECT 8637 8636 8638 CONECT 8638 8637 8639 8642 CONECT 8639 8638 8640 CONECT 8640 8635 8639 CONECT 8641 8636 CONECT 8642 8638 CONECT 8643 8635 8644 8647 CONECT 8644 8643 8645 CONECT 8645 8644 8646 CONECT 8646 8645 8647 8648 CONECT 8647 8643 8646 CONECT 8648 8646 8649 CONECT 8649 8648 8650 CONECT 8650 8649 8651 8652 CONECT 8651 8650 CONECT 8652 8650 MASTER 186 0 4 38 39 0 0 6 8649 3 55 80 END