data_9LJ0 # _entry.id 9LJ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9LJ0 pdb_00009lj0 10.2210/pdb9lj0/pdb WWPDB D_1300055663 ? ? EMDB EMD-63129 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-21 ? 2 'EM metadata' 1 0 2026-01-21 ? 3 FSC 1 0 2026-01-21 ? 4 'Half map' 1 0 2026-01-21 1 5 'Half map' 1 0 2026-01-21 2 6 Image 1 0 2026-01-21 ? 7 'Primary map' 1 0 2026-01-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9LJ0 _pdbx_database_status.recvd_initial_deposition_date 2025-01-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 3).' _pdbx_database_related.db_id EMD-63129 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email yaoyuxuan@sjtu.edu.cn _pdbx_contact_author.name_first Dan _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yao, Y.X.' 1 ? 'Zhao, Q.Y.' 2 ? 'Liu, C.' 3 ? 'Li, D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 123 _citation.language ? _citation.page_first e2515454123 _citation.page_last e2515454123 _citation.title 'Biopsy-resolved cryo-EM structures of amyloid fibrils provide molecular insights into AL amyloidosis.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2515454123 _citation.pdbx_database_id_PubMed 41493812 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yao, Y.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Yao, S.' 3 0000-0002-4505-4761 primary 'Xu, Y.' 4 0000-0001-9969-613X primary 'Liu, K.' 5 0009-0000-2392-0895 primary 'Cao, T.' 6 0009-0008-7124-1924 primary 'Sun, B.' 7 0000-0002-4590-7795 primary 'Zhou, J.' 8 ? primary 'Liu, C.' 9 0000-0003-3425-6672 primary 'Li, D.' 10 0000-0002-1609-1539 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Monoclonal immunoglobulin light chains (LC)' _entity.formula_weight 13642.956 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNNVYWYQQLPGMAPKLLIYNNFQRPSGVSDRFSGSKSGTSASLAISGLR SEDEADYYCAAWDDSLSGLYVFGTATKVTVLSQPKANPTVTLFPPSSEE ; _entity_poly.pdbx_seq_one_letter_code_can ;QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNNVYWYQQLPGMAPKLLIYNNFQRPSGVSDRFSGSKSGTSASLAISGLR SEDEADYYCAAWDDSLSGLYVFGTATKVTVLSQPKANPTVTLFPPSSEE ; _entity_poly.pdbx_strand_id C,A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 VAL n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 PRO n 1 8 PRO n 1 9 SER n 1 10 ALA n 1 11 SER n 1 12 GLY n 1 13 THR n 1 14 PRO n 1 15 GLY n 1 16 GLN n 1 17 ARG n 1 18 VAL n 1 19 THR n 1 20 ILE n 1 21 SER n 1 22 CYS n 1 23 SER n 1 24 GLY n 1 25 SER n 1 26 SER n 1 27 SER n 1 28 ASN n 1 29 ILE n 1 30 GLY n 1 31 SER n 1 32 ASN n 1 33 ASN n 1 34 VAL n 1 35 TYR n 1 36 TRP n 1 37 TYR n 1 38 GLN n 1 39 GLN n 1 40 LEU n 1 41 PRO n 1 42 GLY n 1 43 MET n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 LEU n 1 48 LEU n 1 49 ILE n 1 50 TYR n 1 51 ASN n 1 52 ASN n 1 53 PHE n 1 54 GLN n 1 55 ARG n 1 56 PRO n 1 57 SER n 1 58 GLY n 1 59 VAL n 1 60 SER n 1 61 ASP n 1 62 ARG n 1 63 PHE n 1 64 SER n 1 65 GLY n 1 66 SER n 1 67 LYS n 1 68 SER n 1 69 GLY n 1 70 THR n 1 71 SER n 1 72 ALA n 1 73 SER n 1 74 LEU n 1 75 ALA n 1 76 ILE n 1 77 SER n 1 78 GLY n 1 79 LEU n 1 80 ARG n 1 81 SER n 1 82 GLU n 1 83 ASP n 1 84 GLU n 1 85 ALA n 1 86 ASP n 1 87 TYR n 1 88 TYR n 1 89 CYS n 1 90 ALA n 1 91 ALA n 1 92 TRP n 1 93 ASP n 1 94 ASP n 1 95 SER n 1 96 LEU n 1 97 SER n 1 98 GLY n 1 99 LEU n 1 100 TYR n 1 101 VAL n 1 102 PHE n 1 103 GLY n 1 104 THR n 1 105 ALA n 1 106 THR n 1 107 LYS n 1 108 VAL n 1 109 THR n 1 110 VAL n 1 111 LEU n 1 112 SER n 1 113 GLN n 1 114 PRO n 1 115 LYS n 1 116 ALA n 1 117 ASN n 1 118 PRO n 1 119 THR n 1 120 VAL n 1 121 THR n 1 122 LEU n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 SER n 1 127 SER n 1 128 GLU n 1 129 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 129 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? C . n A 1 2 SER 2 2 ? ? ? C . n A 1 3 VAL 3 3 ? ? ? C . n A 1 4 LEU 4 4 ? ? ? C . n A 1 5 THR 5 5 ? ? ? C . n A 1 6 GLN 6 6 ? ? ? C . n A 1 7 PRO 7 7 ? ? ? C . n A 1 8 PRO 8 8 ? ? ? C . n A 1 9 SER 9 9 ? ? ? C . n A 1 10 ALA 10 10 ? ? ? C . n A 1 11 SER 11 11 ? ? ? C . n A 1 12 GLY 12 12 ? ? ? C . n A 1 13 THR 13 13 ? ? ? C . n A 1 14 PRO 14 14 ? ? ? C . n A 1 15 GLY 15 15 ? ? ? C . n A 1 16 GLN 16 16 ? ? ? C . n A 1 17 ARG 17 17 17 ARG ARG C . n A 1 18 VAL 18 18 18 VAL VAL C . n A 1 19 THR 19 19 19 THR THR C . n A 1 20 ILE 20 20 20 ILE ILE C . n A 1 21 SER 21 21 21 SER SER C . n A 1 22 CYS 22 22 22 CYS CYS C . n A 1 23 SER 23 23 23 SER SER C . n A 1 24 GLY 24 24 24 GLY GLY C . n A 1 25 SER 25 25 25 SER SER C . n A 1 26 SER 26 26 26 SER SER C . n A 1 27 SER 27 27 27 SER SER C . n A 1 28 ASN 28 28 28 ASN ASN C . n A 1 29 ILE 29 29 29 ILE ILE C . n A 1 30 GLY 30 30 30 GLY GLY C . n A 1 31 SER 31 31 31 SER SER C . n A 1 32 ASN 32 32 32 ASN ASN C . n A 1 33 ASN 33 33 33 ASN ASN C . n A 1 34 VAL 34 34 34 VAL VAL C . n A 1 35 TYR 35 35 35 TYR TYR C . n A 1 36 TRP 36 36 36 TRP TRP C . n A 1 37 TYR 37 37 37 TYR TYR C . n A 1 38 GLN 38 38 38 GLN GLN C . n A 1 39 GLN 39 39 39 GLN GLN C . n A 1 40 LEU 40 40 40 LEU LEU C . n A 1 41 PRO 41 41 41 PRO PRO C . n A 1 42 GLY 42 42 42 GLY GLY C . n A 1 43 MET 43 43 43 MET MET C . n A 1 44 ALA 44 44 44 ALA ALA C . n A 1 45 PRO 45 45 45 PRO PRO C . n A 1 46 LYS 46 46 46 LYS LYS C . n A 1 47 LEU 47 47 47 LEU LEU C . n A 1 48 LEU 48 48 48 LEU LEU C . n A 1 49 ILE 49 49 49 ILE ILE C . n A 1 50 TYR 50 50 50 TYR TYR C . n A 1 51 ASN 51 51 51 ASN ASN C . n A 1 52 ASN 52 52 52 ASN ASN C . n A 1 53 PHE 53 53 53 PHE PHE C . n A 1 54 GLN 54 54 54 GLN GLN C . n A 1 55 ARG 55 55 55 ARG ARG C . n A 1 56 PRO 56 56 56 PRO PRO C . n A 1 57 SER 57 57 57 SER SER C . n A 1 58 GLY 58 58 58 GLY GLY C . n A 1 59 VAL 59 59 59 VAL VAL C . n A 1 60 SER 60 60 60 SER SER C . n A 1 61 ASP 61 61 61 ASP ASP C . n A 1 62 ARG 62 62 62 ARG ARG C . n A 1 63 PHE 63 63 63 PHE PHE C . n A 1 64 SER 64 64 64 SER SER C . n A 1 65 GLY 65 65 65 GLY GLY C . n A 1 66 SER 66 66 66 SER SER C . n A 1 67 LYS 67 67 67 LYS LYS C . n A 1 68 SER 68 68 68 SER SER C . n A 1 69 GLY 69 69 69 GLY GLY C . n A 1 70 THR 70 70 70 THR THR C . n A 1 71 SER 71 71 71 SER SER C . n A 1 72 ALA 72 72 72 ALA ALA C . n A 1 73 SER 73 73 73 SER SER C . n A 1 74 LEU 74 74 74 LEU LEU C . n A 1 75 ALA 75 75 75 ALA ALA C . n A 1 76 ILE 76 76 76 ILE ILE C . n A 1 77 SER 77 77 77 SER SER C . n A 1 78 GLY 78 78 78 GLY GLY C . n A 1 79 LEU 79 79 79 LEU LEU C . n A 1 80 ARG 80 80 80 ARG ARG C . n A 1 81 SER 81 81 81 SER SER C . n A 1 82 GLU 82 82 82 GLU GLU C . n A 1 83 ASP 83 83 83 ASP ASP C . n A 1 84 GLU 84 84 84 GLU GLU C . n A 1 85 ALA 85 85 85 ALA ALA C . n A 1 86 ASP 86 86 86 ASP ASP C . n A 1 87 TYR 87 87 87 TYR TYR C . n A 1 88 TYR 88 88 88 TYR TYR C . n A 1 89 CYS 89 89 89 CYS CYS C . n A 1 90 ALA 90 90 90 ALA ALA C . n A 1 91 ALA 91 91 91 ALA ALA C . n A 1 92 TRP 92 92 92 TRP TRP C . n A 1 93 ASP 93 93 93 ASP ASP C . n A 1 94 ASP 94 94 94 ASP ASP C . n A 1 95 SER 95 95 95 SER SER C . n A 1 96 LEU 96 96 96 LEU LEU C . n A 1 97 SER 97 97 97 SER SER C . n A 1 98 GLY 98 98 98 GLY GLY C . n A 1 99 LEU 99 99 99 LEU LEU C . n A 1 100 TYR 100 100 100 TYR TYR C . n A 1 101 VAL 101 101 101 VAL VAL C . n A 1 102 PHE 102 102 102 PHE PHE C . n A 1 103 GLY 103 103 103 GLY GLY C . n A 1 104 THR 104 104 104 THR THR C . n A 1 105 ALA 105 105 105 ALA ALA C . n A 1 106 THR 106 106 106 THR THR C . n A 1 107 LYS 107 107 107 LYS LYS C . n A 1 108 VAL 108 108 108 VAL VAL C . n A 1 109 THR 109 109 109 THR THR C . n A 1 110 VAL 110 110 110 VAL VAL C . n A 1 111 LEU 111 111 ? ? ? C . n A 1 112 SER 112 112 ? ? ? C . n A 1 113 GLN 113 113 ? ? ? C . n A 1 114 PRO 114 114 ? ? ? C . n A 1 115 LYS 115 115 ? ? ? C . n A 1 116 ALA 116 116 ? ? ? C . n A 1 117 ASN 117 117 ? ? ? C . n A 1 118 PRO 118 118 ? ? ? C . n A 1 119 THR 119 119 ? ? ? C . n A 1 120 VAL 120 120 ? ? ? C . n A 1 121 THR 121 121 ? ? ? C . n A 1 122 LEU 122 122 ? ? ? C . n A 1 123 PHE 123 123 ? ? ? C . n A 1 124 PRO 124 124 ? ? ? C . n A 1 125 PRO 125 125 ? ? ? C . n A 1 126 SER 126 126 ? ? ? C . n A 1 127 SER 127 127 ? ? ? C . n A 1 128 GLU 128 128 ? ? ? C . n A 1 129 GLU 129 129 ? ? ? C . n B 1 1 GLN 1 1 ? ? ? A . n B 1 2 SER 2 2 ? ? ? A . n B 1 3 VAL 3 3 ? ? ? A . n B 1 4 LEU 4 4 ? ? ? A . n B 1 5 THR 5 5 ? ? ? A . n B 1 6 GLN 6 6 ? ? ? A . n B 1 7 PRO 7 7 ? ? ? A . n B 1 8 PRO 8 8 ? ? ? A . n B 1 9 SER 9 9 ? ? ? A . n B 1 10 ALA 10 10 ? ? ? A . n B 1 11 SER 11 11 ? ? ? A . n B 1 12 GLY 12 12 ? ? ? A . n B 1 13 THR 13 13 ? ? ? A . n B 1 14 PRO 14 14 ? ? ? A . n B 1 15 GLY 15 15 ? ? ? A . n B 1 16 GLN 16 16 ? ? ? A . n B 1 17 ARG 17 17 17 ARG ARG A . n B 1 18 VAL 18 18 18 VAL VAL A . n B 1 19 THR 19 19 19 THR THR A . n B 1 20 ILE 20 20 20 ILE ILE A . n B 1 21 SER 21 21 21 SER SER A . n B 1 22 CYS 22 22 22 CYS CYS A . n B 1 23 SER 23 23 23 SER SER A . n B 1 24 GLY 24 24 24 GLY GLY A . n B 1 25 SER 25 25 25 SER SER A . n B 1 26 SER 26 26 26 SER SER A . n B 1 27 SER 27 27 27 SER SER A . n B 1 28 ASN 28 28 28 ASN ASN A . n B 1 29 ILE 29 29 29 ILE ILE A . n B 1 30 GLY 30 30 30 GLY GLY A . n B 1 31 SER 31 31 31 SER SER A . n B 1 32 ASN 32 32 32 ASN ASN A . n B 1 33 ASN 33 33 33 ASN ASN A . n B 1 34 VAL 34 34 34 VAL VAL A . n B 1 35 TYR 35 35 35 TYR TYR A . n B 1 36 TRP 36 36 36 TRP TRP A . n B 1 37 TYR 37 37 37 TYR TYR A . n B 1 38 GLN 38 38 38 GLN GLN A . n B 1 39 GLN 39 39 39 GLN GLN A . n B 1 40 LEU 40 40 40 LEU LEU A . n B 1 41 PRO 41 41 41 PRO PRO A . n B 1 42 GLY 42 42 42 GLY GLY A . n B 1 43 MET 43 43 43 MET MET A . n B 1 44 ALA 44 44 44 ALA ALA A . n B 1 45 PRO 45 45 45 PRO PRO A . n B 1 46 LYS 46 46 46 LYS LYS A . n B 1 47 LEU 47 47 47 LEU LEU A . n B 1 48 LEU 48 48 48 LEU LEU A . n B 1 49 ILE 49 49 49 ILE ILE A . n B 1 50 TYR 50 50 50 TYR TYR A . n B 1 51 ASN 51 51 51 ASN ASN A . n B 1 52 ASN 52 52 52 ASN ASN A . n B 1 53 PHE 53 53 53 PHE PHE A . n B 1 54 GLN 54 54 54 GLN GLN A . n B 1 55 ARG 55 55 55 ARG ARG A . n B 1 56 PRO 56 56 56 PRO PRO A . n B 1 57 SER 57 57 57 SER SER A . n B 1 58 GLY 58 58 58 GLY GLY A . n B 1 59 VAL 59 59 59 VAL VAL A . n B 1 60 SER 60 60 60 SER SER A . n B 1 61 ASP 61 61 61 ASP ASP A . n B 1 62 ARG 62 62 62 ARG ARG A . n B 1 63 PHE 63 63 63 PHE PHE A . n B 1 64 SER 64 64 64 SER SER A . n B 1 65 GLY 65 65 65 GLY GLY A . n B 1 66 SER 66 66 66 SER SER A . n B 1 67 LYS 67 67 67 LYS LYS A . n B 1 68 SER 68 68 68 SER SER A . n B 1 69 GLY 69 69 69 GLY GLY A . n B 1 70 THR 70 70 70 THR THR A . n B 1 71 SER 71 71 71 SER SER A . n B 1 72 ALA 72 72 72 ALA ALA A . n B 1 73 SER 73 73 73 SER SER A . n B 1 74 LEU 74 74 74 LEU LEU A . n B 1 75 ALA 75 75 75 ALA ALA A . n B 1 76 ILE 76 76 76 ILE ILE A . n B 1 77 SER 77 77 77 SER SER A . n B 1 78 GLY 78 78 78 GLY GLY A . n B 1 79 LEU 79 79 79 LEU LEU A . n B 1 80 ARG 80 80 80 ARG ARG A . n B 1 81 SER 81 81 81 SER SER A . n B 1 82 GLU 82 82 82 GLU GLU A . n B 1 83 ASP 83 83 83 ASP ASP A . n B 1 84 GLU 84 84 84 GLU GLU A . n B 1 85 ALA 85 85 85 ALA ALA A . n B 1 86 ASP 86 86 86 ASP ASP A . n B 1 87 TYR 87 87 87 TYR TYR A . n B 1 88 TYR 88 88 88 TYR TYR A . n B 1 89 CYS 89 89 89 CYS CYS A . n B 1 90 ALA 90 90 90 ALA ALA A . n B 1 91 ALA 91 91 91 ALA ALA A . n B 1 92 TRP 92 92 92 TRP TRP A . n B 1 93 ASP 93 93 93 ASP ASP A . n B 1 94 ASP 94 94 94 ASP ASP A . n B 1 95 SER 95 95 95 SER SER A . n B 1 96 LEU 96 96 96 LEU LEU A . n B 1 97 SER 97 97 97 SER SER A . n B 1 98 GLY 98 98 98 GLY GLY A . n B 1 99 LEU 99 99 99 LEU LEU A . n B 1 100 TYR 100 100 100 TYR TYR A . n B 1 101 VAL 101 101 101 VAL VAL A . n B 1 102 PHE 102 102 102 PHE PHE A . n B 1 103 GLY 103 103 103 GLY GLY A . n B 1 104 THR 104 104 104 THR THR A . n B 1 105 ALA 105 105 105 ALA ALA A . n B 1 106 THR 106 106 106 THR THR A . n B 1 107 LYS 107 107 107 LYS LYS A . n B 1 108 VAL 108 108 108 VAL VAL A . n B 1 109 THR 109 109 109 THR THR A . n B 1 110 VAL 110 110 110 VAL VAL A . n B 1 111 LEU 111 111 ? ? ? A . n B 1 112 SER 112 112 ? ? ? A . n B 1 113 GLN 113 113 ? ? ? A . n B 1 114 PRO 114 114 ? ? ? A . n B 1 115 LYS 115 115 ? ? ? A . n B 1 116 ALA 116 116 ? ? ? A . n B 1 117 ASN 117 117 ? ? ? A . n B 1 118 PRO 118 118 ? ? ? A . n B 1 119 THR 119 119 ? ? ? A . n B 1 120 VAL 120 120 ? ? ? A . n B 1 121 THR 121 121 ? ? ? A . n B 1 122 LEU 122 122 ? ? ? A . n B 1 123 PHE 123 123 ? ? ? A . n B 1 124 PRO 124 124 ? ? ? A . n B 1 125 PRO 125 125 ? ? ? A . n B 1 126 SER 126 126 ? ? ? A . n B 1 127 SER 127 127 ? ? ? A . n B 1 128 GLU 128 128 ? ? ? A . n B 1 129 GLU 129 129 ? ? ? A . n C 1 1 GLN 1 1 ? ? ? B . n C 1 2 SER 2 2 ? ? ? B . n C 1 3 VAL 3 3 ? ? ? B . n C 1 4 LEU 4 4 ? ? ? B . n C 1 5 THR 5 5 ? ? ? B . n C 1 6 GLN 6 6 ? ? ? B . n C 1 7 PRO 7 7 ? ? ? B . n C 1 8 PRO 8 8 ? ? ? B . n C 1 9 SER 9 9 ? ? ? B . n C 1 10 ALA 10 10 ? ? ? B . n C 1 11 SER 11 11 ? ? ? B . n C 1 12 GLY 12 12 ? ? ? B . n C 1 13 THR 13 13 ? ? ? B . n C 1 14 PRO 14 14 ? ? ? B . n C 1 15 GLY 15 15 ? ? ? B . n C 1 16 GLN 16 16 ? ? ? B . n C 1 17 ARG 17 17 17 ARG ARG B . n C 1 18 VAL 18 18 18 VAL VAL B . n C 1 19 THR 19 19 19 THR THR B . n C 1 20 ILE 20 20 20 ILE ILE B . n C 1 21 SER 21 21 21 SER SER B . n C 1 22 CYS 22 22 22 CYS CYS B . n C 1 23 SER 23 23 23 SER SER B . n C 1 24 GLY 24 24 24 GLY GLY B . n C 1 25 SER 25 25 25 SER SER B . n C 1 26 SER 26 26 26 SER SER B . n C 1 27 SER 27 27 27 SER SER B . n C 1 28 ASN 28 28 28 ASN ASN B . n C 1 29 ILE 29 29 29 ILE ILE B . n C 1 30 GLY 30 30 30 GLY GLY B . n C 1 31 SER 31 31 31 SER SER B . n C 1 32 ASN 32 32 32 ASN ASN B . n C 1 33 ASN 33 33 33 ASN ASN B . n C 1 34 VAL 34 34 34 VAL VAL B . n C 1 35 TYR 35 35 35 TYR TYR B . n C 1 36 TRP 36 36 36 TRP TRP B . n C 1 37 TYR 37 37 37 TYR TYR B . n C 1 38 GLN 38 38 38 GLN GLN B . n C 1 39 GLN 39 39 39 GLN GLN B . n C 1 40 LEU 40 40 40 LEU LEU B . n C 1 41 PRO 41 41 41 PRO PRO B . n C 1 42 GLY 42 42 42 GLY GLY B . n C 1 43 MET 43 43 43 MET MET B . n C 1 44 ALA 44 44 44 ALA ALA B . n C 1 45 PRO 45 45 45 PRO PRO B . n C 1 46 LYS 46 46 46 LYS LYS B . n C 1 47 LEU 47 47 47 LEU LEU B . n C 1 48 LEU 48 48 48 LEU LEU B . n C 1 49 ILE 49 49 49 ILE ILE B . n C 1 50 TYR 50 50 50 TYR TYR B . n C 1 51 ASN 51 51 51 ASN ASN B . n C 1 52 ASN 52 52 52 ASN ASN B . n C 1 53 PHE 53 53 53 PHE PHE B . n C 1 54 GLN 54 54 54 GLN GLN B . n C 1 55 ARG 55 55 55 ARG ARG B . n C 1 56 PRO 56 56 56 PRO PRO B . n C 1 57 SER 57 57 57 SER SER B . n C 1 58 GLY 58 58 58 GLY GLY B . n C 1 59 VAL 59 59 59 VAL VAL B . n C 1 60 SER 60 60 60 SER SER B . n C 1 61 ASP 61 61 61 ASP ASP B . n C 1 62 ARG 62 62 62 ARG ARG B . n C 1 63 PHE 63 63 63 PHE PHE B . n C 1 64 SER 64 64 64 SER SER B . n C 1 65 GLY 65 65 65 GLY GLY B . n C 1 66 SER 66 66 66 SER SER B . n C 1 67 LYS 67 67 67 LYS LYS B . n C 1 68 SER 68 68 68 SER SER B . n C 1 69 GLY 69 69 69 GLY GLY B . n C 1 70 THR 70 70 70 THR THR B . n C 1 71 SER 71 71 71 SER SER B . n C 1 72 ALA 72 72 72 ALA ALA B . n C 1 73 SER 73 73 73 SER SER B . n C 1 74 LEU 74 74 74 LEU LEU B . n C 1 75 ALA 75 75 75 ALA ALA B . n C 1 76 ILE 76 76 76 ILE ILE B . n C 1 77 SER 77 77 77 SER SER B . n C 1 78 GLY 78 78 78 GLY GLY B . n C 1 79 LEU 79 79 79 LEU LEU B . n C 1 80 ARG 80 80 80 ARG ARG B . n C 1 81 SER 81 81 81 SER SER B . n C 1 82 GLU 82 82 82 GLU GLU B . n C 1 83 ASP 83 83 83 ASP ASP B . n C 1 84 GLU 84 84 84 GLU GLU B . n C 1 85 ALA 85 85 85 ALA ALA B . n C 1 86 ASP 86 86 86 ASP ASP B . n C 1 87 TYR 87 87 87 TYR TYR B . n C 1 88 TYR 88 88 88 TYR TYR B . n C 1 89 CYS 89 89 89 CYS CYS B . n C 1 90 ALA 90 90 90 ALA ALA B . n C 1 91 ALA 91 91 91 ALA ALA B . n C 1 92 TRP 92 92 92 TRP TRP B . n C 1 93 ASP 93 93 93 ASP ASP B . n C 1 94 ASP 94 94 94 ASP ASP B . n C 1 95 SER 95 95 95 SER SER B . n C 1 96 LEU 96 96 96 LEU LEU B . n C 1 97 SER 97 97 97 SER SER B . n C 1 98 GLY 98 98 98 GLY GLY B . n C 1 99 LEU 99 99 99 LEU LEU B . n C 1 100 TYR 100 100 100 TYR TYR B . n C 1 101 VAL 101 101 101 VAL VAL B . n C 1 102 PHE 102 102 102 PHE PHE B . n C 1 103 GLY 103 103 103 GLY GLY B . n C 1 104 THR 104 104 104 THR THR B . n C 1 105 ALA 105 105 105 ALA ALA B . n C 1 106 THR 106 106 106 THR THR B . n C 1 107 LYS 107 107 107 LYS LYS B . n C 1 108 VAL 108 108 108 VAL VAL B . n C 1 109 THR 109 109 109 THR THR B . n C 1 110 VAL 110 110 110 VAL VAL B . n C 1 111 LEU 111 111 ? ? ? B . n C 1 112 SER 112 112 ? ? ? B . n C 1 113 GLN 113 113 ? ? ? B . n C 1 114 PRO 114 114 ? ? ? B . n C 1 115 LYS 115 115 ? ? ? B . n C 1 116 ALA 116 116 ? ? ? B . n C 1 117 ASN 117 117 ? ? ? B . n C 1 118 PRO 118 118 ? ? ? B . n C 1 119 THR 119 119 ? ? ? B . n C 1 120 VAL 120 120 ? ? ? B . n C 1 121 THR 121 121 ? ? ? B . n C 1 122 LEU 122 122 ? ? ? B . n C 1 123 PHE 123 123 ? ? ? B . n C 1 124 PRO 124 124 ? ? ? B . n C 1 125 PRO 125 125 ? ? ? B . n C 1 126 SER 126 126 ? ? ? B . n C 1 127 SER 127 127 ? ? ? B . n C 1 128 GLU 128 128 ? ? ? B . n C 1 129 GLU 129 129 ? ? ? B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9LJ0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9LJ0 _struct.title 'The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 3).' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9LJ0 _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9LJ0 _struct_ref.pdbx_db_accession 9LJ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9LJ0 C 1 ? 129 ? 9LJ0 1 ? 129 ? 1 129 2 1 9LJ0 A 1 ? 129 ? 9LJ0 1 ? 129 ? 1 129 3 1 9LJ0 B 1 ? 129 ? 9LJ0 1 ? 129 ? 1 129 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 89 SG ? ? C CYS 22 C CYS 89 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 89 SG ? ? A CYS 22 A CYS 89 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 89 SG ? ? B CYS 22 B CYS 89 1_555 ? ? ? ? ? ? ? 2.025 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 22 ? CYS A 89 ? CYS C 22 ? 1_555 CYS C 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 22 ? CYS B 89 ? CYS A 22 ? 1_555 CYS A 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 22 ? CYS C 89 ? CYS B 22 ? 1_555 CYS B 89 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 18 ? CYS A 22 ? VAL C 18 CYS C 22 AA1 2 VAL B 18 ? CYS B 22 ? VAL A 18 CYS A 22 AA1 3 VAL C 18 ? CYS C 22 ? VAL B 18 CYS B 22 AA2 1 ASN A 32 ? GLN A 39 ? ASN C 32 GLN C 39 AA2 2 ASN B 32 ? GLN B 39 ? ASN A 32 GLN A 39 AA2 3 ASN C 32 ? GLN C 39 ? ASN B 32 GLN B 39 AA3 1 GLY A 42 ? MET A 43 ? GLY C 42 MET C 43 AA3 2 GLY B 42 ? MET B 43 ? GLY A 42 MET A 43 AA3 3 GLY C 42 ? MET C 43 ? GLY B 42 MET B 43 AA4 1 ILE A 49 ? GLN A 54 ? ILE C 49 GLN C 54 AA4 2 ILE B 49 ? GLN B 54 ? ILE A 49 GLN A 54 AA4 3 ILE C 49 ? GLN C 54 ? ILE B 49 GLN B 54 AA5 1 SER A 57 ? ASP A 61 ? SER C 57 ASP C 61 AA5 2 SER B 57 ? ASP B 61 ? SER A 57 ASP A 61 AA5 3 SER C 57 ? ASP C 61 ? SER B 57 ASP B 61 AA6 1 SER A 68 ? LEU A 74 ? SER C 68 LEU C 74 AA6 2 SER B 68 ? LEU B 74 ? SER A 68 LEU A 74 AA6 3 SER C 68 ? LEU C 74 ? SER B 68 LEU B 74 AA7 1 GLU A 84 ? ASP A 86 ? GLU C 84 ASP C 86 AA7 2 GLU B 84 ? ASP B 86 ? GLU A 84 ASP A 86 AA7 3 GLU C 84 ? ASP C 86 ? GLU B 84 ASP B 86 AA8 1 ALA A 91 ? ASP A 93 ? ALA C 91 ASP C 93 AA8 2 ALA B 91 ? ASP B 93 ? ALA A 91 ASP A 93 AA8 3 ALA C 91 ? ASP C 93 ? ALA B 91 ASP B 93 AA9 1 TYR A 100 ? PHE A 102 ? TYR C 100 PHE C 102 AA9 2 TYR B 100 ? PHE B 102 ? TYR A 100 PHE A 102 AA9 3 TYR C 100 ? PHE C 102 ? TYR B 100 PHE B 102 AB1 1 ALA A 105 ? THR A 109 ? ALA C 105 THR C 109 AB1 2 ALA B 105 ? THR B 109 ? ALA A 105 THR A 109 AB1 3 ALA C 105 ? THR C 109 ? ALA B 105 THR B 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 19 ? N THR C 19 O ILE B 20 ? O ILE A 20 AA1 2 3 N THR B 19 ? N THR A 19 O ILE C 20 ? O ILE B 20 AA2 1 2 N ASN A 33 ? N ASN C 33 O ASN B 32 ? O ASN A 32 AA2 2 3 N ASN B 33 ? N ASN A 33 O ASN C 32 ? O ASN B 32 AA3 1 2 N MET A 43 ? N MET C 43 O GLY B 42 ? O GLY A 42 AA3 2 3 N MET B 43 ? N MET A 43 O GLY C 42 ? O GLY B 42 AA4 1 2 N ASN A 52 ? N ASN C 52 O ASN B 51 ? O ASN A 51 AA4 2 3 N ASN B 52 ? N ASN A 52 O ASN C 51 ? O ASN B 51 AA5 1 2 N VAL A 59 ? N VAL C 59 O SER B 60 ? O SER A 60 AA5 2 3 N VAL B 59 ? N VAL A 59 O SER C 60 ? O SER B 60 AA6 1 2 N GLY A 69 ? N GLY C 69 O THR B 70 ? O THR A 70 AA6 2 3 N GLY B 69 ? N GLY A 69 O THR C 70 ? O THR B 70 AA7 1 2 N ALA A 85 ? N ALA C 85 O GLU B 84 ? O GLU A 84 AA7 2 3 N ALA B 85 ? N ALA A 85 O GLU C 84 ? O GLU B 84 AA8 1 2 N TRP A 92 ? N TRP C 92 O ALA B 91 ? O ALA A 91 AA8 2 3 N TRP B 92 ? N TRP A 92 O ALA C 91 ? O ALA B 91 AA9 1 2 N PHE A 102 ? N PHE C 102 O VAL B 101 ? O VAL A 101 AA9 2 3 N PHE B 102 ? N PHE A 102 O VAL C 101 ? O VAL B 101 AB1 1 2 N LYS A 107 ? N LYS C 107 O VAL B 108 ? O VAL A 108 AB1 2 3 N LYS B 107 ? N LYS A 107 O VAL C 108 ? O VAL B 108 # _pdbx_entry_details.entry_id 9LJ0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG C 62 ? ? 58.32 70.47 2 1 PHE C 63 ? ? 70.37 42.86 3 1 ASP C 83 ? ? -160.72 96.36 4 1 ARG A 62 ? ? 58.31 70.46 5 1 PHE A 63 ? ? 70.34 42.89 6 1 ASP A 83 ? ? -160.74 96.40 7 1 ARG B 62 ? ? 58.33 70.48 8 1 PHE B 63 ? ? 70.34 42.88 9 1 ASP B 83 ? ? -160.72 96.37 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9LJ0 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9LJ0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 10827 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'amyloid light chain' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9LJ0 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9LJ0 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9LJ0 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLN 1 ? A GLN 1 2 1 Y 1 C SER 2 ? A SER 2 3 1 Y 1 C VAL 3 ? A VAL 3 4 1 Y 1 C LEU 4 ? A LEU 4 5 1 Y 1 C THR 5 ? A THR 5 6 1 Y 1 C GLN 6 ? A GLN 6 7 1 Y 1 C PRO 7 ? A PRO 7 8 1 Y 1 C PRO 8 ? A PRO 8 9 1 Y 1 C SER 9 ? A SER 9 10 1 Y 1 C ALA 10 ? A ALA 10 11 1 Y 1 C SER 11 ? A SER 11 12 1 Y 1 C GLY 12 ? A GLY 12 13 1 Y 1 C THR 13 ? A THR 13 14 1 Y 1 C PRO 14 ? A PRO 14 15 1 Y 1 C GLY 15 ? A GLY 15 16 1 Y 1 C GLN 16 ? A GLN 16 17 1 Y 1 C LEU 111 ? A LEU 111 18 1 Y 1 C SER 112 ? A SER 112 19 1 Y 1 C GLN 113 ? A GLN 113 20 1 Y 1 C PRO 114 ? A PRO 114 21 1 Y 1 C LYS 115 ? A LYS 115 22 1 Y 1 C ALA 116 ? A ALA 116 23 1 Y 1 C ASN 117 ? A ASN 117 24 1 Y 1 C PRO 118 ? A PRO 118 25 1 Y 1 C THR 119 ? A THR 119 26 1 Y 1 C VAL 120 ? A VAL 120 27 1 Y 1 C THR 121 ? A THR 121 28 1 Y 1 C LEU 122 ? A LEU 122 29 1 Y 1 C PHE 123 ? A PHE 123 30 1 Y 1 C PRO 124 ? A PRO 124 31 1 Y 1 C PRO 125 ? A PRO 125 32 1 Y 1 C SER 126 ? A SER 126 33 1 Y 1 C SER 127 ? A SER 127 34 1 Y 1 C GLU 128 ? A GLU 128 35 1 Y 1 C GLU 129 ? A GLU 129 36 1 Y 1 A GLN 1 ? B GLN 1 37 1 Y 1 A SER 2 ? B SER 2 38 1 Y 1 A VAL 3 ? B VAL 3 39 1 Y 1 A LEU 4 ? B LEU 4 40 1 Y 1 A THR 5 ? B THR 5 41 1 Y 1 A GLN 6 ? B GLN 6 42 1 Y 1 A PRO 7 ? B PRO 7 43 1 Y 1 A PRO 8 ? B PRO 8 44 1 Y 1 A SER 9 ? B SER 9 45 1 Y 1 A ALA 10 ? B ALA 10 46 1 Y 1 A SER 11 ? B SER 11 47 1 Y 1 A GLY 12 ? B GLY 12 48 1 Y 1 A THR 13 ? B THR 13 49 1 Y 1 A PRO 14 ? B PRO 14 50 1 Y 1 A GLY 15 ? B GLY 15 51 1 Y 1 A GLN 16 ? B GLN 16 52 1 Y 1 A LEU 111 ? B LEU 111 53 1 Y 1 A SER 112 ? B SER 112 54 1 Y 1 A GLN 113 ? B GLN 113 55 1 Y 1 A PRO 114 ? B PRO 114 56 1 Y 1 A LYS 115 ? B LYS 115 57 1 Y 1 A ALA 116 ? B ALA 116 58 1 Y 1 A ASN 117 ? B ASN 117 59 1 Y 1 A PRO 118 ? B PRO 118 60 1 Y 1 A THR 119 ? B THR 119 61 1 Y 1 A VAL 120 ? B VAL 120 62 1 Y 1 A THR 121 ? B THR 121 63 1 Y 1 A LEU 122 ? B LEU 122 64 1 Y 1 A PHE 123 ? B PHE 123 65 1 Y 1 A PRO 124 ? B PRO 124 66 1 Y 1 A PRO 125 ? B PRO 125 67 1 Y 1 A SER 126 ? B SER 126 68 1 Y 1 A SER 127 ? B SER 127 69 1 Y 1 A GLU 128 ? B GLU 128 70 1 Y 1 A GLU 129 ? B GLU 129 71 1 Y 1 B GLN 1 ? C GLN 1 72 1 Y 1 B SER 2 ? C SER 2 73 1 Y 1 B VAL 3 ? C VAL 3 74 1 Y 1 B LEU 4 ? C LEU 4 75 1 Y 1 B THR 5 ? C THR 5 76 1 Y 1 B GLN 6 ? C GLN 6 77 1 Y 1 B PRO 7 ? C PRO 7 78 1 Y 1 B PRO 8 ? C PRO 8 79 1 Y 1 B SER 9 ? C SER 9 80 1 Y 1 B ALA 10 ? C ALA 10 81 1 Y 1 B SER 11 ? C SER 11 82 1 Y 1 B GLY 12 ? C GLY 12 83 1 Y 1 B THR 13 ? C THR 13 84 1 Y 1 B PRO 14 ? C PRO 14 85 1 Y 1 B GLY 15 ? C GLY 15 86 1 Y 1 B GLN 16 ? C GLN 16 87 1 Y 1 B LEU 111 ? C LEU 111 88 1 Y 1 B SER 112 ? C SER 112 89 1 Y 1 B GLN 113 ? C GLN 113 90 1 Y 1 B PRO 114 ? C PRO 114 91 1 Y 1 B LYS 115 ? C LYS 115 92 1 Y 1 B ALA 116 ? C ALA 116 93 1 Y 1 B ASN 117 ? C ASN 117 94 1 Y 1 B PRO 118 ? C PRO 118 95 1 Y 1 B THR 119 ? C THR 119 96 1 Y 1 B VAL 120 ? C VAL 120 97 1 Y 1 B THR 121 ? C THR 121 98 1 Y 1 B LEU 122 ? C LEU 122 99 1 Y 1 B PHE 123 ? C PHE 123 100 1 Y 1 B PRO 124 ? C PRO 124 101 1 Y 1 B PRO 125 ? C PRO 125 102 1 Y 1 B SER 126 ? C SER 126 103 1 Y 1 B SER 127 ? C SER 127 104 1 Y 1 B GLU 128 ? C GLU 128 105 1 Y 1 B GLU 129 ? C GLU 129 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 MET N N N N 206 MET CA C N S 207 MET C C N N 208 MET O O N N 209 MET CB C N N 210 MET CG C N N 211 MET SD S N N 212 MET CE C N N 213 MET OXT O N N 214 MET H H N N 215 MET H2 H N N 216 MET HA H N N 217 MET HB2 H N N 218 MET HB3 H N N 219 MET HG2 H N N 220 MET HG3 H N N 221 MET HE1 H N N 222 MET HE2 H N N 223 MET HE3 H N N 224 MET HXT H N N 225 PHE N N N N 226 PHE CA C N S 227 PHE C C N N 228 PHE O O N N 229 PHE CB C N N 230 PHE CG C Y N 231 PHE CD1 C Y N 232 PHE CD2 C Y N 233 PHE CE1 C Y N 234 PHE CE2 C Y N 235 PHE CZ C Y N 236 PHE OXT O N N 237 PHE H H N N 238 PHE H2 H N N 239 PHE HA H N N 240 PHE HB2 H N N 241 PHE HB3 H N N 242 PHE HD1 H N N 243 PHE HD2 H N N 244 PHE HE1 H N N 245 PHE HE2 H N N 246 PHE HZ H N N 247 PHE HXT H N N 248 PRO N N N N 249 PRO CA C N S 250 PRO C C N N 251 PRO O O N N 252 PRO CB C N N 253 PRO CG C N N 254 PRO CD C N N 255 PRO OXT O N N 256 PRO H H N N 257 PRO HA H N N 258 PRO HB2 H N N 259 PRO HB3 H N N 260 PRO HG2 H N N 261 PRO HG3 H N N 262 PRO HD2 H N N 263 PRO HD3 H N N 264 PRO HXT H N N 265 SER N N N N 266 SER CA C N S 267 SER C C N N 268 SER O O N N 269 SER CB C N N 270 SER OG O N N 271 SER OXT O N N 272 SER H H N N 273 SER H2 H N N 274 SER HA H N N 275 SER HB2 H N N 276 SER HB3 H N N 277 SER HG H N N 278 SER HXT H N N 279 THR N N N N 280 THR CA C N S 281 THR C C N N 282 THR O O N N 283 THR CB C N R 284 THR OG1 O N N 285 THR CG2 C N N 286 THR OXT O N N 287 THR H H N N 288 THR H2 H N N 289 THR HA H N N 290 THR HB H N N 291 THR HG1 H N N 292 THR HG21 H N N 293 THR HG22 H N N 294 THR HG23 H N N 295 THR HXT H N N 296 TRP N N N N 297 TRP CA C N S 298 TRP C C N N 299 TRP O O N N 300 TRP CB C N N 301 TRP CG C Y N 302 TRP CD1 C Y N 303 TRP CD2 C Y N 304 TRP NE1 N Y N 305 TRP CE2 C Y N 306 TRP CE3 C Y N 307 TRP CZ2 C Y N 308 TRP CZ3 C Y N 309 TRP CH2 C Y N 310 TRP OXT O N N 311 TRP H H N N 312 TRP H2 H N N 313 TRP HA H N N 314 TRP HB2 H N N 315 TRP HB3 H N N 316 TRP HD1 H N N 317 TRP HE1 H N N 318 TRP HE3 H N N 319 TRP HZ2 H N N 320 TRP HZ3 H N N 321 TRP HH2 H N N 322 TRP HXT H N N 323 TYR N N N N 324 TYR CA C N S 325 TYR C C N N 326 TYR O O N N 327 TYR CB C N N 328 TYR CG C Y N 329 TYR CD1 C Y N 330 TYR CD2 C Y N 331 TYR CE1 C Y N 332 TYR CE2 C Y N 333 TYR CZ C Y N 334 TYR OH O N N 335 TYR OXT O N N 336 TYR H H N N 337 TYR H2 H N N 338 TYR HA H N N 339 TYR HB2 H N N 340 TYR HB3 H N N 341 TYR HD1 H N N 342 TYR HD2 H N N 343 TYR HE1 H N N 344 TYR HE2 H N N 345 TYR HH H N N 346 TYR HXT H N N 347 VAL N N N N 348 VAL CA C N S 349 VAL C C N N 350 VAL O O N N 351 VAL CB C N N 352 VAL CG1 C N N 353 VAL CG2 C N N 354 VAL OXT O N N 355 VAL H H N N 356 VAL H2 H N N 357 VAL HA H N N 358 VAL HB H N N 359 VAL HG11 H N N 360 VAL HG12 H N N 361 VAL HG13 H N N 362 VAL HG21 H N N 363 VAL HG22 H N N 364 VAL HG23 H N N 365 VAL HXT H N N 366 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 MET N CA sing N N 195 MET N H sing N N 196 MET N H2 sing N N 197 MET CA C sing N N 198 MET CA CB sing N N 199 MET CA HA sing N N 200 MET C O doub N N 201 MET C OXT sing N N 202 MET CB CG sing N N 203 MET CB HB2 sing N N 204 MET CB HB3 sing N N 205 MET CG SD sing N N 206 MET CG HG2 sing N N 207 MET CG HG3 sing N N 208 MET SD CE sing N N 209 MET CE HE1 sing N N 210 MET CE HE2 sing N N 211 MET CE HE3 sing N N 212 MET OXT HXT sing N N 213 PHE N CA sing N N 214 PHE N H sing N N 215 PHE N H2 sing N N 216 PHE CA C sing N N 217 PHE CA CB sing N N 218 PHE CA HA sing N N 219 PHE C O doub N N 220 PHE C OXT sing N N 221 PHE CB CG sing N N 222 PHE CB HB2 sing N N 223 PHE CB HB3 sing N N 224 PHE CG CD1 doub Y N 225 PHE CG CD2 sing Y N 226 PHE CD1 CE1 sing Y N 227 PHE CD1 HD1 sing N N 228 PHE CD2 CE2 doub Y N 229 PHE CD2 HD2 sing N N 230 PHE CE1 CZ doub Y N 231 PHE CE1 HE1 sing N N 232 PHE CE2 CZ sing Y N 233 PHE CE2 HE2 sing N N 234 PHE CZ HZ sing N N 235 PHE OXT HXT sing N N 236 PRO N CA sing N N 237 PRO N CD sing N N 238 PRO N H sing N N 239 PRO CA C sing N N 240 PRO CA CB sing N N 241 PRO CA HA sing N N 242 PRO C O doub N N 243 PRO C OXT sing N N 244 PRO CB CG sing N N 245 PRO CB HB2 sing N N 246 PRO CB HB3 sing N N 247 PRO CG CD sing N N 248 PRO CG HG2 sing N N 249 PRO CG HG3 sing N N 250 PRO CD HD2 sing N N 251 PRO CD HD3 sing N N 252 PRO OXT HXT sing N N 253 SER N CA sing N N 254 SER N H sing N N 255 SER N H2 sing N N 256 SER CA C sing N N 257 SER CA CB sing N N 258 SER CA HA sing N N 259 SER C O doub N N 260 SER C OXT sing N N 261 SER CB OG sing N N 262 SER CB HB2 sing N N 263 SER CB HB3 sing N N 264 SER OG HG sing N N 265 SER OXT HXT sing N N 266 THR N CA sing N N 267 THR N H sing N N 268 THR N H2 sing N N 269 THR CA C sing N N 270 THR CA CB sing N N 271 THR CA HA sing N N 272 THR C O doub N N 273 THR C OXT sing N N 274 THR CB OG1 sing N N 275 THR CB CG2 sing N N 276 THR CB HB sing N N 277 THR OG1 HG1 sing N N 278 THR CG2 HG21 sing N N 279 THR CG2 HG22 sing N N 280 THR CG2 HG23 sing N N 281 THR OXT HXT sing N N 282 TRP N CA sing N N 283 TRP N H sing N N 284 TRP N H2 sing N N 285 TRP CA C sing N N 286 TRP CA CB sing N N 287 TRP CA HA sing N N 288 TRP C O doub N N 289 TRP C OXT sing N N 290 TRP CB CG sing N N 291 TRP CB HB2 sing N N 292 TRP CB HB3 sing N N 293 TRP CG CD1 doub Y N 294 TRP CG CD2 sing Y N 295 TRP CD1 NE1 sing Y N 296 TRP CD1 HD1 sing N N 297 TRP CD2 CE2 doub Y N 298 TRP CD2 CE3 sing Y N 299 TRP NE1 CE2 sing Y N 300 TRP NE1 HE1 sing N N 301 TRP CE2 CZ2 sing Y N 302 TRP CE3 CZ3 doub Y N 303 TRP CE3 HE3 sing N N 304 TRP CZ2 CH2 doub Y N 305 TRP CZ2 HZ2 sing N N 306 TRP CZ3 CH2 sing Y N 307 TRP CZ3 HZ3 sing N N 308 TRP CH2 HH2 sing N N 309 TRP OXT HXT sing N N 310 TYR N CA sing N N 311 TYR N H sing N N 312 TYR N H2 sing N N 313 TYR CA C sing N N 314 TYR CA CB sing N N 315 TYR CA HA sing N N 316 TYR C O doub N N 317 TYR C OXT sing N N 318 TYR CB CG sing N N 319 TYR CB HB2 sing N N 320 TYR CB HB3 sing N N 321 TYR CG CD1 doub Y N 322 TYR CG CD2 sing Y N 323 TYR CD1 CE1 sing Y N 324 TYR CD1 HD1 sing N N 325 TYR CD2 CE2 doub Y N 326 TYR CD2 HD2 sing N N 327 TYR CE1 CZ doub Y N 328 TYR CE1 HE1 sing N N 329 TYR CE2 CZ sing Y N 330 TYR CE2 HE2 sing N N 331 TYR CZ OH sing N N 332 TYR OH HH sing N N 333 TYR OXT HXT sing N N 334 VAL N CA sing N N 335 VAL N H sing N N 336 VAL N H2 sing N N 337 VAL CA C sing N N 338 VAL CA CB sing N N 339 VAL CA HA sing N N 340 VAL C O doub N N 341 VAL C OXT sing N N 342 VAL CB CG1 sing N N 343 VAL CB CG2 sing N N 344 VAL CB HB sing N N 345 VAL CG1 HG11 sing N N 346 VAL CG1 HG12 sing N N 347 VAL CG1 HG13 sing N N 348 VAL CG2 HG21 sing N N 349 VAL CG2 HG22 sing N N 350 VAL CG2 HG23 sing N N 351 VAL OXT HXT sing N N 352 # _em_admin.current_status REL _em_admin.deposition_date 2025-01-14 _em_admin.deposition_site PDBJ _em_admin.entry_id 9LJ0 _em_admin.last_update 2026-01-21 _em_admin.map_release_date 2026-01-21 _em_admin.title 'The cryo-EM structure of amyloid fibrils from abdominal fat of an AL amyloidosis patient (case 3).' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.43 _em_helical_entity.axial_rise_per_subunit 4.80 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9LJ0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #