data_9LMC # _entry.id 9LMC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9LMC pdb_00009lmc 10.2210/pdb9lmc/pdb WWPDB D_1300055854 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-11-26 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9LMC _pdbx_database_status.recvd_initial_deposition_date 2025-01-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 9LJN _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email aimingren@zju.edu.cn _pdbx_contact_author.name_first Aiming _pdbx_contact_author.name_last Ren _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5420-4899 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, H.C.' 1 0009-0002-2998-6881 'Ren, A.M.' 2 0000-0002-5420-4899 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Ligand specificity and adaptability revealed by the first Guanine-II riboswitch tertiary structure.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf884 _citation.pdbx_database_id_PubMed 40966503 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Shen, X.' 2 ? primary 'Xu, X.' 3 ? primary 'Tai, X.' 4 ? primary 'He, M.' 5 ? primary 'Zhang, J.' 6 ? primary 'Ren, A.' 7 0000-0002-5420-4899 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRTg (71-MER)' 22802.533 2 ? ? ? ? 2 non-polymer syn GUANINE 151.126 2 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 9 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUUGUAUAAGCUCGUUAAUUUGGAAUGAGCGUAUCUACAGGCAACCGUAAAUUGCCCCAGGCUACAAUC _entity_poly.pdbx_seq_one_letter_code_can GGGUUGUAUAAGCUCGUUAAUUUGGAAUGAGCGUAUCUACAGGCAACCGUAAAUUGCCCCAGGCUACAAUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GUANINE GUN 3 'MANGANESE (II) ION' MN 4 "GUANOSINE-5'-TRIPHOSPHATE" GTP 5 'MAGNESIUM ION' MG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 U n 1 6 G n 1 7 U n 1 8 A n 1 9 U n 1 10 A n 1 11 A n 1 12 G n 1 13 C n 1 14 U n 1 15 C n 1 16 G n 1 17 U n 1 18 U n 1 19 A n 1 20 A n 1 21 U n 1 22 U n 1 23 U n 1 24 G n 1 25 G n 1 26 A n 1 27 A n 1 28 U n 1 29 G n 1 30 A n 1 31 G n 1 32 C n 1 33 G n 1 34 U n 1 35 A n 1 36 U n 1 37 C n 1 38 U n 1 39 A n 1 40 C n 1 41 A n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 G n 1 50 U n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 U n 1 56 G n 1 57 C n 1 58 C n 1 59 C n 1 60 C n 1 61 A n 1 62 G n 1 63 G n 1 64 C n 1 65 U n 1 66 A n 1 67 C n 1 68 A n 1 69 A n 1 70 U n 1 71 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 71 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Paenibacillus sp. FSL E2-0178' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2921361 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 U 28 28 28 U U A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 G 31 31 31 G G A . n A 1 32 C 32 32 32 C C A . n A 1 33 G 33 33 33 G G A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 A 41 41 41 A A A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 G 49 49 49 G G A . n A 1 50 U 50 50 50 U U A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 U 55 55 55 U U A . n A 1 56 G 56 56 56 G G A . n A 1 57 C 57 57 57 C C A . n A 1 58 C 58 58 58 C C A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 U 65 65 65 U U A . n A 1 66 A 66 66 66 A A A . n A 1 67 C 67 67 67 C C A . n A 1 68 A 68 68 68 A A A . n A 1 69 A 69 69 69 A A A . n A 1 70 U 70 70 70 U U A . n A 1 71 C 71 71 71 C C A . n B 1 1 G 1 1 ? ? ? B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 U 4 4 4 U U B . n B 1 5 U 5 5 5 U U B . n B 1 6 G 6 6 6 G G B . n B 1 7 U 7 7 7 U U B . n B 1 8 A 8 8 8 A A B . n B 1 9 U 9 9 9 U U B . n B 1 10 A 10 10 10 A A B . n B 1 11 A 11 11 11 A A B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 C 15 15 15 C C B . n B 1 16 G 16 16 16 G G B . n B 1 17 U 17 17 17 U U B . n B 1 18 U 18 18 18 U U B . n B 1 19 A 19 19 19 A A B . n B 1 20 A 20 20 20 A A B . n B 1 21 U 21 21 21 U U B . n B 1 22 U 22 22 22 U U B . n B 1 23 U 23 23 23 U U B . n B 1 24 G 24 24 24 G G B . n B 1 25 G 25 25 25 G G B . n B 1 26 A 26 26 26 A A B . n B 1 27 A 27 27 27 A A B . n B 1 28 U 28 28 28 U U B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 G 31 31 31 G G B . n B 1 32 C 32 32 32 C C B . n B 1 33 G 33 33 33 G G B . n B 1 34 U 34 34 34 U U B . n B 1 35 A 35 35 35 A A B . n B 1 36 U 36 36 36 U U B . n B 1 37 C 37 37 37 C C B . n B 1 38 U 38 38 38 U U B . n B 1 39 A 39 39 39 A A B . n B 1 40 C 40 40 40 C C B . n B 1 41 A 41 41 41 A A B . n B 1 42 G 42 42 42 G G B . n B 1 43 G 43 43 43 G G B . n B 1 44 C 44 44 44 C C B . n B 1 45 A 45 45 45 A A B . n B 1 46 A 46 46 46 A A B . n B 1 47 C 47 47 47 C C B . n B 1 48 C 48 48 48 C C B . n B 1 49 G 49 49 49 G G B . n B 1 50 U 50 50 50 U U B . n B 1 51 A 51 51 51 A A B . n B 1 52 A 52 52 52 A A B . n B 1 53 A 53 53 53 A A B . n B 1 54 U 54 54 54 U U B . n B 1 55 U 55 55 55 U U B . n B 1 56 G 56 56 56 G G B . n B 1 57 C 57 57 57 C C B . n B 1 58 C 58 58 58 C C B . n B 1 59 C 59 59 59 C C B . n B 1 60 C 60 60 60 C C B . n B 1 61 A 61 61 61 A A B . n B 1 62 G 62 62 62 G G B . n B 1 63 G 63 63 63 G G B . n B 1 64 C 64 64 64 C C B . n B 1 65 U 65 65 65 U U B . n B 1 66 A 66 66 66 A A B . n B 1 67 C 67 67 67 C C B . n B 1 68 A 68 68 68 A A B . n B 1 69 A 69 69 69 A A B . n B 1 70 U 70 70 70 U U B . n B 1 71 C 71 71 71 C C B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GUN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GUN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GUN 1 101 101 GUN GUN A . D 3 MN 1 102 1 MN MN A . E 3 MN 1 103 2 MN MN A . F 3 MN 1 104 3 MN MN A . G 3 MN 1 105 7 MN MN A . H 3 MN 1 106 8 MN MN A . I 3 MN 1 107 9 MN MN A . J 2 GUN 1 101 101 GUN GUN B . K 4 GTP 1 102 1 GTP GTP B . L 3 MN 1 103 4 MN MN B . M 3 MN 1 104 5 MN MN B . N 3 MN 1 105 6 MN MN B . O 5 MG 1 106 1 MG MG B . P 6 HOH 1 201 24 HOH HOH A . P 6 HOH 2 202 2 HOH HOH A . P 6 HOH 3 203 10 HOH HOH A . P 6 HOH 4 204 1 HOH HOH A . P 6 HOH 5 205 5 HOH HOH A . P 6 HOH 6 206 21 HOH HOH A . P 6 HOH 7 207 11 HOH HOH A . P 6 HOH 8 208 23 HOH HOH A . P 6 HOH 9 209 16 HOH HOH A . P 6 HOH 10 210 20 HOH HOH A . P 6 HOH 11 211 3 HOH HOH A . P 6 HOH 12 212 14 HOH HOH A . P 6 HOH 13 213 8 HOH HOH A . P 6 HOH 14 214 22 HOH HOH A . P 6 HOH 15 215 12 HOH HOH A . P 6 HOH 16 216 7 HOH HOH A . P 6 HOH 17 217 6 HOH HOH A . P 6 HOH 18 218 4 HOH HOH A . P 6 HOH 19 219 19 HOH HOH A . P 6 HOH 20 220 17 HOH HOH A . P 6 HOH 21 221 9 HOH HOH A . P 6 HOH 22 222 15 HOH HOH A . Q 6 HOH 1 201 32 HOH HOH B . Q 6 HOH 2 202 31 HOH HOH B . Q 6 HOH 3 203 29 HOH HOH B . Q 6 HOH 4 204 26 HOH HOH B . Q 6 HOH 5 205 25 HOH HOH B . Q 6 HOH 6 206 28 HOH HOH B . Q 6 HOH 7 207 30 HOH HOH B . Q 6 HOH 8 208 27 HOH HOH B . Q 6 HOH 9 209 18 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9LMC _cell.details ? _cell.formula_units_Z ? _cell.length_a 119.425 _cell.length_a_esd ? _cell.length_b 37.719 _cell.length_b_esd ? _cell.length_c 94.496 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9LMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9LMC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Sodium chloride, 0.04 M Sodium cacodylate trihydrate pH 7.0, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-06-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54975 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9LMC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.97 _reflns.d_resolution_low 119.43 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18498 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.121 _reflns.pdbx_Rpim_I_all 0.056 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.97 _reflns_shell.d_res_low 3.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1280 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.497 _reflns_shell.pdbx_Rpim_I_all 0.255 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.976 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.424 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9LMC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.97 _refine.ls_d_res_low 50.48 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16651 _refine.ls_number_reflns_R_free 1685 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.95 _refine.ls_percent_reflns_R_free 10.12 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2313 _refine.ls_R_factor_R_free 0.2732 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2264 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.86 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.49 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.97 _refine_hist.d_res_low 50.48 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 3094 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3031 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 3410 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.190 ? 5305 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 22.123 ? 1700 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 709 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 144 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.97 3.06 . . 132 1185 92.00 . . . . 0.4119 . . . . . . . . . . . 0.4202 'X-RAY DIFFRACTION' 3.06 3.16 . . 141 1215 96.00 . . . . 0.3317 . . . . . . . . . . . 0.3972 'X-RAY DIFFRACTION' 3.16 3.27 . . 140 1239 98.00 . . . . 0.3167 . . . . . . . . . . . 0.3742 'X-RAY DIFFRACTION' 3.27 3.40 . . 143 1235 97.00 . . . . 0.2783 . . . . . . . . . . . 0.3807 'X-RAY DIFFRACTION' 3.40 3.56 . . 136 1240 98.00 . . . . 0.2734 . . . . . . . . . . . 0.3145 'X-RAY DIFFRACTION' 3.56 3.75 . . 140 1273 98.00 . . . . 0.2688 . . . . . . . . . . . 0.3327 'X-RAY DIFFRACTION' 3.75 3.98 . . 141 1229 99.00 . . . . 0.2430 . . . . . . . . . . . 0.3007 'X-RAY DIFFRACTION' 3.98 4.29 . . 143 1289 100.00 . . . . 0.2204 . . . . . . . . . . . 0.2566 'X-RAY DIFFRACTION' 4.29 4.72 . . 146 1290 100.00 . . . . 0.2018 . . . . . . . . . . . 0.2578 'X-RAY DIFFRACTION' 4.72 5.40 . . 138 1261 99.00 . . . . 0.1945 . . . . . . . . . . . 0.2713 'X-RAY DIFFRACTION' 5.40 6.80 . . 137 1248 99.00 . . . . 0.1925 . . . . . . . . . . . 0.2212 'X-RAY DIFFRACTION' 6.80 50.48 . . 148 1262 99.00 . . . . 0.1746 . . . . . . . . . . . 0.2049 # _struct.entry_id 9LMC _struct.title 'Crystal structure of Guanine-II riboswitch in complex with guanine soaked with Mn2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9LMC _struct_keywords.text ;guanine-II riboswitch, 2'-deoxyguanosine, RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 4 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 5 ? P N N 6 ? Q N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9LMC _struct_ref.pdbx_db_accession 9LMC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9LMC A 1 ? 71 ? 9LMC 1 ? 71 ? 1 71 2 1 9LMC B 1 ? 71 ? 9LMC 1 ? 71 ? 1 71 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,P 2 1 B,J,K,L,M,N,O,Q # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B G 2 P ? ? ? 1_555 K GTP . "O3'" ? ? B G 2 B GTP 102 1_555 ? ? ? ? ? ? ? 1.570 ? ? metalc1 metalc ? ? A U 9 OP2 ? ? ? 1_555 I MN . MN ? ? A U 9 A MN 107 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc2 metalc ? ? A U 23 OP2 ? ? ? 1_555 D MN . MN ? ? A U 23 A MN 102 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc3 metalc ? ? A G 24 N7 ? ? ? 1_555 D MN . MN ? ? A G 24 A MN 102 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc5 metalc ? ? E MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 103 A HOH 213 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc6 metalc ? ? H MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 106 A HOH 205 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc7 metalc ? ? H MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 106 A HOH 217 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc8 metalc ? ? H MN . MN ? ? ? 1_555 P HOH . O ? ? A MN 106 A HOH 218 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc9 metalc ? ? B U 23 OP2 ? ? ? 1_555 N MN . MN ? ? B U 23 B MN 105 1_555 ? ? ? ? ? ? ? 2.420 ? ? metalc10 metalc ? ? B G 24 N7 ? ? ? 1_555 N MN . MN ? ? B G 24 B MN 105 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc11 metalc ? ? B C 71 "O2'" ? ? ? 1_555 O MG . MG ? ? B C 71 B MG 106 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc12 metalc ? ? B C 71 O2 ? ? ? 1_555 O MG . MG ? ? B C 71 B MG 106 1_555 ? ? ? ? ? ? ? 2.313 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A U 70 O2 ? ? A G 3 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 O6 ? ? ? 1_555 A U 70 N3 ? ? A G 3 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 69 N1 ? ? A U 4 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 69 N6 ? ? A U 4 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 5 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 5 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 8 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 8 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 39 N1 ? ? A U 9 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 39 N6 ? ? A U 9 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A G 33 N2 ? ? A A 10 A G 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A G 33 N3 ? ? A A 10 A G 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog21 hydrog ? ? A A 11 N6 ? ? ? 1_555 A A 61 N1 ? ? A A 11 A A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog22 hydrog ? ? A A 11 N7 ? ? ? 1_555 A A 61 N6 ? ? A A 11 A A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 12 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 13 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 30 N1 ? ? A U 14 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 14 A A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 15 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 A U 28 O2 ? ? A G 16 A U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A U 28 N3 ? ? A G 16 A U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 17 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 17 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 18 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 18 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 20 N6 ? ? ? 1_555 A A 53 N1 ? ? A A 20 A A 53 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 21 O2 ? ? ? 1_555 A G 24 N2 ? ? A U 21 A G 24 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 52 N1 ? ? A U 21 A A 52 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog43 hydrog ? ? A U 21 O2 ? ? ? 1_555 A A 52 N6 ? ? A U 21 A A 52 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog44 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 24 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 24 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 24 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 25 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 25 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 25 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N3 ? ? ? 1_555 A A 53 N6 ? ? A G 25 A A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A G 33 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 33 A A 39 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 34 N3 ? ? ? 1_555 A U 38 O4 ? ? A U 34 A U 38 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog53 hydrog ? ? A U 36 N3 ? ? ? 1_555 A A 66 N3 ? ? A U 36 A A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog54 hydrog ? ? A C 37 N4 ? ? ? 1_555 A U 65 O2 ? ? A C 37 A U 65 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog55 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 41 N1 ? ? ? 1_555 A C 59 N4 ? ? A A 41 A C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog59 hydrog ? ? A A 41 N6 ? ? ? 1_555 A C 59 N3 ? ? A A 41 A C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog60 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 45 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 45 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 46 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 46 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 O2 ? ? ? 1_555 A U 54 N3 ? ? A C 47 A U 54 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog74 hydrog ? ? A C 48 O2 ? ? ? 1_555 A A 52 N6 ? ? A C 48 A A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog75 hydrog ? ? A C 48 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 48 A A 53 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog76 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 71 N3 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 71 O2 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 3 N1 ? ? ? 1_555 B U 70 O2 ? ? B G 3 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog80 hydrog ? ? B G 3 O6 ? ? ? 1_555 B U 70 N3 ? ? B G 3 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog81 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 69 N1 ? ? B U 4 B A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 69 N6 ? ? B U 4 B A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 68 N1 ? ? B U 5 B A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 68 N6 ? ? B U 5 B A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 67 N3 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 67 O2 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 67 N4 ? ? B G 6 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 66 N1 ? ? B U 7 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 66 N6 ? ? B U 7 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 8 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 8 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 8 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 9 O4 ? ? ? 1_555 B G 33 N2 ? ? B U 9 B G 33 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog93 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 39 N1 ? ? B U 9 B A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 39 N6 ? ? B U 9 B A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B A 10 N1 ? ? ? 1_555 B G 33 N2 ? ? B A 10 B G 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog96 hydrog ? ? B A 10 N6 ? ? ? 1_555 B G 33 N3 ? ? B A 10 B G 33 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog97 hydrog ? ? B A 11 N6 ? ? ? 1_555 B A 61 N1 ? ? B A 11 B A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog98 hydrog ? ? B A 11 N7 ? ? ? 1_555 B A 61 N6 ? ? B A 11 B A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog99 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 12 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 12 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 12 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 13 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 13 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 13 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 14 N3 ? ? ? 1_555 B A 30 N1 ? ? B U 14 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B U 14 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 14 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 16 N1 ? ? ? 1_555 B U 28 O2 ? ? B G 16 B U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog111 hydrog ? ? B G 16 O6 ? ? ? 1_555 B U 28 N3 ? ? B G 16 B U 28 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog112 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 27 N1 ? ? B U 17 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 27 N6 ? ? B U 17 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 26 N1 ? ? B U 18 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 26 N6 ? ? B U 18 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B A 20 N6 ? ? ? 1_555 B A 53 N1 ? ? B A 20 B A 53 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog117 hydrog ? ? B U 21 O2 ? ? ? 1_555 B G 24 N2 ? ? B U 21 B G 24 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog118 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 52 N1 ? ? B U 21 B A 52 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog119 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 24 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 24 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 24 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 25 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 25 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 25 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B U 34 N3 ? ? ? 1_555 B U 38 O4 ? ? B U 34 B U 38 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog126 hydrog ? ? B U 36 N3 ? ? ? 1_555 B A 66 N3 ? ? B U 36 B A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog127 hydrog ? ? B C 37 N4 ? ? ? 1_555 B U 65 O2 ? ? B C 37 B U 65 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog128 hydrog ? ? B C 40 N3 ? ? ? 1_555 B G 62 N1 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B C 40 N4 ? ? ? 1_555 B G 62 O6 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B C 40 O2 ? ? ? 1_555 B G 62 N2 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B A 41 N1 ? ? ? 1_555 B C 59 N4 ? ? B A 41 B C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog132 hydrog ? ? B A 41 N6 ? ? ? 1_555 B C 59 N3 ? ? B A 41 B C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog133 hydrog ? ? B G 42 N1 ? ? ? 1_555 B C 58 N3 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B G 42 N2 ? ? ? 1_555 B C 58 O2 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B G 42 O6 ? ? ? 1_555 B C 58 N4 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B G 43 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B G 43 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B G 43 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B C 44 N3 ? ? ? 1_555 B G 56 N1 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B C 44 N4 ? ? ? 1_555 B G 56 O6 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B C 44 O2 ? ? ? 1_555 B G 56 N2 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B A 45 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 45 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B A 45 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 45 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B A 46 N1 ? ? ? 1_555 B U 54 N3 ? ? B A 46 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B A 46 N6 ? ? ? 1_555 B U 54 O4 ? ? B A 46 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B C 48 O2 ? ? ? 1_555 B A 52 N6 ? ? B C 48 B A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog147 hydrog ? ? B C 48 O2 ? ? ? 1_555 B A 53 N6 ? ? B C 48 B A 53 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A U 23 ? A U 23 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 N7 ? A G 24 ? A G 24 ? 1_555 88.6 ? 2 O ? P HOH . ? A HOH 203 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? P HOH . ? A HOH 213 ? 1_555 84.7 ? 3 O ? P HOH . ? A HOH 205 ? 1_555 MN ? H MN . ? A MN 106 ? 1_555 O ? P HOH . ? A HOH 217 ? 1_555 120.2 ? 4 O ? P HOH . ? A HOH 205 ? 1_555 MN ? H MN . ? A MN 106 ? 1_555 O ? P HOH . ? A HOH 218 ? 1_555 75.4 ? 5 O ? P HOH . ? A HOH 217 ? 1_555 MN ? H MN . ? A MN 106 ? 1_555 O ? P HOH . ? A HOH 218 ? 1_555 97.7 ? 6 OP2 ? B U 23 ? B U 23 ? 1_555 MN ? N MN . ? B MN 105 ? 1_555 N7 ? B G 24 ? B G 24 ? 1_555 91.8 ? 7 "O2'" ? B C 71 ? B C 71 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 O2 ? B C 71 ? B C 71 ? 1_555 82.3 ? # _pdbx_entry_details.entry_id 9LMC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 206 ? ? O B HOH 208 ? ? 2.09 2 1 O A HOH 202 ? ? O A HOH 217 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A C 60 ? ? C2 A C 60 ? ? O2 A C 60 ? ? 123.61 118.90 4.71 0.60 N 2 1 N3 A C 60 ? ? C2 A C 60 ? ? O2 A C 60 ? ? 117.20 121.90 -4.70 0.70 N 3 1 C6 B C 15 ? ? N1 B C 15 ? ? C2 B C 15 ? ? 117.71 120.30 -2.59 0.40 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MN _pdbx_struct_special_symmetry.auth_seq_id 104 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id MN _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -30.9806 _pdbx_refine_tls.origin_y 2.9136 _pdbx_refine_tls.origin_z -23.6254 _pdbx_refine_tls.T[1][1] 0.4271 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0062 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0571 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.5207 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0087 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.5932 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] -0.0557 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.4833 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.4678 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 4.2457 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -1.9006 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.7467 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0613 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.1463 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.2892 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.3410 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.4381 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.5527 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.1466 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.2436 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.1764 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id G _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id G _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 GUN N9 N Y N 159 GUN C8 C Y N 160 GUN N7 N Y N 161 GUN C5 C Y N 162 GUN C6 C N N 163 GUN O6 O N N 164 GUN N1 N N N 165 GUN C2 C N N 166 GUN N2 N N N 167 GUN N3 N N N 168 GUN C4 C Y N 169 GUN HN9 H N N 170 GUN H8 H N N 171 GUN HN1 H N N 172 GUN HN21 H N N 173 GUN HN22 H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 MG MG MG N N 178 MN MN MN N N 179 U OP3 O N N 180 U P P N N 181 U OP1 O N N 182 U OP2 O N N 183 U "O5'" O N N 184 U "C5'" C N N 185 U "C4'" C N R 186 U "O4'" O N N 187 U "C3'" C N S 188 U "O3'" O N N 189 U "C2'" C N R 190 U "O2'" O N N 191 U "C1'" C N R 192 U N1 N N N 193 U C2 C N N 194 U O2 O N N 195 U N3 N N N 196 U C4 C N N 197 U O4 O N N 198 U C5 C N N 199 U C6 C N N 200 U HOP3 H N N 201 U HOP2 H N N 202 U "H5'" H N N 203 U "H5''" H N N 204 U "H4'" H N N 205 U "H3'" H N N 206 U "HO3'" H N N 207 U "H2'" H N N 208 U "HO2'" H N N 209 U "H1'" H N N 210 U H3 H N N 211 U H5 H N N 212 U H6 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 GUN N9 C8 sing Y N 166 GUN N9 C4 sing Y N 167 GUN N9 HN9 sing N N 168 GUN C8 N7 doub Y N 169 GUN C8 H8 sing N N 170 GUN N7 C5 sing Y N 171 GUN C5 C6 sing N N 172 GUN C5 C4 doub Y N 173 GUN C6 O6 doub N N 174 GUN C6 N1 sing N N 175 GUN N1 C2 sing N N 176 GUN N1 HN1 sing N N 177 GUN C2 N2 sing N N 178 GUN C2 N3 doub N N 179 GUN N2 HN21 sing N N 180 GUN N2 HN22 sing N N 181 GUN N3 C4 sing N N 182 HOH O H1 sing N N 183 HOH O H2 sing N N 184 U OP3 P sing N N 185 U OP3 HOP3 sing N N 186 U P OP1 doub N N 187 U P OP2 sing N N 188 U P "O5'" sing N N 189 U OP2 HOP2 sing N N 190 U "O5'" "C5'" sing N N 191 U "C5'" "C4'" sing N N 192 U "C5'" "H5'" sing N N 193 U "C5'" "H5''" sing N N 194 U "C4'" "O4'" sing N N 195 U "C4'" "C3'" sing N N 196 U "C4'" "H4'" sing N N 197 U "O4'" "C1'" sing N N 198 U "C3'" "O3'" sing N N 199 U "C3'" "C2'" sing N N 200 U "C3'" "H3'" sing N N 201 U "O3'" "HO3'" sing N N 202 U "C2'" "O2'" sing N N 203 U "C2'" "C1'" sing N N 204 U "C2'" "H2'" sing N N 205 U "O2'" "HO2'" sing N N 206 U "C1'" N1 sing N N 207 U "C1'" "H1'" sing N N 208 U N1 C2 sing N N 209 U N1 C6 sing N N 210 U C2 O2 doub N N 211 U C2 N3 sing N N 212 U N3 C4 sing N N 213 U N3 H3 sing N N 214 U C4 O4 doub N N 215 U C4 C5 sing N N 216 U C5 C6 doub N N 217 U C5 H5 sing N N 218 U C6 H6 sing N N 219 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9LMC 'double helix' 9LMC 'a-form double helix' 9LMC 'hairpin loop' 9LMC 'mismatched base pair' 9LMC 'triple helix' 9LMC 'quadruple helix' 9LMC 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 71 1_555 0.752 -0.397 -0.135 -0.287 2.490 -5.013 1 A_G2:C71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A U 70 1_555 -3.771 -0.533 -0.041 -6.381 -18.746 27.547 2 A_G3:U70_A A 3 ? A 70 ? 28 1 1 A U 4 1_555 A A 69 1_555 -0.347 0.273 0.170 -3.484 -3.403 4.118 3 A_U4:A69_A A 4 ? A 69 ? 20 1 1 A U 5 1_555 A A 68 1_555 0.531 0.086 -0.457 1.473 -22.786 -2.797 4 A_U5:A68_A A 5 ? A 68 ? 20 1 1 A G 6 1_555 A C 67 1_555 0.126 0.460 0.375 -17.798 -7.771 2.882 5 A_G6:C67_A A 6 ? A 67 ? 19 1 1 A U 7 1_555 A A 66 1_555 1.042 -0.335 0.820 -13.303 -6.528 -17.960 6 A_U7:A66_A A 7 ? A 66 ? 20 1 1 A A 8 1_555 A U 65 1_555 -1.182 -0.053 0.479 0.477 -11.063 -5.526 7 A_A8:U65_A A 8 ? A 65 ? 20 1 1 A U 38 1_555 A U 34 1_555 -3.480 -0.763 1.234 -27.495 39.200 -66.886 8 A_U38:U34_A A 38 ? A 34 ? ? ? 1 A U 9 1_555 A A 39 1_555 -0.754 -0.251 -0.875 20.065 -17.374 7.854 9 A_U9:A39_A A 9 ? A 39 ? 20 1 1 A A 10 1_555 A G 33 1_555 -3.713 3.596 -0.028 10.476 1.049 67.962 10 A_A10:G33_A A 10 ? A 33 ? 10 6 1 A G 12 1_555 A C 32 1_555 -0.964 0.126 -0.030 -2.124 -1.331 9.733 11 A_G12:C32_A A 12 ? A 32 ? 19 1 1 A C 13 1_555 A G 31 1_555 -0.433 -0.119 0.120 3.060 -7.724 -4.990 12 A_C13:G31_A A 13 ? A 31 ? 19 1 1 A U 14 1_555 A A 30 1_555 -0.038 0.278 0.020 -4.729 -1.871 5.797 13 A_U14:A30_A A 14 ? A 30 ? 20 1 1 A C 15 1_555 A G 29 1_555 -0.556 -0.381 -0.098 -5.845 -2.941 -5.719 14 A_C15:G29_A A 15 ? A 29 ? 19 1 1 A G 16 1_555 A U 28 1_555 -1.572 -0.664 0.136 -12.250 -9.669 -4.401 15 A_G16:U28_A A 16 ? A 28 ? 28 1 1 A U 17 1_555 A A 27 1_555 0.187 0.035 -0.014 -5.549 -17.409 2.513 16 A_U17:A27_A A 17 ? A 27 ? 20 1 1 A U 18 1_555 A A 26 1_555 0.041 0.416 -0.048 5.162 1.790 5.697 17 A_U18:A26_A A 18 ? A 26 ? 20 1 1 A A 20 1_555 A A 53 1_555 -1.843 0.903 0.705 22.206 -4.252 147.716 18 A_A20:A53_A A 20 ? A 53 ? ? 2 1 A U 21 1_555 A A 52 1_555 0.734 1.922 -1.353 9.087 1.815 172.614 19 A_U21:A52_A A 21 ? A 52 ? 21 2 1 A G 24 1_555 A C 48 1_555 0.326 -0.037 0.904 8.508 -6.649 -1.113 20 A_G24:C48_A A 24 ? A 48 ? 19 1 1 A G 25 1_555 A C 47 1_555 0.123 0.078 0.148 15.919 -11.205 -0.760 21 A_G25:C47_A A 25 ? A 47 ? 19 1 1 A U 54 1_555 A A 46 1_555 0.039 -0.221 -1.175 13.784 -7.945 0.760 22 A_U54:A46_A A 54 ? A 46 ? 20 1 1 A U 55 1_555 A A 45 1_555 -0.044 -0.265 0.392 -10.996 2.258 0.770 23 A_U55:A45_A A 55 ? A 45 ? 20 1 1 A G 56 1_555 A C 44 1_555 0.251 -0.137 0.022 -7.037 -21.278 4.159 24 A_G56:C44_A A 56 ? A 44 ? 19 1 1 A C 57 1_555 A G 43 1_555 -0.141 -0.109 0.073 -4.275 -18.683 -4.052 25 A_C57:G43_A A 57 ? A 43 ? 19 1 1 A C 58 1_555 A G 42 1_555 -0.090 -0.099 0.825 -5.981 -1.718 -2.802 26 A_C58:G42_A A 58 ? A 42 ? 19 1 1 A C 59 1_555 A A 41 1_555 0.173 1.100 0.222 -13.183 -0.746 -176.214 27 A_C59:A41_A A 59 ? A 41 ? 26 2 1 A A 61 1_555 A A 11 1_555 4.138 1.241 -0.796 -7.351 -15.584 -112.358 28 A_A61:A11_A A 61 ? A 11 ? 5 4 1 A G 62 1_555 A C 40 1_555 0.766 -0.267 0.237 3.410 -3.563 -1.866 29 A_G62:C40_A A 62 ? A 40 ? 19 1 1 B G 2 1_555 B C 71 1_555 -1.724 -0.408 0.608 17.118 0.143 -4.067 30 B_G2:C71_B B 2 ? B 71 ? 19 1 1 B G 3 1_555 B U 70 1_555 -3.135 -0.907 -0.201 30.454 -15.075 8.853 31 B_G3:U70_B B 3 ? B 70 ? 28 1 1 B U 4 1_555 B A 69 1_555 -0.951 0.060 -1.032 15.055 -4.367 -10.813 32 B_U4:A69_B B 4 ? B 69 ? 20 1 1 B U 5 1_555 B A 68 1_555 -1.022 -0.100 1.174 -12.633 -13.722 10.393 33 B_U5:A68_B B 5 ? B 68 ? 20 1 1 B G 6 1_555 B C 67 1_555 -0.851 -0.558 0.652 0.470 -24.815 -13.404 34 B_G6:C67_B B 6 ? B 67 ? 19 1 1 B U 7 1_555 B A 66 1_555 -0.863 0.608 0.266 2.381 -25.196 -5.642 35 B_U7:A66_B B 7 ? B 66 ? 20 1 1 B A 8 1_555 B U 65 1_555 -0.355 0.128 0.306 3.991 -6.801 -9.387 36 B_A8:U65_B B 8 ? B 65 ? 20 1 1 B U 38 1_555 B U 34 1_555 -3.664 -0.833 1.608 -19.530 45.664 -59.111 37 B_U38:U34_B B 38 ? B 34 ? ? ? 1 B U 9 1_555 B A 39 1_555 -0.260 -0.108 -1.362 27.727 -17.907 6.445 38 B_U9:A39_B B 9 ? B 39 ? 20 1 1 B A 10 1_555 B G 33 1_555 -3.749 4.114 0.182 9.737 -7.256 67.921 39 B_A10:G33_B B 10 ? B 33 ? 10 6 1 B G 12 1_555 B C 32 1_555 -0.597 0.114 -0.557 -10.980 -3.278 7.851 40 B_G12:C32_B B 12 ? B 32 ? 19 1 1 B C 13 1_555 B G 31 1_555 -0.457 -0.007 -0.067 -3.811 -8.285 1.644 41 B_C13:G31_B B 13 ? B 31 ? 19 1 1 B U 14 1_555 B A 30 1_555 -0.834 0.444 -0.487 -9.325 -6.033 2.673 42 B_U14:A30_B B 14 ? B 30 ? 20 1 1 B C 15 1_555 B G 29 1_555 -0.119 0.186 -0.316 -13.036 -1.797 9.347 43 B_C15:G29_B B 15 ? B 29 ? 19 1 1 B G 16 1_555 B U 28 1_555 -2.200 -0.587 0.222 -17.586 -6.890 1.417 44 B_G16:U28_B B 16 ? B 28 ? 28 1 1 B U 17 1_555 B A 27 1_555 -0.316 -0.090 0.220 -9.099 -16.479 0.430 45 B_U17:A27_B B 17 ? B 27 ? 20 1 1 B U 18 1_555 B A 26 1_555 -0.095 0.126 0.081 9.934 -8.371 -0.292 46 B_U18:A26_B B 18 ? B 26 ? 20 1 1 B A 20 1_555 B A 53 1_555 -2.113 0.295 0.447 20.348 -5.203 147.158 47 B_A20:A53_B B 20 ? B 53 ? ? ? 1 B U 21 1_555 B A 52 1_555 0.153 2.569 -0.341 16.002 -3.460 147.550 48 B_U21:A52_B B 21 ? B 52 ? ? 2 1 B G 24 1_555 B C 48 1_555 -0.069 0.049 0.708 6.459 0.019 -1.763 49 B_G24:C48_B B 24 ? B 48 ? 19 1 1 B G 25 1_555 B C 47 1_555 0.446 -0.195 -0.038 13.390 -11.835 -0.975 50 B_G25:C47_B B 25 ? B 47 ? 19 1 1 B U 54 1_555 B A 46 1_555 -0.445 -0.370 -0.487 3.383 3.846 -3.793 51 B_U54:A46_B B 54 ? B 46 ? 20 1 1 B U 55 1_555 B A 45 1_555 -0.197 0.081 0.212 -8.259 -10.088 8.219 52 B_U55:A45_B B 55 ? B 45 ? 20 1 1 B G 56 1_555 B C 44 1_555 -0.048 0.158 0.121 -3.705 -15.748 7.854 53 B_G56:C44_B B 56 ? B 44 ? 19 1 1 B C 57 1_555 B G 43 1_555 -0.415 -0.260 -0.288 1.023 -20.419 -5.310 54 B_C57:G43_B B 57 ? B 43 ? 19 1 1 B C 58 1_555 B G 42 1_555 0.173 0.102 0.587 -5.102 -7.785 3.579 55 B_C58:G42_B B 58 ? B 42 ? 19 1 1 B C 59 1_555 B A 41 1_555 0.372 1.175 0.262 -5.259 2.289 -173.928 56 B_C59:A41_B B 59 ? B 41 ? 26 2 1 B A 61 1_555 B A 11 1_555 3.976 1.815 -0.738 -11.972 -16.666 -122.638 57 B_A61:A11_B B 61 ? B 11 ? 5 4 1 B G 62 1_555 B C 40 1_555 0.806 -0.177 0.622 2.994 -8.815 3.594 58 B_G62:C40_B B 62 ? B 40 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 71 1_555 A G 3 1_555 A U 70 1_555 1.940 -1.663 2.710 -3.503 19.677 29.502 -4.607 -3.516 1.174 34.148 6.080 35.510 1 AA_G2G3:U70C71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A U 70 1_555 A U 4 1_555 A A 69 1_555 -1.385 -0.973 3.283 -9.072 5.401 44.740 -1.729 0.968 3.355 6.980 11.725 45.906 2 AA_G3U4:A69U70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A U 4 1_555 A A 69 1_555 A U 5 1_555 A A 68 1_555 -0.714 -1.129 3.245 6.841 -3.724 33.297 -1.339 2.286 3.145 -6.390 -11.740 34.170 3 AA_U4U5:A68A69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A U 5 1_555 A A 68 1_555 A G 6 1_555 A C 67 1_555 0.044 -1.643 3.578 -6.833 13.866 28.336 -5.398 -1.280 2.456 26.021 12.823 32.203 4 AA_U5G6:C67A68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A G 6 1_555 A C 67 1_555 A U 7 1_555 A A 66 1_555 -0.910 -1.701 3.107 -2.133 5.344 40.812 -2.951 1.081 2.913 7.618 3.041 41.199 5 AA_G6U7:A66C67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A U 7 1_555 A A 66 1_555 A A 8 1_555 A U 65 1_555 0.564 -2.033 2.515 4.105 14.251 19.234 -7.486 -0.581 0.911 36.438 -10.495 24.245 6 AA_U7A8:U65A66_AA A 7 ? A 66 ? A 8 ? A 65 ? 1 A A 8 1_555 A U 65 1_555 A U 38 1_555 A U 34 1_555 -1.588 6.616 1.641 19.043 -0.235 162.777 3.345 0.823 1.598 -0.119 -9.628 163.017 7 AA_A8U38:U34U65_AA A 8 ? A 65 ? A 38 ? A 34 ? 1 A U 38 1_555 A U 34 1_555 A U 9 1_555 A A 39 1_555 -0.311 -3.718 -0.288 -145.936 -10.084 158.876 -1.863 0.177 -0.184 -5.061 73.237 173.906 8 AA_U38U9:A39U34_AA A 38 ? A 34 ? A 9 ? A 39 ? 1 A U 9 1_555 A A 39 1_555 A A 10 1_555 A G 33 1_555 0.446 1.690 -2.435 -11.797 -6.507 -10.571 -8.038 5.776 -0.561 25.137 -45.577 -17.110 9 AA_U9A10:G33A39_AA A 9 ? A 39 ? A 10 ? A 33 ? 1 A A 10 1_555 A G 33 1_555 A G 12 1_555 A C 32 1_555 -1.558 -3.341 -1.260 127.401 -110.766 59.775 -1.868 0.561 0.250 -57.219 -65.812 170.311 10 AA_A10G12:C32G33_AA A 10 ? A 33 ? A 12 ? A 32 ? 1 A G 12 1_555 A C 32 1_555 A C 13 1_555 A G 31 1_555 -0.840 -2.269 3.216 -1.597 -4.195 36.615 -3.003 1.106 3.478 -6.646 2.530 36.880 11 AA_G12C13:G31C32_AA A 12 ? A 32 ? A 13 ? A 31 ? 1 A C 13 1_555 A G 31 1_555 A U 14 1_555 A A 30 1_555 -0.024 -1.939 3.289 1.294 11.369 30.565 -5.244 0.246 2.429 20.678 -2.354 32.589 12 AA_C13U14:A30G31_AA A 13 ? A 31 ? A 14 ? A 30 ? 1 A U 14 1_555 A A 30 1_555 A C 15 1_555 A G 29 1_555 -0.491 -1.566 3.292 1.976 4.362 27.859 -4.185 1.448 2.975 8.976 -4.066 28.260 13 AA_U14C15:G29A30_AA A 14 ? A 30 ? A 15 ? A 29 ? 1 A C 15 1_555 A G 29 1_555 A G 16 1_555 A U 28 1_555 1.493 -1.935 3.438 -1.315 9.154 28.074 -5.647 -3.194 2.619 18.254 2.623 29.529 14 AA_C15G16:U28G29_AA A 15 ? A 29 ? A 16 ? A 28 ? 1 A G 16 1_555 A U 28 1_555 A U 17 1_555 A A 27 1_555 -0.274 -1.592 3.027 1.099 5.446 35.044 -3.323 0.593 2.747 8.975 -1.810 35.468 15 AA_G16U17:A27U28_AA A 16 ? A 28 ? A 17 ? A 27 ? 1 A U 17 1_555 A A 27 1_555 A U 18 1_555 A A 26 1_555 0.190 -1.795 2.975 -4.320 8.022 25.178 -5.593 -1.333 2.243 17.681 9.521 26.751 16 AA_U17U18:A26A27_AA A 17 ? A 27 ? A 18 ? A 26 ? 1 A A 20 1_555 A A 53 1_555 A U 21 1_555 A A 52 1_555 -0.400 0.455 3.007 3.524 19.264 30.318 -1.901 1.130 2.746 32.878 -6.015 35.968 17 AA_A20U21:A52A53_AA A 20 ? A 53 ? A 21 ? A 52 ? 1 A G 24 1_555 A C 48 1_555 A G 25 1_555 A C 47 1_555 0.638 -1.377 3.039 7.362 10.317 28.042 -4.389 0.073 2.476 20.045 -14.305 30.721 18 AA_G24G25:C47C48_AA A 24 ? A 48 ? A 25 ? A 47 ? 1 A G 25 1_555 A C 47 1_555 A U 54 1_555 A A 46 1_555 -2.392 -0.479 2.903 1.913 10.620 51.896 -1.128 2.790 2.680 11.988 -2.159 52.930 19 AA_G25U54:A46C47_AA A 25 ? A 47 ? A 54 ? A 46 ? 1 A U 54 1_555 A A 46 1_555 A U 55 1_555 A A 45 1_555 -0.447 -2.493 4.192 -10.216 4.252 32.306 -5.100 -1.278 3.805 7.376 17.723 34.101 20 AA_U54U55:A45A46_AA A 54 ? A 46 ? A 55 ? A 45 ? 1 A U 55 1_555 A A 45 1_555 A G 56 1_555 A C 44 1_555 -0.196 -1.697 2.974 4.460 5.041 31.244 -3.875 1.055 2.622 9.226 -8.162 31.943 21 AA_U55G56:C44A45_AA A 55 ? A 45 ? A 56 ? A 44 ? 1 A G 56 1_555 A C 44 1_555 A C 57 1_555 A G 43 1_555 -0.614 -1.385 3.036 -0.957 4.594 30.203 -3.447 0.995 2.818 8.750 1.822 30.557 22 AA_G56C57:G43C44_AA A 56 ? A 44 ? A 57 ? A 43 ? 1 A C 57 1_555 A G 43 1_555 A C 58 1_555 A G 42 1_555 0.561 -1.375 3.254 -3.676 5.187 37.040 -2.785 -1.330 2.974 8.092 5.735 37.563 23 AA_C57C58:G42G43_AA A 57 ? A 43 ? A 58 ? A 42 ? 1 A C 58 1_555 A G 42 1_555 A C 59 1_555 A A 41 1_555 3.281 -0.639 0.234 -84.926 -140.980 -161.773 0.342 1.628 0.411 70.572 -42.513 -177.565 24 AA_C58C59:A41G42_AA A 58 ? A 42 ? A 59 ? A 41 ? 1 A C 59 1_555 A A 41 1_555 A A 61 1_555 A A 11 1_555 -2.265 2.622 0.451 -153.586 -82.284 74.435 1.468 0.843 0.876 -41.679 77.795 175.413 25 AA_C59A61:A11A41_AA A 59 ? A 41 ? A 61 ? A 11 ? 1 A A 61 1_555 A A 11 1_555 A G 62 1_555 A C 40 1_555 0.638 -1.218 3.132 -3.171 8.362 -22.174 0.108 0.467 3.415 -20.692 -7.848 -23.888 26 AA_A61G62:C40A11_AA A 61 ? A 11 ? A 62 ? A 40 ? 1 B G 2 1_555 B C 71 1_555 B G 3 1_555 B U 70 1_555 1.799 -1.794 2.661 -2.744 12.803 11.135 -10.189 -6.921 0.110 48.684 10.434 17.172 27 BB_G2G3:U70C71_BB B 2 ? B 71 ? B 3 ? B 70 ? 1 B G 3 1_555 B U 70 1_555 B U 4 1_555 B A 69 1_555 -1.258 -0.955 3.609 -2.972 21.516 43.384 -2.948 1.292 2.930 27.173 3.753 48.281 28 BB_G3U4:A69U70_BB B 3 ? B 70 ? B 4 ? B 69 ? 1 B U 4 1_555 B A 69 1_555 B U 5 1_555 B A 68 1_555 0.440 -1.587 3.897 -17.119 1.656 34.082 -2.677 -3.191 3.243 2.628 27.168 38.060 29 BB_U4U5:A68A69_BB B 4 ? B 69 ? B 5 ? B 68 ? 1 B U 5 1_555 B A 68 1_555 B G 6 1_555 B C 67 1_555 0.169 -1.526 2.549 5.065 5.898 16.660 -7.093 1.458 1.873 19.063 -16.372 18.373 30 BB_U5G6:C67A68_BB B 5 ? B 68 ? B 6 ? B 67 ? 1 B G 6 1_555 B C 67 1_555 B U 7 1_555 B A 66 1_555 0.277 -0.992 2.835 -0.556 9.425 39.717 -2.290 -0.449 2.541 13.639 0.805 40.779 31 BB_G6U7:A66C67_BB B 6 ? B 67 ? B 7 ? B 66 ? 1 B U 7 1_555 B A 66 1_555 B A 8 1_555 B U 65 1_555 0.077 -1.207 3.102 -3.924 17.849 30.122 -4.284 -0.630 2.064 31.016 6.820 35.123 32 BB_U7A8:U65A66_BB B 7 ? B 66 ? B 8 ? B 65 ? 1 B A 8 1_555 B U 65 1_555 B U 38 1_555 B U 34 1_555 -1.634 6.851 1.226 20.595 -4.322 156.414 3.501 0.856 1.111 -2.206 -10.514 156.816 33 BB_A8U38:U34U65_BB B 8 ? B 65 ? B 38 ? B 34 ? 1 B U 38 1_555 B U 34 1_555 B U 9 1_555 B A 39 1_555 -0.608 -4.120 -0.412 -141.204 -4.299 146.580 -2.071 0.348 -0.196 -2.172 71.362 169.058 34 BB_U38U9:A39U34_BB B 38 ? B 34 ? B 9 ? B 39 ? 1 B U 9 1_555 B A 39 1_555 B A 10 1_555 B G 33 1_555 0.615 1.373 -2.499 -14.041 -4.337 -13.747 -5.209 5.888 -0.992 13.911 -45.035 -20.097 35 BB_U9A10:G33A39_BB B 9 ? B 39 ? B 10 ? B 33 ? 1 B A 10 1_555 B G 33 1_555 B G 12 1_555 B C 32 1_555 -1.595 -3.863 -1.022 122.798 -110.856 80.235 -2.036 0.695 0.409 -57.154 -63.311 168.874 36 BB_A10G12:C32G33_BB B 10 ? B 33 ? B 12 ? B 32 ? 1 B G 12 1_555 B C 32 1_555 B C 13 1_555 B G 31 1_555 -0.821 -1.896 3.046 -1.079 -3.911 37.174 -2.462 1.144 3.244 -6.112 1.687 37.387 37 BB_G12C13:G31C32_BB B 12 ? B 32 ? B 13 ? B 31 ? 1 B C 13 1_555 B G 31 1_555 B U 14 1_555 B A 30 1_555 -0.575 -1.873 3.144 1.431 13.822 25.275 -6.293 1.419 1.854 28.963 -2.998 28.788 38 BB_C13U14:A30G31_BB B 13 ? B 31 ? B 14 ? B 30 ? 1 B U 14 1_555 B A 30 1_555 B C 15 1_555 B G 29 1_555 0.392 -1.012 3.500 -0.299 7.434 33.105 -2.973 -0.722 3.200 12.845 0.518 33.908 39 BB_U14C15:G29A30_BB B 14 ? B 30 ? B 15 ? B 29 ? 1 B C 15 1_555 B G 29 1_555 B G 16 1_555 B U 28 1_555 0.548 -1.896 3.406 -6.651 8.631 21.447 -7.089 -3.270 2.222 21.496 16.567 24.027 40 BB_C15G16:U28G29_BB B 15 ? B 29 ? B 16 ? B 28 ? 1 B G 16 1_555 B U 28 1_555 B U 17 1_555 B A 27 1_555 -0.501 -1.402 3.115 1.808 3.279 35.960 -2.689 1.044 2.953 5.294 -2.919 36.148 41 BB_G16U17:A27U28_BB B 16 ? B 28 ? B 17 ? B 27 ? 1 B U 17 1_555 B A 27 1_555 B U 18 1_555 B A 26 1_555 0.191 -1.770 2.797 -3.440 5.551 28.412 -4.489 -0.981 2.376 11.124 6.894 29.137 42 BB_U17U18:A26A27_BB B 17 ? B 27 ? B 18 ? B 26 ? 1 B A 20 1_555 B A 53 1_555 B U 21 1_555 B A 52 1_555 0.688 -0.352 3.256 -1.284 7.549 41.197 -1.268 -1.095 3.125 10.617 1.806 41.872 43 BB_A20U21:A52A53_BB B 20 ? B 53 ? B 21 ? B 52 ? 1 B G 24 1_555 B C 48 1_555 B G 25 1_555 B C 47 1_555 0.757 -1.198 3.158 8.006 9.773 30.894 -3.622 -0.064 2.768 17.458 -14.302 33.319 44 BB_G24G25:C47C48_BB B 24 ? B 48 ? B 25 ? B 47 ? 1 B G 25 1_555 B C 47 1_555 B U 54 1_555 B A 46 1_555 -2.463 -0.930 3.129 -6.140 12.157 49.407 -1.894 2.441 3.100 14.234 7.189 51.136 45 BB_G25U54:A46C47_BB B 25 ? B 47 ? B 54 ? B 46 ? 1 B U 54 1_555 B A 46 1_555 B U 55 1_555 B A 45 1_555 0.233 -2.409 3.520 -2.657 4.608 34.329 -4.760 -0.808 3.153 7.750 4.469 34.727 46 BB_U54U55:A45A46_BB B 54 ? B 46 ? B 55 ? B 45 ? 1 B U 55 1_555 B A 45 1_555 B G 56 1_555 B C 44 1_555 -0.597 -1.479 3.046 -0.461 3.495 29.478 -3.554 1.076 2.864 6.838 0.902 29.683 47 BB_U55G56:C44A45_BB B 55 ? B 45 ? B 56 ? B 44 ? 1 B G 56 1_555 B C 44 1_555 B C 57 1_555 B G 43 1_555 -1.031 -1.314 3.038 0.702 2.851 30.058 -3.047 2.107 2.880 5.480 -1.350 30.198 48 BB_G56C57:G43C44_BB B 56 ? B 44 ? B 57 ? B 43 ? 1 B C 57 1_555 B G 43 1_555 B C 58 1_555 B G 42 1_555 1.165 -1.206 3.404 -2.014 5.638 38.921 -2.463 -1.970 3.144 8.401 3.000 39.362 49 BB_C57C58:G42G43_BB B 57 ? B 43 ? B 58 ? B 42 ? 1 B C 58 1_555 B G 42 1_555 B C 59 1_555 B A 41 1_555 3.105 -1.073 0.257 -89.453 -141.853 -148.070 0.579 1.527 0.452 71.126 -44.852 -176.624 50 BB_C58C59:A41G42_BB B 58 ? B 42 ? B 59 ? B 41 ? 1 B C 59 1_555 B A 41 1_555 B A 61 1_555 B A 11 1_555 -2.823 2.484 0.080 -154.367 -83.746 34.924 1.478 0.980 1.261 -42.604 78.530 175.822 51 BB_C59A61:A11A41_BB B 59 ? B 41 ? B 61 ? B 11 ? 1 B A 61 1_555 B A 11 1_555 B G 62 1_555 B C 40 1_555 1.277 -1.049 2.962 -5.486 5.499 -18.723 0.469 1.123 3.364 -16.038 -16.000 -20.257 52 BB_A61G62:C40A11_BB B 61 ? B 11 ? B 62 ? B 40 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6UBU _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9LMC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.008373 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026512 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010582 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG MN N O P # loop_ # loop_ #