HEADER OXIDOREDUCTASE 20-JAN-25 9LN5 TITLE CRYSTAL STRUCTURE OF P450REVI A241L MUTANT IN COMPLEX WITH REVEROMYCIN TITLE 2 T COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REVEROMYCIN T HYDROXYLASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE INITIAL 'GSH' IS RESIDUAL AMINO ACID FROM THROMBIN COMPND 8 RECOGNITION SITE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. SN-593; SOURCE 3 ORGANISM_TAXID: 659352; SOURCE 4 GENE: REVI, RVR_8636; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYTOCHROME P450, HEME, REVEROMYCIN, BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUJIYAMA,Y.F.YONG,S.TAKAHASHI REVDAT 2 30-JUL-25 9LN5 1 JRNL REVDAT 1 02-JUL-25 9LN5 0 JRNL AUTH Y.F.YONG,S.LIU,K.SAKAI,K.FUJIYAMA,H.TAKAGI,Y.FUTAMURA, JRNL AUTH 2 T.SHIMIZU,H.OSADA,E.B.B.ONG,S.TAKAHASHI JRNL TITL BIOSYNTHESIS OF REVEROMYCIN DERIVATIVES BY ALTERING THE JRNL TITL 2 REGIOSELECTIVITY OF CYTOCHROME P450REVI. JRNL REF CHEM SCI V. 16 13106 2025 JRNL REFN ISSN 2041-6520 JRNL PMID 40556721 JRNL DOI 10.1039/D5SC01355K REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3472 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.370 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.025000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 30, 2023 REMARK 200 BUILT=20230630 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION JUN 30, 2023 REMARK 200 BUILT=20230630, POINTLESS REMARK 200 1.12.15, AIMLESS 0.7.13 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31933 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 42.707 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M SODIUM CITRATE, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS (PH 7.0), VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 232.24667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.12333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 174.18500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.06167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 290.30833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 232.24667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 116.12333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.06167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 174.18500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 290.30833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 720 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 THR A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 36 O HOH A 601 2.17 REMARK 500 OE1 GLU A 332 O HOH A 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 16 -170.87 -68.53 REMARK 500 GLU A 74 32.98 -91.80 REMARK 500 TYR A 145 -62.27 -154.13 REMARK 500 ASP A 210 65.64 -100.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 750 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 HEM A 501 NA 93.2 REMARK 620 3 HEM A 501 NB 88.9 86.2 REMARK 620 4 HEM A 501 NC 93.2 172.5 90.1 REMARK 620 5 HEM A 501 ND 97.1 92.6 174.0 90.4 REMARK 620 N 1 2 3 4 DBREF 9LN5 A 6 401 UNP G1UDU7 G1UDU7_9ACTN 2 397 SEQADV 9LN5 GLY A 1 UNP G1UDU7 EXPRESSION TAG SEQADV 9LN5 SER A 2 UNP G1UDU7 EXPRESSION TAG SEQADV 9LN5 HIS A 3 UNP G1UDU7 EXPRESSION TAG SEQADV 9LN5 MET A 4 UNP G1UDU7 EXPRESSION TAG SEQADV 9LN5 LEU A 5 UNP G1UDU7 EXPRESSION TAG SEQADV 9LN5 LEU A 241 UNP G1UDU7 ALA 237 ENGINEERED MUTATION SEQRES 1 A 401 GLY SER HIS MET LEU ASN THR THR TYR PRO GLU SER LEU SEQRES 2 A 401 SER TYR PRO PHE GLY PRO ASP GLU GLY LEU ALA LEU SER SEQRES 3 A 401 GLU SER TYR THR ARG ALA ARG ASP THR ASP GLY LEU ILE SEQRES 4 A 401 ARG VAL LYS LEU PRO TYR GLY GLU PRO ALA TRP LEU ALA SEQRES 5 A 401 THR ARG TYR GLU ASP ALA ARG LEU VAL LEU GLY ASP ALA SEQRES 6 A 401 ARG PHE SER ARG ALA LEU SER GLU GLU HIS ASP PRO PRO SEQRES 7 A 401 ARG ALA ARG LYS PHE ASN ALA GLN ALA LYS SER MET PHE SEQRES 8 A 401 ASN MET ASP ALA PRO ASP HIS THR ARG LEU ARG ARG LEU SEQRES 9 A 401 ILE SER LYS ALA PHE THR ILE ARG ARG VAL GLU GLU LEU SEQRES 10 A 401 ARG PRO LYS VAL HIS ASP LEU ALA HIS ARG LEU ILE ASP SEQRES 11 A 401 ASP MET LEU ALA LYS GLY GLU PRO ALA ASP LEU VAL ALA SEQRES 12 A 401 ASP TYR ALA LEU PRO ILE PRO THR THR VAL ILE CYS GLU SEQRES 13 A 401 LEU LEU GLY VAL PRO PHE GLU ASP ARG GLU LYS PHE GLY SEQRES 14 A 401 ARG TRP THR ASP ALA ILE LEU SER THR SER THR LEU ASN SEQRES 15 A 401 PRO GLU GLU GLY ARG VAL LYS ARG MET GLU LEU VAL GLY SEQRES 16 A 401 TYR ILE GLY GLY ILE ILE ALA ALA ARG ARG ALA GLN PRO SEQRES 17 A 401 ALA ASP ASP LEU ILE SER GLY MET ILE GLU ALA ARG ASP SEQRES 18 A 401 VAL GLN ASP LYS LEU THR GLU GLN GLU LEU LEU ASP HIS SEQRES 19 A 401 CYS ILE GLY LEU LEU ILE LEU GLY HIS GLU THR THR ALA SEQRES 20 A 401 SER GLN ILE PRO SER PHE VAL TYR ALA LEU LEU ASP GLN SEQRES 21 A 401 PRO GLN HIS TRP LYS ARG LEU LEU ASP ASP PRO GLU LEU SEQRES 22 A 401 ILE PRO SER ALA VAL GLU GLU LEU PHE ARG PHE VAL PRO SEQRES 23 A 401 LEU GLY SER GLY SER ALA ALA PRO ARG TYR ALA ARG GLU SEQRES 24 A 401 ASP ILE GLU VAL GLY GLY THR LEU VAL ARG ALA GLY GLU SEQRES 25 A 401 PRO VAL LEU VAL ALA LEU GLY ALA ALA ASN ARG ASP GLY SEQRES 26 A 401 LEU ARG PHE GLU ASP PRO GLU GLU ILE LYS LEU ASP ARG SEQRES 27 A 401 PRO SER ASN HIS HIS ILE GLY PHE GLY HIS GLY ILE HIS SEQRES 28 A 401 HIS CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU LEU GLN SEQRES 29 A 401 GLU ALA LEU ARG ALA LEU LEU GLU ARG LEU PRO THR LEU SEQRES 30 A 401 LYS VAL ALA GLY ASP ILE ALA TRP LYS SER GLU MET MET SEQRES 31 A 401 VAL ARG GLY PRO ARG SER MET PRO VAL GLY TRP HET HEM A 501 43 HET RRM A 502 85 HET CL A 503 1 HET CL A 504 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM RRM (2E,4S,5S,6E,8E)-10-{(2R,3S,6S,8R,9S)-9-BUTYL-8-[(1E, HETNAM 2 RRM 3E)-4-CARBOXY-3-METHYLBUTA-1,3-DIEN-1-YL]-3-METHYL-1, HETNAM 3 RRM 7-DIOXASPIRO[5.5]UNDEC-2-YL}-5-HYDROXY-4,8- HETNAM 4 RRM DIMETHYLDECA-2,6,8-TRIENOIC ACID HETNAM CL CHLORIDE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 RRM C32 H48 O7 FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *150(H2 O) HELIX 1 AA1 SER A 26 THR A 35 1 10 HELIX 2 AA2 ARG A 54 ASP A 64 1 11 HELIX 3 AA3 ARG A 69 HIS A 75 5 7 HELIX 4 AA4 SER A 89 MET A 93 5 5 HELIX 5 AA5 PRO A 96 SER A 106 1 11 HELIX 6 AA6 LYS A 107 PHE A 109 5 3 HELIX 7 AA7 THR A 110 GLU A 115 1 6 HELIX 8 AA8 LEU A 117 GLY A 136 1 20 HELIX 9 AA9 LEU A 147 GLY A 159 1 13 HELIX 10 AB1 PRO A 161 GLU A 163 5 3 HELIX 11 AB2 ASP A 164 SER A 177 1 14 HELIX 12 AB3 GLU A 184 GLN A 207 1 24 HELIX 13 AB4 ASP A 211 VAL A 222 1 12 HELIX 14 AB5 THR A 227 GLN A 260 1 34 HELIX 15 AB6 GLN A 260 ASP A 270 1 11 HELIX 16 AB7 LEU A 273 VAL A 285 1 13 HELIX 17 AB8 ALA A 317 ASN A 322 1 6 HELIX 18 AB9 GLY A 355 LEU A 374 1 20 SHEET 1 AA1 6 LEU A 13 SER A 14 0 SHEET 2 AA1 6 ILE A 39 LYS A 42 1 O LYS A 42 N LEU A 13 SHEET 3 AA1 6 ALA A 49 ALA A 52 -1 O LEU A 51 N ILE A 39 SHEET 4 AA1 6 PRO A 313 VAL A 316 1 O LEU A 315 N ALA A 52 SHEET 5 AA1 6 ALA A 292 ALA A 297 -1 N ALA A 292 O VAL A 316 SHEET 6 AA1 6 PHE A 67 SER A 68 -1 N SER A 68 O TYR A 296 SHEET 1 AA2 3 ALA A 139 ASP A 140 0 SHEET 2 AA2 3 PRO A 398 GLY A 400 -1 O VAL A 399 N ALA A 139 SHEET 3 AA2 3 LYS A 378 VAL A 379 -1 N LYS A 378 O GLY A 400 SHEET 1 AA3 2 ILE A 301 VAL A 303 0 SHEET 2 AA3 2 THR A 306 VAL A 308 -1 O THR A 306 N VAL A 303 SHEET 1 AA4 2 ALA A 384 TRP A 385 0 SHEET 2 AA4 2 PRO A 394 SER A 396 -1 O ARG A 395 N ALA A 384 LINK SG CYS A 353 FE HEM A 501 1555 1555 2.63 CISPEP 1 TYR A 15 PRO A 16 0 4.46 CISPEP 2 GLY A 18 PRO A 19 0 -4.13 CISPEP 3 ALA A 95 PRO A 96 0 -1.10 CISPEP 4 GLU A 137 PRO A 138 0 1.68 CRYST1 72.791 72.791 348.370 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013738 0.007932 0.000000 0.00000 SCALE2 0.000000 0.015863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002871 0.00000 CONECT 2773 3196 CONECT 3154 3158 3185 CONECT 3155 3161 3168 CONECT 3156 3171 3175 CONECT 3157 3178 3182 CONECT 3158 3154 3159 3192 CONECT 3159 3158 3160 3163 CONECT 3160 3159 3161 3162 CONECT 3161 3155 3160 3192 CONECT 3162 3160 CONECT 3163 3159 3164 CONECT 3164 3163 3165 CONECT 3165 3164 3166 3167 CONECT 3166 3165 CONECT 3167 3165 CONECT 3168 3155 3169 3193 CONECT 3169 3168 3170 3172 CONECT 3170 3169 3171 3173 CONECT 3171 3156 3170 3193 CONECT 3172 3169 CONECT 3173 3170 3174 CONECT 3174 3173 CONECT 3175 3156 3176 3194 CONECT 3176 3175 3177 3179 CONECT 3177 3176 3178 3180 CONECT 3178 3157 3177 3194 CONECT 3179 3176 CONECT 3180 3177 3181 CONECT 3181 3180 CONECT 3182 3157 3183 3195 CONECT 3183 3182 3184 3186 CONECT 3184 3183 3185 3187 CONECT 3185 3154 3184 3195 CONECT 3186 3183 CONECT 3187 3184 3188 CONECT 3188 3187 3189 CONECT 3189 3188 3190 3191 CONECT 3190 3189 CONECT 3191 3189 CONECT 3192 3158 3161 3196 CONECT 3193 3168 3171 3196 CONECT 3194 3175 3178 3196 CONECT 3195 3182 3185 3196 CONECT 3196 2773 3192 3193 3194 CONECT 3196 3195 CONECT 3197 3198 CONECT 3198 3197 3199 3200 CONECT 3199 3198 CONECT 3200 3198 3201 3236 CONECT 3201 3200 3202 3203 CONECT 3202 3201 3237 3238 3239 CONECT 3203 3201 3204 3240 CONECT 3204 3203 3205 3241 CONECT 3205 3204 3206 3207 3242 CONECT 3206 3205 3214 CONECT 3207 3205 3208 3212 3243 CONECT 3208 3207 3209 3244 3245 CONECT 3209 3208 3210 3246 3247 CONECT 3210 3209 3211 3248 3249 CONECT 3211 3210 3250 3251 3252 CONECT 3212 3207 3213 3253 3254 CONECT 3213 3212 3214 3255 3256 CONECT 3214 3206 3213 3215 3216 CONECT 3215 3214 3220 CONECT 3216 3214 3217 3257 3258 CONECT 3217 3216 3218 3259 3260 CONECT 3218 3217 3219 3220 3261 CONECT 3219 3218 3262 3263 3264 CONECT 3220 3215 3218 3221 3265 CONECT 3221 3220 3222 3266 3267 CONECT 3222 3221 3223 3268 CONECT 3223 3222 3224 3225 CONECT 3224 3223 3269 3270 3271 CONECT 3225 3223 3226 3272 CONECT 3226 3225 3227 3273 CONECT 3227 3226 3228 3229 3274 CONECT 3228 3227 3275 CONECT 3229 3227 3230 3231 3276 CONECT 3230 3229 3277 3278 3279 CONECT 3231 3229 3232 3280 CONECT 3232 3231 3233 3281 CONECT 3233 3232 3234 3235 CONECT 3234 3233 CONECT 3235 3233 CONECT 3236 3200 CONECT 3237 3202 CONECT 3238 3202 CONECT 3239 3202 CONECT 3240 3203 CONECT 3241 3204 CONECT 3242 3205 CONECT 3243 3207 CONECT 3244 3208 CONECT 3245 3208 CONECT 3246 3209 CONECT 3247 3209 CONECT 3248 3210 CONECT 3249 3210 CONECT 3250 3211 CONECT 3251 3211 CONECT 3252 3211 CONECT 3253 3212 CONECT 3254 3212 CONECT 3255 3213 CONECT 3256 3213 CONECT 3257 3216 CONECT 3258 3216 CONECT 3259 3217 CONECT 3260 3217 CONECT 3261 3218 CONECT 3262 3219 CONECT 3263 3219 CONECT 3264 3219 CONECT 3265 3220 CONECT 3266 3221 CONECT 3267 3221 CONECT 3268 3222 CONECT 3269 3224 CONECT 3270 3224 CONECT 3271 3224 CONECT 3272 3225 CONECT 3273 3226 CONECT 3274 3227 CONECT 3275 3228 CONECT 3276 3229 CONECT 3277 3230 CONECT 3278 3230 CONECT 3279 3230 CONECT 3280 3231 CONECT 3281 3232 MASTER 354 0 4 18 13 0 0 6 3334 1 130 31 END