HEADER HORMONE 09-FEB-25 9LUO TITLE CRYO-EM STRUCTURE OF ARABIDOPSIS THALIANA RGA IN COMPLEX WITH GID1A, TITLE 2 SLY1, AND ASK2 (FOCUSED MAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELLA PROTEIN RGA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAI-RELATED SEQUENCE,GRAS FAMILY PROTEIN 10,ATGRAS-10, COMPND 5 REPRESSOR ON THE GA1-3 MUTANT,RESTORATION OF GROWTH ON AMMONIA COMPND 6 PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: F-BOX PROTEIN GID2; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: PROTEIN SLEEPY 1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SKP1-LIKE PROTEIN 1B; COMPND 15 CHAIN: D; COMPND 16 SYNONYM: SKP1-LIKE 2,UFO-BINDING PROTEIN 2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RGA, GRS, RGA1, AT2G01570, F2I9.19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: GID2, SLY1, AT4G24210, T22A6.40; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 17 ORGANISM_COMMON: THALE CRESS; SOURCE 18 ORGANISM_TAXID: 3702; SOURCE 19 GENE: SKP1B, ASK2, UIP2, AT5G42190, MJC20.30; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GIBBERELLIN, DELLA MOTIF, GRAS DOMAIN, PLANT GROWTH, HORMONE EXPDTA ELECTRON MICROSCOPY AUTHOR S.ISLAM,K.PARK,E.KWON,D.Y.KIM REVDAT 3 23-JUL-25 9LUO 1 JRNL REVDAT 2 16-JUL-25 9LUO 1 JRNL REVDAT 1 09-JUL-25 9LUO 0 JRNL AUTH S.ISLAM,K.PARK,J.XIA,E.KWON,D.Y.KIM JRNL TITL STRUCTURAL INSIGHTS INTO GIBBERELLIN-MEDIATED DELLA PROTEIN JRNL TITL 2 DEGRADATION. JRNL REF MOL PLANT V. 18 1210 2025 JRNL REFN ESSN 1752-9867 JRNL PMID 40542507 JRNL DOI 10.1016/J.MOLP.2025.06.010 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.070 REMARK 3 NUMBER OF PARTICLES : 65737 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9LUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300053362. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PARTIAL MODEL OF REMARK 245 RGA/GID1A/SLY/ASK2 REMARK 245 HETEROTETRAMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : PARTIAL MODEL OF REMARK 245 RGA/GID1A/SLY/ASK2 HETEROTETRAMER REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2700.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 GLN A 7 REMARK 465 PHE A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 ASN A 14 REMARK 465 HIS A 15 REMARK 465 GLY A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 ILE A 24 REMARK 465 SER A 25 REMARK 465 LYS A 26 REMARK 465 ASP A 27 REMARK 465 LYS A 28 REMARK 465 MET A 29 REMARK 465 MET A 30 REMARK 465 MET A 31 REMARK 465 VAL A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 GLU A 35 REMARK 465 GLU A 36 REMARK 465 ASP A 37 REMARK 465 GLY A 38 REMARK 465 GLY A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 MET A 42 REMARK 465 ASP A 43 REMARK 465 ASP A 44 REMARK 465 GLU A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 ALA A 48 REMARK 465 VAL A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 TYR A 52 REMARK 465 LYS A 53 REMARK 465 VAL A 54 REMARK 465 ARG A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 GLU A 58 REMARK 465 MET A 59 REMARK 465 ALA A 60 REMARK 465 GLU A 61 REMARK 465 VAL A 62 REMARK 465 ALA A 63 REMARK 465 LEU A 64 REMARK 465 LYS A 65 REMARK 465 LEU A 66 REMARK 465 GLU A 67 REMARK 465 GLN A 68 REMARK 465 LEU A 69 REMARK 465 GLU A 70 REMARK 465 THR A 71 REMARK 465 MET A 72 REMARK 465 MET A 73 REMARK 465 SER A 74 REMARK 465 ASN A 75 REMARK 465 VAL A 76 REMARK 465 GLN A 77 REMARK 465 GLU A 78 REMARK 465 ASP A 79 REMARK 465 GLY A 80 REMARK 465 LEU A 81 REMARK 465 SER A 82 REMARK 465 HIS A 83 REMARK 465 LEU A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 ASP A 87 REMARK 465 THR A 88 REMARK 465 VAL A 89 REMARK 465 HIS A 90 REMARK 465 TYR A 91 REMARK 465 ASN A 92 REMARK 465 PRO A 93 REMARK 465 SER A 94 REMARK 465 GLU A 95 REMARK 465 LEU A 96 REMARK 465 TYR A 97 REMARK 465 SER A 98 REMARK 465 TRP A 99 REMARK 465 LEU A 100 REMARK 465 ASP A 101 REMARK 465 ASN A 102 REMARK 465 MET A 103 REMARK 465 LEU A 104 REMARK 465 SER A 105 REMARK 465 GLU A 106 REMARK 465 LEU A 107 REMARK 465 ASN A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 110 REMARK 465 PRO A 111 REMARK 465 LEU A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 ASN A 117 REMARK 465 GLY A 118 REMARK 465 LEU A 119 REMARK 465 ASP A 120 REMARK 465 PRO A 121 REMARK 465 VAL A 122 REMARK 465 LEU A 123 REMARK 465 PRO A 124 REMARK 465 SER A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 ILE A 128 REMARK 465 CYS A 129 REMARK 465 GLY A 130 REMARK 465 PHE A 131 REMARK 465 PRO A 132 REMARK 465 ALA A 133 REMARK 465 SER A 134 REMARK 465 ASP A 135 REMARK 465 TYR A 136 REMARK 465 ASP A 137 REMARK 465 LEU A 138 REMARK 465 LYS A 139 REMARK 465 VAL A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 GLY A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ILE A 146 REMARK 465 TYR A 147 REMARK 465 GLN A 148 REMARK 465 PHE A 149 REMARK 465 PRO A 150 REMARK 465 ALA A 151 REMARK 465 ILE A 152 REMARK 465 ASP A 153 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 SER A 158 REMARK 465 ASN A 159 REMARK 465 ASN A 160 REMARK 465 GLN A 161 REMARK 465 ASN A 162 REMARK 465 LYS A 163 REMARK 465 ARG A 164 REMARK 465 LEU A 165 REMARK 465 LYS A 166 REMARK 465 SER A 167 REMARK 465 CYS A 168 REMARK 465 SER A 169 REMARK 465 SER A 170 REMARK 465 PRO A 171 REMARK 465 ASP A 172 REMARK 465 SER A 173 REMARK 465 MET A 174 REMARK 465 VAL A 175 REMARK 465 THR A 176 REMARK 465 SER A 177 REMARK 465 THR A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 GLN A 183 REMARK 465 ILE A 184 REMARK 465 GLY A 185 REMARK 465 GLY A 186 REMARK 465 VAL A 187 REMARK 465 ILE A 188 REMARK 465 GLY A 189 REMARK 465 THR A 190 REMARK 465 THR A 191 REMARK 465 VAL A 192 REMARK 465 THR A 193 REMARK 465 THR A 194 REMARK 465 THR A 195 REMARK 465 THR A 196 REMARK 465 THR A 197 REMARK 465 THR A 198 REMARK 465 THR A 199 REMARK 465 THR A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 GLY A 203 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 THR A 206 REMARK 465 ARG A 207 REMARK 465 SER A 208 REMARK 465 VAL A 209 REMARK 465 ILE A 210 REMARK 465 LEU A 211 REMARK 465 VAL A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 GLN A 215 REMARK 465 GLU A 216 REMARK 465 ASN A 217 REMARK 465 GLY A 218 REMARK 465 VAL A 219 REMARK 465 ARG A 220 REMARK 465 LEU A 221 REMARK 465 VAL A 222 REMARK 465 HIS A 223 REMARK 465 ALA A 224 REMARK 465 LEU A 225 REMARK 465 MET A 226 REMARK 465 ALA A 227 REMARK 465 CYS A 228 REMARK 465 ALA A 229 REMARK 465 GLU A 230 REMARK 465 ALA A 231 REMARK 465 ILE A 232 REMARK 465 GLN A 233 REMARK 465 GLN A 234 REMARK 465 ASN A 235 REMARK 465 ASN A 236 REMARK 465 LEU A 237 REMARK 465 THR A 238 REMARK 465 LEU A 239 REMARK 465 ALA A 240 REMARK 465 GLU A 241 REMARK 465 ALA A 242 REMARK 465 LEU A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 GLN A 246 REMARK 465 ILE A 247 REMARK 465 GLY A 248 REMARK 465 CYS A 249 REMARK 465 LEU A 250 REMARK 465 ALA A 251 REMARK 465 VAL A 252 REMARK 465 SER A 253 REMARK 465 GLN A 254 REMARK 465 ALA A 255 REMARK 465 GLY A 256 REMARK 465 ALA A 257 REMARK 465 MET A 258 REMARK 465 ARG A 259 REMARK 465 LYS A 260 REMARK 465 VAL A 261 REMARK 465 ALA A 262 REMARK 465 THR A 263 REMARK 465 TYR A 264 REMARK 465 PHE A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 ALA A 270 REMARK 465 ARG A 271 REMARK 465 ARG A 272 REMARK 465 ILE A 273 REMARK 465 TYR A 274 REMARK 465 ARG A 275 REMARK 465 LEU A 276 REMARK 465 SER A 277 REMARK 465 PRO A 278 REMARK 465 PRO A 279 REMARK 465 GLN A 280 REMARK 465 ASN A 281 REMARK 465 GLN A 282 REMARK 465 ILE A 283 REMARK 465 ASP A 284 REMARK 465 HIS A 285 REMARK 465 CYS A 286 REMARK 465 LEU A 287 REMARK 465 SER A 288 REMARK 465 ASP A 289 REMARK 465 THR A 290 REMARK 465 LEU A 291 REMARK 465 GLN A 292 REMARK 465 MET A 293 REMARK 465 HIS A 294 REMARK 465 PHE A 295 REMARK 465 TYR A 296 REMARK 465 GLU A 297 REMARK 465 THR A 298 REMARK 465 CYS A 299 REMARK 465 PHE A 317 REMARK 465 GLU A 318 REMARK 465 GLY A 319 REMARK 465 LYS A 320 REMARK 465 LYS A 321 REMARK 465 ARG A 322 REMARK 465 VAL A 323 REMARK 465 HIS A 324 REMARK 465 VAL A 325 REMARK 465 ILE A 326 REMARK 465 ASP A 327 REMARK 465 PHE A 328 REMARK 465 PRO A 351 REMARK 465 THR A 352 REMARK 465 PHE A 353 REMARK 465 ARG A 354 REMARK 465 LEU A 355 REMARK 465 THR A 356 REMARK 465 GLY A 357 REMARK 465 ILE A 358 REMARK 465 GLY A 359 REMARK 465 PRO A 360 REMARK 465 PRO A 361 REMARK 465 ALA A 362 REMARK 465 PRO A 363 REMARK 465 ASP A 364 REMARK 465 ASN A 365 REMARK 465 SER A 366 REMARK 465 ASP A 367 REMARK 465 PHE A 387 REMARK 465 GLU A 388 REMARK 465 TYR A 389 REMARK 465 ARG A 390 REMARK 465 GLY A 391 REMARK 465 PHE A 392 REMARK 465 VAL A 393 REMARK 465 ALA A 394 REMARK 465 ASN A 395 REMARK 465 SER A 396 REMARK 465 LEU A 397 REMARK 465 ALA A 398 REMARK 465 ASP A 399 REMARK 465 LEU A 400 REMARK 465 ASP A 401 REMARK 465 ALA A 402 REMARK 465 SER A 403 REMARK 465 MET A 404 REMARK 465 LEU A 405 REMARK 465 GLU A 406 REMARK 465 LEU A 407 REMARK 465 ARG A 408 REMARK 465 PRO A 409 REMARK 465 SER A 410 REMARK 465 ASP A 411 REMARK 465 THR A 412 REMARK 465 GLU A 413 REMARK 465 ALA A 414 REMARK 465 VAL A 415 REMARK 465 ALA A 416 REMARK 465 VAL A 417 REMARK 465 ASN A 418 REMARK 465 SER A 419 REMARK 465 VAL A 420 REMARK 465 PHE A 421 REMARK 465 GLU A 422 REMARK 465 LEU A 423 REMARK 465 HIS A 424 REMARK 465 LYS A 425 REMARK 465 LEU A 426 REMARK 465 LEU A 427 REMARK 465 GLY A 428 REMARK 465 ARG A 429 REMARK 465 PRO A 430 REMARK 465 GLY A 431 REMARK 465 GLY A 432 REMARK 465 ILE A 433 REMARK 465 GLU A 434 REMARK 465 LYS A 435 REMARK 465 VAL A 436 REMARK 465 LEU A 437 REMARK 465 GLY A 438 REMARK 465 VAL A 439 REMARK 465 VAL A 440 REMARK 465 LYS A 441 REMARK 465 GLN A 442 REMARK 465 ILE A 443 REMARK 465 LYS A 444 REMARK 465 PRO A 445 REMARK 465 VAL A 446 REMARK 465 ILE A 447 REMARK 465 PHE A 448 REMARK 465 THR A 449 REMARK 465 VAL A 450 REMARK 465 VAL A 451 REMARK 465 GLU A 452 REMARK 465 GLN A 453 REMARK 465 GLU A 454 REMARK 465 SER A 455 REMARK 465 ASN A 456 REMARK 465 HIS A 457 REMARK 465 ASN A 458 REMARK 465 GLY A 459 REMARK 465 PRO A 460 REMARK 465 VAL A 461 REMARK 465 PHE A 462 REMARK 465 LEU A 463 REMARK 465 ASP A 464 REMARK 465 ARG A 465 REMARK 465 PHE A 466 REMARK 465 THR A 467 REMARK 465 GLU A 468 REMARK 465 SER A 469 REMARK 465 LEU A 470 REMARK 465 HIS A 471 REMARK 465 TYR A 472 REMARK 465 TYR A 473 REMARK 465 SER A 474 REMARK 465 THR A 475 REMARK 465 LEU A 476 REMARK 465 PHE A 477 REMARK 465 ASP A 478 REMARK 465 SER A 479 REMARK 465 LEU A 480 REMARK 465 GLU A 481 REMARK 465 GLY A 482 REMARK 465 VAL A 483 REMARK 465 PRO A 484 REMARK 465 ASN A 485 REMARK 465 SER A 486 REMARK 465 GLN A 487 REMARK 465 ASP A 488 REMARK 465 LYS A 489 REMARK 465 VAL A 490 REMARK 465 MET A 491 REMARK 465 SER A 492 REMARK 465 GLU A 493 REMARK 465 VAL A 494 REMARK 465 TYR A 495 REMARK 465 LEU A 496 REMARK 465 GLY A 497 REMARK 465 LYS A 498 REMARK 465 GLN A 499 REMARK 465 ILE A 500 REMARK 465 CYS A 501 REMARK 465 ASN A 502 REMARK 465 LEU A 503 REMARK 465 VAL A 504 REMARK 465 ALA A 505 REMARK 465 CYS A 506 REMARK 465 GLU A 507 REMARK 465 GLY A 508 REMARK 465 PRO A 509 REMARK 465 ASP A 510 REMARK 465 ARG A 511 REMARK 465 VAL A 512 REMARK 465 GLU A 513 REMARK 465 ARG A 514 REMARK 465 HIS A 515 REMARK 465 GLU A 516 REMARK 465 THR A 517 REMARK 465 LEU A 518 REMARK 465 SER A 519 REMARK 465 GLN A 520 REMARK 465 TRP A 521 REMARK 465 GLY A 522 REMARK 465 ASN A 523 REMARK 465 ARG A 524 REMARK 465 PHE A 525 REMARK 465 GLY A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 GLY A 529 REMARK 465 LEU A 530 REMARK 465 ALA A 531 REMARK 465 PRO A 532 REMARK 465 ALA A 533 REMARK 465 HIS A 534 REMARK 465 LEU A 535 REMARK 465 SER A 548 REMARK 465 VAL A 549 REMARK 465 PHE A 550 REMARK 465 ASN A 551 REMARK 465 SER A 552 REMARK 465 GLY A 553 REMARK 465 GLN A 554 REMARK 465 GLY A 555 REMARK 465 TYR A 556 REMARK 465 ARG A 557 REMARK 465 VAL A 558 REMARK 465 GLU A 559 REMARK 465 GLU A 560 REMARK 465 SER A 561 REMARK 465 ASN A 562 REMARK 465 GLY A 563 REMARK 465 CYS A 564 REMARK 465 LEU A 565 REMARK 465 MET A 566 REMARK 465 LEU A 567 REMARK 465 GLY A 568 REMARK 465 TRP A 569 REMARK 465 HIS A 570 REMARK 465 THR A 571 REMARK 465 ARG A 572 REMARK 465 PRO A 573 REMARK 465 LEU A 574 REMARK 465 ILE A 575 REMARK 465 THR A 576 REMARK 465 THR A 577 REMARK 465 SER A 578 REMARK 465 ALA A 579 REMARK 465 TRP A 580 REMARK 465 LYS A 581 REMARK 465 LEU A 582 REMARK 465 SER A 583 REMARK 465 THR A 584 REMARK 465 ALA A 585 REMARK 465 ALA A 586 REMARK 465 TYR A 587 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ARG C 3 REMARK 465 SER C 4 REMARK 465 THR C 5 REMARK 465 THR C 6 REMARK 465 ASP C 7 REMARK 465 SER C 8 REMARK 465 ASP C 9 REMARK 465 LEU C 10 REMARK 465 ALA C 11 REMARK 465 GLY C 12 REMARK 465 ASP C 13 REMARK 465 ALA C 14 REMARK 465 HIS C 15 REMARK 465 ASN C 16 REMARK 465 GLU C 17 REMARK 465 THR C 18 REMARK 465 ASN C 19 REMARK 465 LYS C 20 REMARK 465 LYS C 21 REMARK 465 MET C 22 REMARK 465 LYS C 23 REMARK 465 SER C 24 REMARK 465 THR C 25 REMARK 465 GLU C 26 REMARK 465 GLU C 27 REMARK 465 GLU C 28 REMARK 465 GLU C 29 REMARK 465 ILE C 30 REMARK 465 PHE C 142 REMARK 465 THR C 143 REMARK 465 LYS C 144 REMARK 465 ARG C 145 REMARK 465 PRO C 146 REMARK 465 LEU C 147 REMARK 465 PRO C 148 REMARK 465 GLU C 149 REMARK 465 SER C 150 REMARK 465 LYS C 151 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 VAL D 4 REMARK 465 ARG D 5 REMARK 465 ILE D 34 REMARK 465 GLU D 35 REMARK 465 ASP D 36 REMARK 465 ASP D 37 REMARK 465 CYS D 38 REMARK 465 THR D 39 REMARK 465 ASP D 40 REMARK 465 ASN D 41 REMARK 465 GLY D 42 REMARK 465 LYS D 69 REMARK 465 SER D 70 REMARK 465 GLU D 71 REMARK 465 THR D 72 REMARK 465 THR D 73 REMARK 465 ALA D 74 REMARK 465 ASP D 75 REMARK 465 ALA D 76 REMARK 465 ALA D 77 REMARK 465 ALA D 78 REMARK 465 ALA D 79 REMARK 465 THR D 80 REMARK 465 THR D 81 REMARK 465 THR D 82 REMARK 465 THR D 83 REMARK 465 THR D 84 REMARK 465 VAL D 85 REMARK 465 ALA D 86 REMARK 465 SER D 87 REMARK 465 GLU D 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 114 CG PRO C 114 CD -0.461 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 114 N - CA - CB ANGL. DEV. = -7.5 DEGREES REMARK 500 PRO C 114 CA - CB - CG ANGL. DEV. = -33.5 DEGREES REMARK 500 PRO C 114 N - CD - CG ANGL. DEV. = -30.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 330 18.60 -141.53 REMARK 500 GLN A 332 -6.76 67.35 REMARK 500 TRP C 80 -61.85 -93.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-63400 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ARABIDOPSIS THALIANA RGA IN COMPLEX WITH GID1A, REMARK 900 SLY1, AND ASK2 (FOCUSED MAP) DBREF 9LUO A 1 587 UNP Q9SLH3 RGA_ARATH 1 587 DBREF 9LUO C 1 151 UNP Q9STX3 GID2_ARATH 1 151 DBREF 9LUO D 1 171 UNP Q9FHW7 SKP1B_ARATH 1 171 SEQADV 9LUO GLY C -1 UNP Q9STX3 EXPRESSION TAG SEQADV 9LUO SER C 0 UNP Q9STX3 EXPRESSION TAG SEQADV 9LUO GLY D -1 UNP Q9FHW7 EXPRESSION TAG SEQADV 9LUO SER D 0 UNP Q9FHW7 EXPRESSION TAG SEQRES 1 A 587 MET LYS ARG ASP HIS HIS GLN PHE GLN GLY ARG LEU SER SEQRES 2 A 587 ASN HIS GLY THR SER SER SER SER SER SER ILE SER LYS SEQRES 3 A 587 ASP LYS MET MET MET VAL LYS LYS GLU GLU ASP GLY GLY SEQRES 4 A 587 GLY ASN MET ASP ASP GLU LEU LEU ALA VAL LEU GLY TYR SEQRES 5 A 587 LYS VAL ARG SER SER GLU MET ALA GLU VAL ALA LEU LYS SEQRES 6 A 587 LEU GLU GLN LEU GLU THR MET MET SER ASN VAL GLN GLU SEQRES 7 A 587 ASP GLY LEU SER HIS LEU ALA THR ASP THR VAL HIS TYR SEQRES 8 A 587 ASN PRO SER GLU LEU TYR SER TRP LEU ASP ASN MET LEU SEQRES 9 A 587 SER GLU LEU ASN PRO PRO PRO LEU PRO ALA SER SER ASN SEQRES 10 A 587 GLY LEU ASP PRO VAL LEU PRO SER PRO GLU ILE CYS GLY SEQRES 11 A 587 PHE PRO ALA SER ASP TYR ASP LEU LYS VAL ILE PRO GLY SEQRES 12 A 587 ASN ALA ILE TYR GLN PHE PRO ALA ILE ASP SER SER SER SEQRES 13 A 587 SER SER ASN ASN GLN ASN LYS ARG LEU LYS SER CYS SER SEQRES 14 A 587 SER PRO ASP SER MET VAL THR SER THR SER THR GLY THR SEQRES 15 A 587 GLN ILE GLY GLY VAL ILE GLY THR THR VAL THR THR THR SEQRES 16 A 587 THR THR THR THR THR ALA ALA GLY GLU SER THR ARG SER SEQRES 17 A 587 VAL ILE LEU VAL ASP SER GLN GLU ASN GLY VAL ARG LEU SEQRES 18 A 587 VAL HIS ALA LEU MET ALA CYS ALA GLU ALA ILE GLN GLN SEQRES 19 A 587 ASN ASN LEU THR LEU ALA GLU ALA LEU VAL LYS GLN ILE SEQRES 20 A 587 GLY CYS LEU ALA VAL SER GLN ALA GLY ALA MET ARG LYS SEQRES 21 A 587 VAL ALA THR TYR PHE ALA GLU ALA LEU ALA ARG ARG ILE SEQRES 22 A 587 TYR ARG LEU SER PRO PRO GLN ASN GLN ILE ASP HIS CYS SEQRES 23 A 587 LEU SER ASP THR LEU GLN MET HIS PHE TYR GLU THR CYS SEQRES 24 A 587 PRO TYR LEU LYS PHE ALA HIS PHE THR ALA ASN GLN ALA SEQRES 25 A 587 ILE LEU GLU ALA PHE GLU GLY LYS LYS ARG VAL HIS VAL SEQRES 26 A 587 ILE ASP PHE SER MET ASN GLN GLY LEU GLN TRP PRO ALA SEQRES 27 A 587 LEU MET GLN ALA LEU ALA LEU ARG GLU GLY GLY PRO PRO SEQRES 28 A 587 THR PHE ARG LEU THR GLY ILE GLY PRO PRO ALA PRO ASP SEQRES 29 A 587 ASN SER ASP HIS LEU HIS GLU VAL GLY CYS LYS LEU ALA SEQRES 30 A 587 GLN LEU ALA GLU ALA ILE HIS VAL GLU PHE GLU TYR ARG SEQRES 31 A 587 GLY PHE VAL ALA ASN SER LEU ALA ASP LEU ASP ALA SER SEQRES 32 A 587 MET LEU GLU LEU ARG PRO SER ASP THR GLU ALA VAL ALA SEQRES 33 A 587 VAL ASN SER VAL PHE GLU LEU HIS LYS LEU LEU GLY ARG SEQRES 34 A 587 PRO GLY GLY ILE GLU LYS VAL LEU GLY VAL VAL LYS GLN SEQRES 35 A 587 ILE LYS PRO VAL ILE PHE THR VAL VAL GLU GLN GLU SER SEQRES 36 A 587 ASN HIS ASN GLY PRO VAL PHE LEU ASP ARG PHE THR GLU SEQRES 37 A 587 SER LEU HIS TYR TYR SER THR LEU PHE ASP SER LEU GLU SEQRES 38 A 587 GLY VAL PRO ASN SER GLN ASP LYS VAL MET SER GLU VAL SEQRES 39 A 587 TYR LEU GLY LYS GLN ILE CYS ASN LEU VAL ALA CYS GLU SEQRES 40 A 587 GLY PRO ASP ARG VAL GLU ARG HIS GLU THR LEU SER GLN SEQRES 41 A 587 TRP GLY ASN ARG PHE GLY SER SER GLY LEU ALA PRO ALA SEQRES 42 A 587 HIS LEU GLY SER ASN ALA PHE LYS GLN ALA SER MET LEU SEQRES 43 A 587 LEU SER VAL PHE ASN SER GLY GLN GLY TYR ARG VAL GLU SEQRES 44 A 587 GLU SER ASN GLY CYS LEU MET LEU GLY TRP HIS THR ARG SEQRES 45 A 587 PRO LEU ILE THR THR SER ALA TRP LYS LEU SER THR ALA SEQRES 46 A 587 ALA TYR SEQRES 1 C 153 GLY SER MET LYS ARG SER THR THR ASP SER ASP LEU ALA SEQRES 2 C 153 GLY ASP ALA HIS ASN GLU THR ASN LYS LYS MET LYS SER SEQRES 3 C 153 THR GLU GLU GLU GLU ILE GLY PHE SER ASN LEU ASP GLU SEQRES 4 C 153 ASN LEU VAL TYR GLU VAL LEU LYS HIS VAL ASP ALA LYS SEQRES 5 C 153 THR LEU ALA MET SER SER CYS VAL SER LYS ILE TRP HIS SEQRES 6 C 153 LYS THR ALA GLN ASP GLU ARG LEU TRP GLU LEU ILE CYS SEQRES 7 C 153 THR ARG HIS TRP THR ASN ILE GLY CYS GLY GLN ASN GLN SEQRES 8 C 153 LEU ARG SER VAL VAL LEU ALA LEU GLY GLY PHE ARG ARG SEQRES 9 C 153 LEU HIS SER LEU TYR LEU TRP PRO LEU SER LYS PRO ASN SEQRES 10 C 153 PRO ARG ALA ARG PHE GLY LYS ASP GLU LEU LYS LEU THR SEQRES 11 C 153 LEU SER LEU LEU SER ILE ARG TYR TYR GLU LYS MET SER SEQRES 12 C 153 PHE THR LYS ARG PRO LEU PRO GLU SER LYS SEQRES 1 D 173 GLY SER MET SER THR VAL ARG LYS ILE THR LEU LYS SER SEQRES 2 D 173 SER ASP GLY GLU ASN PHE GLU ILE ASP GLU ALA VAL ALA SEQRES 3 D 173 LEU GLU SER GLN THR ILE LYS HIS MET ILE GLU ASP ASP SEQRES 4 D 173 CYS THR ASP ASN GLY ILE PRO LEU PRO ASN VAL THR SER SEQRES 5 D 173 LYS ILE LEU SER LYS VAL ILE GLU TYR CYS LYS ARG HIS SEQRES 6 D 173 VAL GLU ALA ALA GLU LYS SER GLU THR THR ALA ASP ALA SEQRES 7 D 173 ALA ALA ALA THR THR THR THR THR VAL ALA SER GLY SER SEQRES 8 D 173 SER ASP GLU ASP LEU LYS THR TRP ASP SER GLU PHE ILE SEQRES 9 D 173 LYS VAL ASP GLN GLY THR LEU PHE ASP LEU ILE LEU ALA SEQRES 10 D 173 ALA ASN TYR LEU ASN ILE LYS GLY LEU LEU ASP LEU THR SEQRES 11 D 173 CYS GLN THR VAL ALA ASP MET ILE LYS GLY LYS THR PRO SEQRES 12 D 173 GLU GLU ILE ARG LYS THR PHE ASN ILE LYS ASN ASP PHE SEQRES 13 D 173 THR PRO GLU GLU GLU GLU GLU VAL ARG ARG GLU ASN GLN SEQRES 14 D 173 TRP ALA PHE GLU HELIX 1 AA1 PRO A 300 ALA A 316 1 17 HELIX 2 AA2 MET A 330 LEU A 334 5 5 HELIX 3 AA3 GLN A 335 LEU A 345 1 11 HELIX 4 AA4 LEU A 369 ILE A 383 1 15 HELIX 5 AA5 SER A 537 LEU A 547 1 11 HELIX 6 AA6 GLY C 31 LEU C 35 5 5 HELIX 7 AA7 ASP C 36 LYS C 45 1 10 HELIX 8 AA8 ASP C 48 SER C 56 1 9 HELIX 9 AA9 SER C 59 GLN C 67 1 9 HELIX 10 AB1 ASP C 68 HIS C 79 1 12 HELIX 11 AB2 GLY C 86 LEU C 97 1 12 HELIX 12 AB3 GLY C 99 TYR C 107 1 9 HELIX 13 AB4 TYR C 107 LYS C 113 1 7 HELIX 14 AB5 LYS C 122 SER C 141 1 20 HELIX 15 AB6 ASP D 20 LEU D 25 1 6 HELIX 16 AB7 SER D 27 MET D 33 1 7 HELIX 17 AB8 THR D 49 GLU D 68 1 20 HELIX 18 AB9 SER D 89 LYS D 103 1 15 HELIX 19 AC1 ASP D 105 ASN D 120 1 16 HELIX 20 AC2 ILE D 121 LYS D 137 1 17 HELIX 21 AC3 THR D 140 PHE D 148 1 9 HELIX 22 AC4 THR D 155 ASN D 166 1 12 SHEET 1 AA1 2 ILE D 7 LYS D 10 0 SHEET 2 AA1 2 ASN D 16 ILE D 19 -1 O PHE D 17 N LEU D 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 535 LEU A 547 TER 1443 SER C 141 TER 2543 PHE D 170 MASTER 764 0 0 22 2 0 0 6 2540 3 0 72 END