HEADER PLANT PROTEIN 10-FEB-25 9LUZ TITLE CAROTENOID CLEAVAGE DIOXYGENASE 1 FROM OSMANTHUS FRAGRANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAROTENOID 9,10-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSMANTHUS FRAGRANS; SOURCE 3 ORGANISM_TAXID: 93977; SOURCE 4 GENE: CCD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOSYNTHESIS OF IONONE, CCD1, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SHARMA,B.XUE REVDAT 1 11-FEB-26 9LUZ 0 SPRSDE 11-FEB-26 9LUZ 7VUD JRNL AUTH D.SHARMA,B.XUE,E.ESQUE,S.BOZONNET,J.S.ONG,W.S.YEW, JRNL AUTH 2 M.REMAUD-SIMEON,I.ANDRE,X.CHEN JRNL TITL STRUCTURE-BASED ENZYME ENGINEERING OF CCD1 TO IMPROVE JRNL TITL 2 SUBSTRATE SPECIFICITY FOR BETA-IONONE BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.455 REMARK 3 FREE R VALUE TEST SET COUNT : 3143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5100 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4469 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4124 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6050 ; 1.447 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9614 ; 0.745 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 7.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 3.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 753 ;17.798 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4941 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 891 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 694 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 55 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2123 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2139 ; 2.405 ; 5.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2139 ; 2.405 ; 5.130 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2672 ; 3.769 ; 7.678 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2673 ; 3.768 ; 7.680 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2330 ; 3.965 ; 5.396 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2331 ; 3.964 ; 5.395 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3378 ; 5.636 ; 7.977 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3379 ; 5.688 ; 7.975 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9LUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300056322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 98.15 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH 7.5, (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.12100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 105.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.12100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 105.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 105.12100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 105.12100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 105.12100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 105.12100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 105.12100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 105.12100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 105.12100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 105.12100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 105.12100 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 157.68150 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.56050 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 157.68150 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 157.68150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 157.68150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.56050 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.68150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.56050 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 157.68150 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 52.56050 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 157.68150 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 52.56050 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 52.56050 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 157.68150 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 52.56050 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 157.68150 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 157.68150 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 157.68150 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 52.56050 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 157.68150 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 157.68150 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 52.56050 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 52.56050 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 52.56050 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 157.68150 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 52.56050 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 157.68150 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 52.56050 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 157.68150 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 157.68150 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 157.68150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 542 REMARK 465 VAL A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 224 NI NI A 601 1.23 REMARK 500 HE2 HIS A 272 NI NI A 601 1.30 REMARK 500 HE2 HIS A 338 NI NI A 601 1.31 REMARK 500 HG1 THR A 222 H HIS A 224 1.35 REMARK 500 HE2 HIS A 528 NI NI A 601 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 44 64.29 -152.33 REMARK 500 LYS A 45 53.65 -93.51 REMARK 500 ASP A 66 78.28 38.64 REMARK 500 ASN A 87 75.16 -161.40 REMARK 500 ALA A 94 -102.62 -142.13 REMARK 500 MET A 137 -44.21 -133.41 REMARK 500 THR A 367 17.69 -63.90 REMARK 500 VAL A 368 -94.79 40.61 REMARK 500 LYS A 369 -155.73 49.64 REMARK 500 ALA A 400 36.45 95.36 REMARK 500 ILE A 426 -51.99 68.98 REMARK 500 PHE A 527 -116.64 -113.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 44 LYS A 45 142.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN A 608 REMARK 610 OXN A 609 REMARK 610 OXN A 610 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 601 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HIS A 272 NE2 94.2 REMARK 620 3 HIS A 338 NE2 102.6 99.7 REMARK 620 4 HIS A 528 NE2 92.0 167.3 89.8 REMARK 620 5 HOH A 737 O 152.9 87.4 103.8 82.1 REMARK 620 N 1 2 3 4 DBREF 9LUZ A 1 543 UNP D4QE74 D4QE74_9LAMI 1 543 SEQRES 1 A 543 MET GLY MET GLN GLY GLU ASP ALA GLN ARG THR GLY ASN SEQRES 2 A 543 ILE VAL ALA VAL LYS PRO LYS PRO SER GLN GLY LEU THR SEQRES 3 A 543 SER LYS ALA ILE ASP TRP LEU GLU TRP LEU PHE VAL LYS SEQRES 4 A 543 MET MET HIS ASP SER LYS GLN PRO LEU HIS TYR LEU SER SEQRES 5 A 543 GLY ASN PHE ALA PRO VAL ASP GLU THR PRO PRO LEU LYS SEQRES 6 A 543 ASP LEU PRO VAL THR GLY HIS LEU PRO GLU CYS LEU ASN SEQRES 7 A 543 GLY GLU PHE VAL ARG VAL GLY PRO ASN PRO LYS PHE ALA SEQRES 8 A 543 SER ILE ALA GLY TYR HIS TRP PHE ASP GLY ASP GLY MET SEQRES 9 A 543 ILE HIS GLY MET ARG ILE LYS ASP GLY LYS ALA THR TYR SEQRES 10 A 543 VAL SER ARG TYR VAL GLN THR SER ARG LEU LYS GLN GLU SEQRES 11 A 543 GLU PHE PHE GLY ARG ALA MET PHE MET LYS ILE GLY ASP SEQRES 12 A 543 LEU LYS GLY MET PHE GLY LEU LEU MET VAL ASN MET GLN SEQRES 13 A 543 MET LEU ARG ALA LYS LEU LYS VAL LEU ASP ILE SER TYR SEQRES 14 A 543 GLY ILE GLY THR ALA ASN THR ALA LEU VAL TYR HIS HIS SEQRES 15 A 543 GLY LYS LEU LEU ALA LEU SER GLU ALA ASP LYS PRO TYR SEQRES 16 A 543 ALA ILE LYS VAL LEU GLU ASP GLY ASP LEU GLN THR ILE SEQRES 17 A 543 GLY LEU LEU ASP TYR ASP LYS ARG LEU ALA HIS SER PHE SEQRES 18 A 543 THR ALA HIS PRO LYS VAL ASP PRO PHE THR GLY GLU MET SEQRES 19 A 543 PHE THR PHE GLY TYR SER HIS THR PRO PRO TYR VAL THR SEQRES 20 A 543 TYR ARG VAL ILE SER LYS ASP GLY ALA MET ASN ASP PRO SEQRES 21 A 543 VAL PRO ILE THR VAL SER GLY PRO ILE MET MET HIS ASP SEQRES 22 A 543 PHE ALA ILE THR GLU ASN TYR ALA ILE PHE MET ASP LEU SEQRES 23 A 543 PRO LEU TYR PHE LYS PRO LYS GLU MET VAL LYS ASP LYS SEQRES 24 A 543 LYS PHE ILE PHE SER PHE ASP ALA THR GLN LYS ALA ARG SEQRES 25 A 543 PHE GLY ILE LEU PRO ARG TYR ALA LYS ASN GLU LEU LEU SEQRES 26 A 543 ILE LYS TRP PHE GLU LEU PRO ASN CYS PHE ILE PHE HIS SEQRES 27 A 543 ASN ALA ASN ALA TRP GLU GLU GLY ASP GLU VAL VAL LEU SEQRES 28 A 543 ILE THR CYS ARG LEU GLU ASN PRO ASP LEU ASP MET VAL SEQRES 29 A 543 ASN SER THR VAL LYS GLU ARG LEU ASP ASN PHE LYS ASN SEQRES 30 A 543 GLU LEU TYR GLU MET ARG PHE ASN LEU GLN ASN GLY LEU SEQRES 31 A 543 ALA SER GLN LYS LYS LEU SER VAL SER ALA VAL ASP PHE SEQRES 32 A 543 PRO ARG VAL ASN GLU SER TYR THR THR ARG LYS GLN ARG SEQRES 33 A 543 TYR VAL TYR GLY THR THR LEU ASP LYS ILE ALA LYS VAL SEQRES 34 A 543 THR GLY ILE ILE LYS PHE ASP LEU HIS ALA GLU PRO GLU SEQRES 35 A 543 THR GLY LYS GLU LYS LEU GLU LEU GLY GLY ASN VAL LYS SEQRES 36 A 543 GLY ILE PHE ASP LEU GLY PRO GLY ARG PHE GLY SER GLU SEQRES 37 A 543 ALA VAL PHE VAL PRO ARG HIS PRO GLY ILE THR SER GLU SEQRES 38 A 543 GLU ASP ASP GLY TYR LEU ILE PHE PHE VAL HIS ASP GLU SEQRES 39 A 543 ASN THR GLY LYS SER ALA VAL ASN VAL ILE ASP ALA LYS SEQRES 40 A 543 THR MET SER PRO ASP PRO VAL ALA VAL VAL GLU LEU PRO SEQRES 41 A 543 LYS ARG VAL PRO TYR GLY PHE HIS ALA PHE PHE VAL THR SEQRES 42 A 543 GLU ASP GLN LEU GLN GLU GLN ALA LYS VAL HET NI A 601 1 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET OXN A 608 57 HET OXN A 609 57 HET OXN A 610 57 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETNAM OXN OXTOXYNOL-10 HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 2 NI NI 2+ FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 OXN 3(C34 H62 O11) FORMUL 12 HOH *263(H2 O) HELIX 1 AA1 GLY A 24 HIS A 42 1 19 HELIX 2 AA2 LEU A 48 ALA A 56 5 9 HELIX 3 AA3 PRO A 74 LEU A 77 5 4 HELIX 4 AA4 HIS A 97 GLY A 101 5 5 HELIX 5 AA5 THR A 124 GLY A 134 1 11 HELIX 6 AA6 LYS A 140 LEU A 144 5 5 HELIX 7 AA7 LYS A 145 LEU A 162 1 18 HELIX 8 AA8 LYS A 291 ASP A 298 1 8 HELIX 9 AA9 ASP A 360 ASN A 365 5 6 HELIX 10 AB1 ASN A 407 THR A 411 5 5 HELIX 11 AB2 GLU A 534 ALA A 541 1 8 SHEET 1 AA1 6 ARG A 10 THR A 11 0 SHEET 2 AA1 6 ILE A 14 VAL A 15 -1 O ILE A 14 N THR A 11 SHEET 3 AA1 6 LEU A 205 LEU A 211 -1 O LEU A 210 N VAL A 15 SHEET 4 AA1 6 TYR A 195 VAL A 199 -1 N LYS A 198 O GLN A 206 SHEET 5 AA1 6 LYS A 184 LEU A 188 -1 N ALA A 187 O TYR A 195 SHEET 6 AA1 6 ALA A 177 HIS A 181 -1 N ALA A 177 O LEU A 188 SHEET 1 AA2 5 THR A 61 LEU A 64 0 SHEET 2 AA2 5 LYS A 114 TYR A 121 -1 O TYR A 117 N LEU A 64 SHEET 3 AA2 5 GLY A 103 LYS A 111 -1 N GLY A 107 O VAL A 118 SHEET 4 AA2 5 GLY A 79 PRO A 86 -1 N GLY A 79 O ILE A 110 SHEET 5 AA2 5 ALA A 529 THR A 533 -1 O VAL A 532 N GLU A 80 SHEET 1 AA3 5 VAL A 69 GLY A 71 0 SHEET 2 AA3 5 ALA A 515 LEU A 519 -1 O VAL A 516 N THR A 70 SHEET 3 AA3 5 SER A 499 ASP A 505 -1 N VAL A 503 O ALA A 515 SHEET 4 AA3 5 GLY A 485 ASP A 493 -1 N PHE A 489 O ASN A 502 SHEET 5 AA3 5 ARG A 464 GLY A 466 -1 N PHE A 465 O HIS A 492 SHEET 1 AA4 5 VAL A 69 GLY A 71 0 SHEET 2 AA4 5 ALA A 515 LEU A 519 -1 O VAL A 516 N THR A 70 SHEET 3 AA4 5 SER A 499 ASP A 505 -1 N VAL A 503 O ALA A 515 SHEET 4 AA4 5 GLY A 485 ASP A 493 -1 N PHE A 489 O ASN A 502 SHEET 5 AA4 5 VAL A 470 PRO A 473 -1 N VAL A 472 O TYR A 486 SHEET 1 AA5 4 LYS A 226 VAL A 227 0 SHEET 2 AA5 4 MET A 234 TYR A 239 -1 O PHE A 235 N LYS A 226 SHEET 3 AA5 4 VAL A 246 ILE A 251 -1 O ILE A 251 N MET A 234 SHEET 4 AA5 4 VAL A 261 ILE A 263 -1 O VAL A 261 N TYR A 248 SHEET 1 AA6 4 ALA A 275 ILE A 276 0 SHEET 2 AA6 4 TYR A 280 ASP A 285 -1 O ILE A 282 N ALA A 275 SHEET 3 AA6 4 ALA A 311 PRO A 317 -1 O GLY A 314 N PHE A 283 SHEET 4 AA6 4 LYS A 327 LEU A 331 -1 O LYS A 327 N ILE A 315 SHEET 1 AA7 2 LEU A 288 PHE A 290 0 SHEET 2 AA7 2 PHE A 303 PHE A 305 -1 O SER A 304 N TYR A 289 SHEET 1 AA8 4 PHE A 335 GLU A 345 0 SHEET 2 AA8 4 GLU A 348 LEU A 356 -1 O VAL A 350 N TRP A 343 SHEET 3 AA8 4 GLU A 378 ASN A 385 -1 O MET A 382 N LEU A 351 SHEET 4 AA8 4 ALA A 391 LYS A 395 -1 O LYS A 394 N GLU A 381 SHEET 1 AA9 4 VAL A 401 ARG A 405 0 SHEET 2 AA9 4 TYR A 417 ASP A 424 -1 O TYR A 419 N ARG A 405 SHEET 3 AA9 4 LYS A 428 ASP A 436 -1 O PHE A 435 N VAL A 418 SHEET 4 AA9 4 VAL A 454 ASP A 459 -1 O PHE A 458 N ILE A 432 LINK NE2 HIS A 224 NI NI A 601 1555 1555 2.10 LINK NE2 HIS A 272 NI NI A 601 1555 1555 2.17 LINK NE2 HIS A 338 NI NI A 601 1555 1555 2.15 LINK NE2 HIS A 528 NI NI A 601 1555 1555 2.14 LINK NI NI A 601 O HOH A 737 1555 1555 2.16 CISPEP 1 PRO A 243 PRO A 244 0 -5.79 CRYST1 210.242 210.242 210.242 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004756 0.00000 CONECT 3443 8505 CONECT 4179 8505 CONECT 5316 8505 CONECT 8293 8505 CONECT 8505 3443 4179 5316 8293 CONECT 8505 8743 CONECT 8506 8507 8508 8509 8510 CONECT 8507 8506 CONECT 8508 8506 CONECT 8509 8506 CONECT 8510 8506 CONECT 8511 8512 8513 8514 8515 CONECT 8512 8511 CONECT 8513 8511 CONECT 8514 8511 CONECT 8515 8511 CONECT 8516 8517 8518 8519 8520 CONECT 8517 8516 CONECT 8518 8516 CONECT 8519 8516 CONECT 8520 8516 CONECT 8521 8522 8523 8524 8525 CONECT 8522 8521 CONECT 8523 8521 CONECT 8524 8521 CONECT 8525 8521 CONECT 8526 8527 8528 8529 8530 CONECT 8527 8526 CONECT 8528 8526 CONECT 8529 8526 CONECT 8530 8526 CONECT 8531 8532 8533 8534 8535 CONECT 8532 8531 CONECT 8533 8531 CONECT 8534 8531 CONECT 8535 8531 CONECT 8536 8537 8541 8560 8561 CONECT 8537 8536 8538 8539 8540 CONECT 8538 8537 8562 8563 8564 CONECT 8539 8537 8565 8566 8567 CONECT 8540 8537 8568 8569 8570 CONECT 8541 8536 8542 8543 8544 CONECT 8542 8541 8545 8549 CONECT 8543 8541 8571 8572 8573 CONECT 8544 8541 8574 8575 8576 CONECT 8545 8542 8546 8577 CONECT 8546 8545 8547 8578 CONECT 8547 8546 8548 8550 CONECT 8548 8547 8549 8579 CONECT 8549 8542 8548 8580 CONECT 8550 8547 8551 CONECT 8551 8550 8552 8581 8582 CONECT 8552 8551 8553 8583 8584 CONECT 8553 8552 8554 CONECT 8554 8553 8555 8585 8586 CONECT 8555 8554 8556 8587 8588 CONECT 8556 8555 8557 CONECT 8557 8556 8558 8589 8590 CONECT 8558 8557 8559 8591 8592 CONECT 8559 8558 CONECT 8560 8536 CONECT 8561 8536 CONECT 8562 8538 CONECT 8563 8538 CONECT 8564 8538 CONECT 8565 8539 CONECT 8566 8539 CONECT 8567 8539 CONECT 8568 8540 CONECT 8569 8540 CONECT 8570 8540 CONECT 8571 8543 CONECT 8572 8543 CONECT 8573 8543 CONECT 8574 8544 CONECT 8575 8544 CONECT 8576 8544 CONECT 8577 8545 CONECT 8578 8546 CONECT 8579 8548 CONECT 8580 8549 CONECT 8581 8551 CONECT 8582 8551 CONECT 8583 8552 CONECT 8584 8552 CONECT 8585 8554 CONECT 8586 8554 CONECT 8587 8555 CONECT 8588 8555 CONECT 8589 8557 CONECT 8590 8557 CONECT 8591 8558 CONECT 8592 8558 CONECT 8593 8594 8598 8617 8618 CONECT 8594 8593 8595 8596 8597 CONECT 8595 8594 8619 8620 8621 CONECT 8596 8594 8622 8623 8624 CONECT 8597 8594 8625 8626 8627 CONECT 8598 8593 8599 8600 8601 CONECT 8599 8598 8602 8606 CONECT 8600 8598 8628 8629 8630 CONECT 8601 8598 8631 8632 8633 CONECT 8602 8599 8603 8634 CONECT 8603 8602 8604 8635 CONECT 8604 8603 8605 8607 CONECT 8605 8604 8606 8636 CONECT 8606 8599 8605 8637 CONECT 8607 8604 8608 CONECT 8608 8607 8609 8638 8639 CONECT 8609 8608 8610 8640 8641 CONECT 8610 8609 8611 CONECT 8611 8610 8612 8642 8643 CONECT 8612 8611 8613 8644 8645 CONECT 8613 8612 8614 CONECT 8614 8613 8615 8646 8647 CONECT 8615 8614 8616 8648 8649 CONECT 8616 8615 CONECT 8617 8593 CONECT 8618 8593 CONECT 8619 8595 CONECT 8620 8595 CONECT 8621 8595 CONECT 8622 8596 CONECT 8623 8596 CONECT 8624 8596 CONECT 8625 8597 CONECT 8626 8597 CONECT 8627 8597 CONECT 8628 8600 CONECT 8629 8600 CONECT 8630 8600 CONECT 8631 8601 CONECT 8632 8601 CONECT 8633 8601 CONECT 8634 8602 CONECT 8635 8603 CONECT 8636 8605 CONECT 8637 8606 CONECT 8638 8608 CONECT 8639 8608 CONECT 8640 8609 CONECT 8641 8609 CONECT 8642 8611 CONECT 8643 8611 CONECT 8644 8612 CONECT 8645 8612 CONECT 8646 8614 CONECT 8647 8614 CONECT 8648 8615 CONECT 8649 8615 CONECT 8650 8651 8655 8674 8675 CONECT 8651 8650 8652 8653 8654 CONECT 8652 8651 8676 8677 8678 CONECT 8653 8651 8679 8680 8681 CONECT 8654 8651 8682 8683 8684 CONECT 8655 8650 8656 8657 8658 CONECT 8656 8655 8659 8663 CONECT 8657 8655 8685 8686 8687 CONECT 8658 8655 8688 8689 8690 CONECT 8659 8656 8660 8691 CONECT 8660 8659 8661 8692 CONECT 8661 8660 8662 8664 CONECT 8662 8661 8663 8693 CONECT 8663 8656 8662 8694 CONECT 8664 8661 8665 CONECT 8665 8664 8666 8695 8696 CONECT 8666 8665 8667 8697 8698 CONECT 8667 8666 8668 CONECT 8668 8667 8669 8699 8700 CONECT 8669 8668 8670 8701 8702 CONECT 8670 8669 8671 CONECT 8671 8670 8672 8703 8704 CONECT 8672 8671 8673 8705 8706 CONECT 8673 8672 CONECT 8674 8650 CONECT 8675 8650 CONECT 8676 8652 CONECT 8677 8652 CONECT 8678 8652 CONECT 8679 8653 CONECT 8680 8653 CONECT 8681 8653 CONECT 8682 8654 CONECT 8683 8654 CONECT 8684 8654 CONECT 8685 8657 CONECT 8686 8657 CONECT 8687 8657 CONECT 8688 8658 CONECT 8689 8658 CONECT 8690 8658 CONECT 8691 8659 CONECT 8692 8660 CONECT 8693 8662 CONECT 8694 8663 CONECT 8695 8665 CONECT 8696 8665 CONECT 8697 8666 CONECT 8698 8666 CONECT 8699 8668 CONECT 8700 8668 CONECT 8701 8669 CONECT 8702 8669 CONECT 8703 8671 CONECT 8704 8671 CONECT 8705 8672 CONECT 8706 8672 CONECT 8743 8505 MASTER 412 0 10 11 39 0 0 6 4627 1 208 42 END