HEADER HYDROLASE 26-FEB-25 9M20 TITLE GMMAN19-1 FROM GLYCINE MAX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: GLYMA_19G223000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNANASE, GH5, SOYBEAN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.LIN,C.H.HSU REVDAT 1 04-FEB-26 9M20 0 JRNL AUTH C.J.LIN,C.C.CHO,S.C.CHEN,G.M.LIN,C.Y.HUANG,C.H.HSU JRNL TITL UNVEILING THE STRUCTURAL AND BIOCHEMICAL CHARACTERISTICS OF JRNL TITL 2 AN ACIDOPHILIC BETA-MANNANASE FROM SOYBEAN ( GLYCINE MAX ). JRNL REF J.AGRIC.FOOD CHEM. V. 73 25479 2025 JRNL REFN ESSN 1520-5118 JRNL PMID 40994130 JRNL DOI 10.1021/ACS.JAFC.5C03141 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 17.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.2 REMARK 3 NUMBER OF REFLECTIONS : 108306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 3.7587 0.96 6741 209 0.0939 0.1271 REMARK 3 2 3.7587 - 2.9890 0.97 6764 184 0.1110 0.1284 REMARK 3 3 2.9890 - 2.6129 0.96 6769 195 0.1259 0.1610 REMARK 3 4 2.6129 - 2.3747 0.97 6737 192 0.1307 0.1307 REMARK 3 5 2.3747 - 2.2049 0.97 6776 184 0.1405 0.1732 REMARK 3 6 2.2049 - 2.0752 0.96 6693 191 0.1497 0.1771 REMARK 3 7 2.0752 - 1.9714 0.94 6595 201 0.1531 0.1850 REMARK 3 8 1.9714 - 1.8857 0.92 6453 178 0.1530 0.1952 REMARK 3 9 1.8857 - 1.8132 0.90 6309 192 0.1601 0.1696 REMARK 3 10 1.8132 - 1.7507 0.88 6165 178 0.1653 0.2132 REMARK 3 11 1.7507 - 1.6960 0.83 5806 160 0.1683 0.2043 REMARK 3 12 1.6960 - 1.6476 0.71 4996 149 0.1677 0.1677 REMARK 3 13 1.6476 - 1.6043 0.59 4104 114 0.1751 0.1652 REMARK 3 14 1.6043 - 1.5651 0.52 3626 106 0.1781 0.1968 REMARK 3 15 1.5651 - 1.5296 0.50 3506 97 0.1944 0.2197 REMARK 3 16 1.5296 - 1.4971 0.49 3430 96 0.1978 0.2349 REMARK 3 17 1.4971 - 1.4671 0.49 3477 99 0.2035 0.2036 REMARK 3 18 1.4671 - 1.4395 0.49 3409 101 0.2124 0.2247 REMARK 3 19 1.4395 - 1.4138 0.49 3410 95 0.2348 0.2819 REMARK 3 20 1.4138 - 1.3898 0.48 3403 100 0.2161 0.2161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3057 REMARK 3 ANGLE : 0.858 4140 REMARK 3 CHIRALITY : 0.074 428 REMARK 3 PLANARITY : 0.005 536 REMARK 3 DIHEDRAL : 4.220 1096 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.7989 101.2578 4.3825 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0832 REMARK 3 T33: 0.0659 T12: 0.0068 REMARK 3 T13: 0.0072 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9449 L22: 1.9349 REMARK 3 L33: 0.5310 L12: 0.1275 REMARK 3 L13: 0.1688 L23: 0.3990 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0659 S13: 0.0470 REMARK 3 S21: -0.1488 S22: 0.0136 S23: 0.0124 REMARK 3 S31: -0.0415 S32: 0.0317 S33: -0.0299 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2870 89.3170 3.8996 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0772 REMARK 3 T33: 0.0957 T12: -0.0068 REMARK 3 T13: -0.0033 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.6395 L22: 0.9901 REMARK 3 L33: 0.9368 L12: -0.2740 REMARK 3 L13: 0.2557 L23: -0.2274 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.0507 S13: -0.0470 REMARK 3 S21: -0.0877 S22: -0.0077 S23: 0.0481 REMARK 3 S31: 0.0286 S32: -0.0122 S33: -0.0070 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3761 79.6505 24.7111 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.0861 REMARK 3 T33: 0.1163 T12: 0.0061 REMARK 3 T13: 0.0125 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.2611 L22: 4.2521 REMARK 3 L33: 3.7296 L12: 0.2446 REMARK 3 L13: 1.5385 L23: -0.8591 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.1221 S13: -0.1550 REMARK 3 S21: 0.3614 S22: -0.0027 S23: -0.0712 REMARK 3 S31: 0.2022 S32: 0.0139 S33: 0.0247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.9607 91.0512 7.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.0680 T22: 0.0752 REMARK 3 T33: 0.1050 T12: 0.0058 REMARK 3 T13: 0.0001 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.3488 L22: 0.6541 REMARK 3 L33: 1.3970 L12: 0.0380 REMARK 3 L13: -0.0320 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.0208 S13: -0.0350 REMARK 3 S21: -0.0149 S22: -0.0023 S23: -0.0764 REMARK 3 S31: 0.0311 S32: 0.0897 S33: -0.0163 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7050 99.5759 24.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0600 REMARK 3 T33: 0.0771 T12: -0.0047 REMARK 3 T13: -0.0114 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.7373 L22: 0.9113 REMARK 3 L33: 1.3097 L12: -0.4115 REMARK 3 L13: -0.7129 L23: 0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.1671 S13: -0.0051 REMARK 3 S21: 0.1007 S22: 0.0477 S23: 0.0089 REMARK 3 S31: 0.0221 S32: 0.0345 S33: -0.0302 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9735 109.8637 23.7857 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0776 REMARK 3 T33: 0.0956 T12: 0.0220 REMARK 3 T13: 0.0032 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 9.0512 L22: 2.1698 REMARK 3 L33: 2.2731 L12: 2.3207 REMARK 3 L13: -1.8770 L23: -1.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.0009 S13: 0.4307 REMARK 3 S21: 0.0175 S22: 0.0364 S23: 0.3235 REMARK 3 S31: -0.1394 S32: -0.1877 S33: -0.0657 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8636 101.6329 10.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0663 REMARK 3 T33: 0.0980 T12: -0.0008 REMARK 3 T13: 0.0051 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.1960 L22: 0.5064 REMARK 3 L33: 0.3963 L12: 0.1467 REMARK 3 L13: 0.2184 L23: 0.0819 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.0253 S13: -0.0214 REMARK 3 S21: -0.0182 S22: 0.0114 S23: 0.0776 REMARK 3 S31: -0.0054 S32: -0.0312 S33: 0.0045 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0871 110.2799 2.0248 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0890 REMARK 3 T33: 0.1471 T12: 0.0080 REMARK 3 T13: -0.0116 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.3093 L22: 3.0111 REMARK 3 L33: 0.7192 L12: 2.8680 REMARK 3 L13: 0.5306 L23: 0.5620 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.2298 S13: 0.2069 REMARK 3 S21: -0.1492 S22: 0.1043 S23: 0.2556 REMARK 3 S31: -0.2324 S32: 0.0254 S33: 0.0447 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300056557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.389 REMARK 200 RESOLUTION RANGE LOW (A) : 23.938 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6 AND 30% PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.59100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.59100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.59100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1128 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 GLU A 0 REMARK 465 PHE A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 961 O HOH A 1043 1.63 REMARK 500 O HOH A 911 O HOH A 1043 1.77 REMARK 500 O HOH A 876 O HOH A 879 1.84 REMARK 500 O HOH A 905 O HOH A 951 1.84 REMARK 500 O HOH A 789 O HOH A 934 1.87 REMARK 500 O HOH A 533 O HOH A 856 1.87 REMARK 500 O HOH A 745 O HOH A 817 1.89 REMARK 500 NE2 GLN A 277 O HOH A 501 1.93 REMARK 500 O HOH A 993 O HOH A 1044 1.94 REMARK 500 O HOH A 1121 O HOH A 1122 1.95 REMARK 500 O HOH A 777 O HOH A 922 1.96 REMARK 500 O HOH A 505 O HOH A 612 1.98 REMARK 500 O HOH A 798 O HOH A 1065 1.99 REMARK 500 O HOH A 852 O HOH A 1066 2.02 REMARK 500 O HOH A 807 O HOH A 909 2.02 REMARK 500 O HOH A 513 O HOH A 556 2.02 REMARK 500 O HOH A 660 O HOH A 1003 2.03 REMARK 500 O HIS A 62 O HOH A 502 2.03 REMARK 500 NE2 GLN A 190 O HOH A 503 2.03 REMARK 500 O HOH A 613 O HOH A 943 2.04 REMARK 500 OE1 GLN A 235 O HOH A 504 2.04 REMARK 500 O HOH A 740 O HOH A 1038 2.05 REMARK 500 O HOH A 937 O HOH A 1074 2.06 REMARK 500 NE2 GLN A 286 O HOH A 505 2.07 REMARK 500 O HOH A 524 O HOH A 902 2.08 REMARK 500 O HOH A 980 O HOH A 982 2.09 REMARK 500 O HOH A 929 O HOH A 1044 2.10 REMARK 500 O HOH A 1094 O HOH A 1121 2.10 REMARK 500 O HOH A 891 O HOH A 1014 2.11 REMARK 500 O HOH A 824 O HOH A 932 2.13 REMARK 500 OE2 GLU A 232 O HOH A 506 2.15 REMARK 500 O HOH A 587 O HOH A 804 2.16 REMARK 500 O HOH A 675 O HOH A 875 2.16 REMARK 500 OD2 ASP A 45 O HOH A 507 2.17 REMARK 500 O HOH A 865 O HOH A 885 2.18 REMARK 500 O HOH A 978 O HOH A 1091 2.18 REMARK 500 NZ LYS A 310 O HOH A 508 2.19 REMARK 500 O HOH A 1118 O HOH A 1121 2.19 REMARK 500 O HOH A 858 O HOH A 1045 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 554 O HOH A 714 2875 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -136.71 54.33 REMARK 500 ALA A 71 40.37 -98.48 REMARK 500 SER A 73 98.80 -166.75 REMARK 500 ASP A 192 78.89 -156.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1119 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1122 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1124 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1125 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A1128 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A1129 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1130 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A1131 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A1132 DISTANCE = 7.40 ANGSTROMS DBREF 9M20 A 2 383 UNP I1NBK5 I1NBK5_SOYBN 29 410 SEQADV 9M20 GLY A -3 UNP I1NBK5 EXPRESSION TAG SEQADV 9M20 SER A -2 UNP I1NBK5 EXPRESSION TAG SEQADV 9M20 PRO A -1 UNP I1NBK5 EXPRESSION TAG SEQADV 9M20 GLU A 0 UNP I1NBK5 EXPRESSION TAG SEQADV 9M20 PHE A 1 UNP I1NBK5 EXPRESSION TAG SEQRES 1 A 387 GLY SER PRO GLU PHE GLY ASP SER ALA ARG ILE LEU LEU SEQRES 2 A 387 GLN HIS GLY GLY PHE VAL GLN ARG SER SER THR ASN PHE SEQRES 3 A 387 VAL LEU ASN ASN LYS ARG PHE TYR PHE ASN GLY PHE ASN SEQRES 4 A 387 ALA TYR TRP LEU MET TYR MET ALA SER ASP PRO SER THR SEQRES 5 A 387 ARG PRO LYS VAL THR ALA VAL LEU GLN GLN ALA SER ASN SEQRES 6 A 387 HIS GLY LEU THR VAL ALA ARG THR TRP ALA PHE SER ASP SEQRES 7 A 387 GLY GLY TYR ARG ALA LEU GLN VAL SER PRO GLY SER TYR SEQRES 8 A 387 ASP GLU LYS VAL PHE ARG GLY LEU ASP PHE VAL VAL SER SEQRES 9 A 387 GLU ALA GLY LYS TYR GLY VAL ARG LEU ILE LEU SER LEU SEQRES 10 A 387 VAL ASN ASN TRP LYS ASP PHE GLY GLY LYS ASN GLN TYR SEQRES 11 A 387 VAL GLN TRP VAL LYS GLU HIS GLY GLN TYR VAL ASN SER SEQRES 12 A 387 GLU ASP ASP PHE PHE SER HIS PRO ILE ALA LYS GLN HIS SEQRES 13 A 387 TYR LYS ASN HIS ILE LYS ALA VAL LEU THR ARG LYS ASN SEQRES 14 A 387 THR ILE THR GLY VAL ALA TYR LYS ASP ASP PRO ALA ILE SEQRES 15 A 387 PHE ALA TRP GLU LEU MET ASN GLU PRO ARG SER GLN HIS SEQRES 16 A 387 ASP ASN SER GLY LYS VAL ILE GLN GLN TRP VAL ILE GLU SEQRES 17 A 387 MET ALA ALA TYR VAL LYS SER ILE ASP SER ASN HIS LEU SEQRES 18 A 387 LEU GLU ILE GLY LEU GLU GLY PHE TYR GLY GLU THR MET SEQRES 19 A 387 PRO GLU LYS LYS GLN ILE ASN PRO GLY TYR GLN LEU ILE SEQRES 20 A 387 GLY THR ASP PHE ILE SER ASN ASN LEU VAL HIS GLN VAL SEQRES 21 A 387 ASP PHE ALA THR MET HIS LEU TYR PRO GLU GLN TRP LEU SEQRES 22 A 387 PRO GLY SER ASN GLU ALA ALA GLN VAL ALA PHE VAL ASP SEQRES 23 A 387 LYS TRP LEU GLN THR HIS ILE GLN ASP ALA LYS ASN VAL SEQRES 24 A 387 LEU ALA LYS PRO ILE VAL VAL GLY GLU PHE GLY LYS SER SEQRES 25 A 387 LEU LYS SER TYR SER VAL VAL GLU ARG ASP ASN TYR LEU SEQRES 26 A 387 SER LYS MET TYR ASN ALA ILE TYR SER SER ALA SER SER SEQRES 27 A 387 GLY GLY PRO CYS ALA GLY GLY LEU PHE TRP GLN LEU MET SEQRES 28 A 387 ALA GLN GLY MET ASP GLY PHE ARG ASP GLY TYR GLU VAL SEQRES 29 A 387 VAL PHE GLU GLU SER PRO SER THR THR ARG ILE ILE ASP SEQRES 30 A 387 GLN GLN SER HIS LYS MET SER SER ILE ALA HET TRS A 401 8 HET GOL A 402 6 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *632(H2 O) HELIX 1 AA1 TRP A 38 SER A 44 1 7 HELIX 2 AA2 THR A 48 HIS A 62 1 15 HELIX 3 AA3 ASP A 88 GLY A 106 1 19 HELIX 4 AA4 GLY A 121 HIS A 133 1 13 HELIX 5 AA5 ASP A 141 HIS A 146 1 6 HELIX 6 AA6 HIS A 146 THR A 162 1 17 HELIX 7 AA7 ALA A 171 ASP A 175 5 5 HELIX 8 AA8 GLY A 195 ASP A 213 1 19 HELIX 9 AA9 MET A 230 GLN A 241 5 12 HELIX 10 AB1 ASP A 246 VAL A 253 1 8 HELIX 11 AB2 TYR A 264 LEU A 269 1 6 HELIX 12 AB3 ASN A 273 VAL A 295 1 23 HELIX 13 AB4 SER A 313 SER A 333 1 21 HELIX 14 AB5 MET A 351 ARG A 355 5 5 HELIX 15 AB6 VAL A 361 GLU A 364 5 4 HELIX 16 AB7 SER A 365 SER A 381 1 17 SHEET 1 AA1 3 GLN A 16 SER A 18 0 SHEET 2 AA1 3 ASN A 21 LEU A 24 -1 O VAL A 23 N GLN A 16 SHEET 3 AA1 3 LYS A 27 PHE A 29 -1 O LYS A 27 N LEU A 24 SHEET 1 AA2 8 LEU A 217 GLU A 219 0 SHEET 2 AA2 8 ILE A 178 GLU A 182 1 N TRP A 181 O LEU A 217 SHEET 3 AA2 8 ARG A 108 SER A 112 1 N LEU A 109 O PHE A 179 SHEET 4 AA2 8 VAL A 66 TRP A 70 1 N ALA A 67 O ARG A 108 SHEET 5 AA2 8 PHE A 31 ASN A 35 1 N PHE A 34 O ARG A 68 SHEET 6 AA2 8 CYS A 338 PHE A 343 1 O PHE A 343 N ASN A 35 SHEET 7 AA2 8 ILE A 300 PHE A 305 1 N VAL A 302 O LEU A 342 SHEET 8 AA2 8 ALA A 259 LEU A 263 1 N ALA A 259 O VAL A 301 SHEET 1 AA3 2 GLN A 81 SER A 83 0 SHEET 2 AA3 2 SER A 86 TYR A 87 -1 O SER A 86 N SER A 83 CISPEP 1 TRP A 344 GLN A 345 0 3.64 CRYST1 84.442 84.442 87.182 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011842 0.006837 0.000000 0.00000 SCALE2 0.000000 0.013674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011470 0.00000 CONECT 2967 2968 2969 2970 2971 CONECT 2968 2967 2972 CONECT 2969 2967 2973 CONECT 2970 2967 2974 CONECT 2971 2967 CONECT 2972 2968 CONECT 2973 2969 CONECT 2974 2970 CONECT 2975 2976 2977 CONECT 2976 2975 CONECT 2977 2975 2978 2979 CONECT 2978 2977 CONECT 2979 2977 2980 CONECT 2980 2979 MASTER 485 0 2 16 13 0 0 6 3611 1 14 30 END