HEADER HYDROLASE 26-FEB-25 9M21 TITLE GMMAN19-1 FROM GLYCINE MAX IN COMPLEX WITH MANNOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNAN ENDO-1,4-BETA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: GLYMA_19G223000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNANASE, GH5, SOYBEAN, MANNOPENTAOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.LIN,C.H.HSU REVDAT 1 04-FEB-26 9M21 0 JRNL AUTH C.J.LIN,C.C.CHO,S.C.CHEN,G.M.LIN,C.Y.HUANG,C.H.HSU JRNL TITL UNVEILING THE STRUCTURAL AND BIOCHEMICAL CHARACTERISTICS OF JRNL TITL 2 AN ACIDOPHILIC BETA-MANNANASE FROM SOYBEAN ( GLYCINE MAX ). JRNL REF J.AGRIC.FOOD CHEM. V. 73 25479 2025 JRNL REFN ESSN 1520-5118 JRNL PMID 40994130 JRNL DOI 10.1021/ACS.JAFC.5C03141 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 138.34 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 10167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.0040 0.90 1348 147 0.1596 0.1929 REMARK 3 2 5.0040 - 3.9806 0.90 1332 144 0.1161 0.1967 REMARK 3 3 3.9806 - 3.4800 0.90 1325 141 0.1362 0.2177 REMARK 3 4 3.4800 - 3.1629 0.90 1320 146 0.1690 0.2355 REMARK 3 5 3.1629 - 2.9369 0.90 1317 149 0.1838 0.3011 REMARK 3 6 2.9369 - 2.7641 0.89 1302 142 0.2023 0.3332 REMARK 3 7 2.7641 - 2.6260 0.83 1199 135 0.2168 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3164 REMARK 3 ANGLE : 0.947 4302 REMARK 3 CHIRALITY : 0.048 478 REMARK 3 PLANARITY : 0.006 535 REMARK 3 DIHEDRAL : 3.506 1774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.1497 23.5651 1.9170 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0449 REMARK 3 T33: 0.3369 T12: 0.0543 REMARK 3 T13: -0.0100 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.0079 L22: 0.0243 REMARK 3 L33: 0.0362 L12: 0.0001 REMARK 3 L13: 0.0085 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: 0.0385 S13: 0.0344 REMARK 3 S21: -0.0076 S22: 0.0125 S23: -0.0700 REMARK 3 S31: 0.0027 S32: 0.0192 S33: 0.0581 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.4819 12.3105 -0.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0805 REMARK 3 T33: 0.1993 T12: 0.0574 REMARK 3 T13: -0.0281 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.0322 L22: 0.0165 REMARK 3 L33: 0.0038 L12: -0.0182 REMARK 3 L13: -0.0118 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0044 S13: -0.0233 REMARK 3 S21: 0.0096 S22: 0.0244 S23: -0.0033 REMARK 3 S31: 0.0102 S32: 0.0059 S33: 0.0036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.9567 13.9810 12.8758 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0156 REMARK 3 T33: 0.3083 T12: 0.0341 REMARK 3 T13: -0.0036 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0105 L22: 0.0123 REMARK 3 L33: 0.0097 L12: 0.0059 REMARK 3 L13: -0.0095 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0041 S13: 0.0217 REMARK 3 S21: 0.0184 S22: 0.0064 S23: -0.0039 REMARK 3 S31: -0.0016 S32: -0.0048 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8569 21.1365 22.6003 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0668 REMARK 3 T33: 0.2381 T12: 0.0173 REMARK 3 T13: -0.0411 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.0206 L22: 0.0011 REMARK 3 L33: 0.0031 L12: -0.0055 REMARK 3 L13: 0.0083 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0061 S13: -0.0076 REMARK 3 S21: 0.0071 S22: -0.0073 S23: -0.0008 REMARK 3 S31: 0.0039 S32: 0.0072 S33: 0.0081 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.3482 28.9733 22.7402 REMARK 3 T TENSOR REMARK 3 T11: 0.0526 T22: 0.0666 REMARK 3 T33: 0.3452 T12: -0.0388 REMARK 3 T13: -0.0065 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.0487 L22: 0.0107 REMARK 3 L33: 0.0094 L12: 0.0043 REMARK 3 L13: -0.0018 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0470 S13: 0.0034 REMARK 3 S21: 0.0134 S22: 0.0263 S23: -0.0003 REMARK 3 S31: -0.0112 S32: 0.0174 S33: 0.0206 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -78.8850 36.7346 22.3328 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0626 REMARK 3 T33: 0.1824 T12: 0.0384 REMARK 3 T13: 0.0247 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.0060 L22: 0.0029 REMARK 3 L33: 0.0076 L12: 0.0029 REMARK 3 L13: -0.0003 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0109 S13: 0.0033 REMARK 3 S21: 0.0134 S22: 0.0160 S23: 0.0083 REMARK 3 S31: -0.0155 S32: -0.0058 S33: 0.0136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.9551 28.2522 8.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0815 REMARK 3 T33: 0.3520 T12: -0.0175 REMARK 3 T13: -0.0166 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.0378 L22: 0.0048 REMARK 3 L33: 0.0082 L12: 0.0135 REMARK 3 L13: -0.0080 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0189 S13: -0.0381 REMARK 3 S21: -0.0102 S22: -0.0151 S23: 0.0192 REMARK 3 S31: 0.0185 S32: -0.0267 S33: -0.0214 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.0081 36.7207 0.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0623 REMARK 3 T33: 0.2845 T12: -0.0057 REMARK 3 T13: -0.0081 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.0069 REMARK 3 L33: 0.0085 L12: 0.0050 REMARK 3 L13: -0.0036 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0115 S13: 0.0182 REMARK 3 S21: -0.0110 S22: -0.0259 S23: -0.0012 REMARK 3 S31: -0.0179 S32: -0.0015 S33: -0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300056558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.621 REMARK 200 RESOLUTION RANGE LOW (A) : 26.119 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.18800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIHYDRATE PH4.6, 30% PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.05250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.05250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.05250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 GLU A 0 REMARK 465 PHE A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 252 O HOH A 501 1.82 REMARK 500 O HOH A 600 O HOH A 609 1.89 REMARK 500 O TYR A 30 O HOH A 502 1.95 REMARK 500 O HOH A 589 O HOH A 611 2.07 REMARK 500 O HOH A 532 O HOH A 535 2.09 REMARK 500 OE1 GLU A 89 O HOH A 503 2.09 REMARK 500 OG SER A 380 O HOH A 504 2.10 REMARK 500 O ASN A 251 NZ LYS A 298 2.13 REMARK 500 OD1 ASP A 142 O HOH A 505 2.15 REMARK 500 O LEU A 263 O HOH A 506 2.16 REMARK 500 O HOH A 535 O HOH A 610 2.16 REMARK 500 O3 BMA B 3 O HOH A 513 2.16 REMARK 500 O ASN A 294 O HOH A 507 2.17 REMARK 500 OD1 ASP A 291 O HOH A 508 2.17 REMARK 500 O GLY A 335 O HOH A 509 2.18 REMARK 500 OG1 THR A 245 O HOH A 510 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 561 5444 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -127.96 55.48 REMARK 500 ALA A 36 73.57 -159.99 REMARK 500 ALA A 71 50.90 -100.09 REMARK 500 SER A 73 102.69 -171.32 REMARK 500 PRO A 84 104.49 -51.71 REMARK 500 ASP A 192 70.07 -156.45 REMARK 500 ASP A 246 84.10 -163.76 REMARK 500 PHE A 247 -37.96 -38.96 REMARK 500 ILE A 248 -71.54 -78.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 9M21 A 2 383 UNP I1NBK5 I1NBK5_SOYBN 29 410 SEQADV 9M21 GLY A -3 UNP I1NBK5 EXPRESSION TAG SEQADV 9M21 SER A -2 UNP I1NBK5 EXPRESSION TAG SEQADV 9M21 PRO A -1 UNP I1NBK5 EXPRESSION TAG SEQADV 9M21 GLU A 0 UNP I1NBK5 EXPRESSION TAG SEQADV 9M21 PHE A 1 UNP I1NBK5 EXPRESSION TAG SEQRES 1 A 387 GLY SER PRO GLU PHE GLY ASP SER ALA ARG ILE LEU LEU SEQRES 2 A 387 GLN HIS GLY GLY PHE VAL GLN ARG SER SER THR ASN PHE SEQRES 3 A 387 VAL LEU ASN ASN LYS ARG PHE TYR PHE ASN GLY PHE ASN SEQRES 4 A 387 ALA TYR TRP LEU MET TYR MET ALA SER ASP PRO SER THR SEQRES 5 A 387 ARG PRO LYS VAL THR ALA VAL LEU GLN GLN ALA SER ASN SEQRES 6 A 387 HIS GLY LEU THR VAL ALA ARG THR TRP ALA PHE SER ASP SEQRES 7 A 387 GLY GLY TYR ARG ALA LEU GLN VAL SER PRO GLY SER TYR SEQRES 8 A 387 ASP GLU LYS VAL PHE ARG GLY LEU ASP PHE VAL VAL SER SEQRES 9 A 387 GLU ALA GLY LYS TYR GLY VAL ARG LEU ILE LEU SER LEU SEQRES 10 A 387 VAL ASN ASN TRP LYS ASP PHE GLY GLY LYS ASN GLN TYR SEQRES 11 A 387 VAL GLN TRP VAL LYS GLU HIS GLY GLN TYR VAL ASN SER SEQRES 12 A 387 GLU ASP ASP PHE PHE SER HIS PRO ILE ALA LYS GLN HIS SEQRES 13 A 387 TYR LYS ASN HIS ILE LYS ALA VAL LEU THR ARG LYS ASN SEQRES 14 A 387 THR ILE THR GLY VAL ALA TYR LYS ASP ASP PRO ALA ILE SEQRES 15 A 387 PHE ALA TRP GLU LEU MET ASN GLU PRO ARG SER GLN HIS SEQRES 16 A 387 ASP ASN SER GLY LYS VAL ILE GLN GLN TRP VAL ILE GLU SEQRES 17 A 387 MET ALA ALA TYR VAL LYS SER ILE ASP SER ASN HIS LEU SEQRES 18 A 387 LEU GLU ILE GLY LEU GLU GLY PHE TYR GLY GLU THR MET SEQRES 19 A 387 PRO GLU LYS LYS GLN ILE ASN PRO GLY TYR GLN LEU ILE SEQRES 20 A 387 GLY THR ASP PHE ILE SER ASN ASN LEU VAL HIS GLN VAL SEQRES 21 A 387 ASP PHE ALA THR MET HIS LEU TYR PRO GLU GLN TRP LEU SEQRES 22 A 387 PRO GLY SER ASN GLU ALA ALA GLN VAL ALA PHE VAL ASP SEQRES 23 A 387 LYS TRP LEU GLN THR HIS ILE GLN ASP ALA LYS ASN VAL SEQRES 24 A 387 LEU ALA LYS PRO ILE VAL VAL GLY GLU PHE GLY LYS SER SEQRES 25 A 387 LEU LYS SER TYR SER VAL VAL GLU ARG ASP ASN TYR LEU SEQRES 26 A 387 SER LYS MET TYR ASN ALA ILE TYR SER SER ALA SER SER SEQRES 27 A 387 GLY GLY PRO CYS ALA GLY GLY LEU PHE TRP GLN LEU MET SEQRES 28 A 387 ALA GLN GLY MET ASP GLY PHE ARG ASP GLY TYR GLU VAL SEQRES 29 A 387 VAL PHE GLU GLU SER PRO SER THR THR ARG ILE ILE ASP SEQRES 30 A 387 GLN GLN SER HIS LYS MET SER SER ILE ALA HET BMA B 1 12 HET BMA B 2 11 HET BMA B 3 11 HET BMA B 4 11 HET BMA B 5 11 HET BMA C 1 12 HET BMA C 2 11 HET BMA C 3 11 HET BMA C 4 11 HET BMA C 5 11 HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 BMA 10(C6 H12 O6) FORMUL 4 HOH *115(H2 O) HELIX 1 AA1 TRP A 38 ASP A 45 1 8 HELIX 2 AA2 THR A 48 HIS A 62 1 15 HELIX 3 AA3 ASP A 88 TYR A 105 1 18 HELIX 4 AA4 GLY A 121 HIS A 133 1 13 HELIX 5 AA5 ASP A 141 HIS A 146 1 6 HELIX 6 AA6 HIS A 146 THR A 162 1 17 HELIX 7 AA7 ALA A 171 ASP A 175 5 5 HELIX 8 AA8 GLY A 195 ASP A 213 1 19 HELIX 9 AA9 MET A 230 GLN A 241 5 12 HELIX 10 AB1 ASP A 246 LEU A 252 1 7 HELIX 11 AB2 TYR A 264 LEU A 269 1 6 HELIX 12 AB3 ASN A 273 VAL A 295 1 23 HELIX 13 AB4 SER A 313 SER A 333 1 21 HELIX 14 AB5 MET A 351 ARG A 355 5 5 HELIX 15 AB6 VAL A 361 GLU A 364 5 4 HELIX 16 AB7 SER A 365 ILE A 382 1 18 SHEET 1 AA1 3 GLN A 16 SER A 18 0 SHEET 2 AA1 3 ASN A 21 LEU A 24 -1 O VAL A 23 N GLN A 16 SHEET 3 AA1 3 LYS A 27 PHE A 29 -1 O PHE A 29 N PHE A 22 SHEET 1 AA2 8 LEU A 217 GLU A 219 0 SHEET 2 AA2 8 ILE A 178 ASN A 185 1 N TRP A 181 O LEU A 217 SHEET 3 AA2 8 ARG A 108 ASN A 115 1 N VAL A 114 O ASN A 185 SHEET 4 AA2 8 VAL A 66 TRP A 70 1 N ALA A 67 O ARG A 108 SHEET 5 AA2 8 PHE A 31 ASN A 35 1 N PHE A 34 O ARG A 68 SHEET 6 AA2 8 CYS A 338 PHE A 343 1 O PHE A 343 N ASN A 35 SHEET 7 AA2 8 ILE A 300 PHE A 305 1 N VAL A 302 O LEU A 342 SHEET 8 AA2 8 ALA A 259 LEU A 263 1 N MET A 261 O VAL A 301 SHEET 1 AA3 2 GLN A 81 SER A 83 0 SHEET 2 AA3 2 SER A 86 TYR A 87 -1 O SER A 86 N SER A 83 LINK O4 ABMA B 1 C1 ABMA B 2 1555 1555 1.43 LINK O4 ABMA B 2 C1 ABMA B 3 1555 1555 1.45 LINK O4 ABMA B 3 C1 ABMA B 4 1555 1555 1.43 LINK O4 ABMA B 4 C1 ABMA B 5 1555 1555 1.44 LINK O4 BBMA C 1 C1 BBMA C 2 1555 1555 1.44 LINK O4 BBMA C 2 C1 BBMA C 3 1555 1555 1.44 LINK O4 BBMA C 3 C1 BBMA C 4 1555 1555 1.46 LINK O4 BBMA C 4 C1 BBMA C 5 1555 1555 1.43 CISPEP 1 TRP A 344 GLN A 345 0 8.88 CRYST1 83.742 83.742 86.105 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011941 0.006894 0.000000 0.00000 SCALE2 0.000000 0.013789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011614 0.00000 CONECT 2966 2967 2972 2976 CONECT 2967 2966 2968 2973 CONECT 2968 2967 2969 2974 CONECT 2969 2968 2970 2975 CONECT 2970 2969 2971 2976 CONECT 2971 2970 2977 CONECT 2972 2966 CONECT 2973 2967 CONECT 2974 2968 CONECT 2975 2969 2978 CONECT 2976 2966 2970 CONECT 2977 2971 CONECT 2978 2975 2979 2987 CONECT 2979 2978 2980 2984 CONECT 2980 2979 2981 2985 CONECT 2981 2980 2982 2986 CONECT 2982 2981 2983 2987 CONECT 2983 2982 2988 CONECT 2984 2979 CONECT 2985 2980 CONECT 2986 2981 2989 CONECT 2987 2978 2982 CONECT 2988 2983 CONECT 2989 2986 2990 2998 CONECT 2990 2989 2991 2995 CONECT 2991 2990 2992 2996 CONECT 2992 2991 2993 2997 CONECT 2993 2992 2994 2998 CONECT 2994 2993 2999 CONECT 2995 2990 CONECT 2996 2991 CONECT 2997 2992 3000 CONECT 2998 2989 2993 CONECT 2999 2994 CONECT 3000 2997 3001 3009 CONECT 3001 3000 3002 3006 CONECT 3002 3001 3003 3007 CONECT 3003 3002 3004 3008 CONECT 3004 3003 3005 3009 CONECT 3005 3004 3010 CONECT 3006 3001 CONECT 3007 3002 CONECT 3008 3003 3011 CONECT 3009 3000 3004 CONECT 3010 3005 CONECT 3011 3008 3012 3020 CONECT 3012 3011 3013 3017 CONECT 3013 3012 3014 3018 CONECT 3014 3013 3015 3019 CONECT 3015 3014 3016 3020 CONECT 3016 3015 3021 CONECT 3017 3012 CONECT 3018 3013 CONECT 3019 3014 CONECT 3020 3011 3015 CONECT 3021 3016 CONECT 3022 3023 3028 3032 CONECT 3023 3022 3024 3029 CONECT 3024 3023 3025 3030 CONECT 3025 3024 3026 3031 CONECT 3026 3025 3027 3032 CONECT 3027 3026 3033 CONECT 3028 3022 CONECT 3029 3023 CONECT 3030 3024 CONECT 3031 3025 3034 CONECT 3032 3022 3026 CONECT 3033 3027 CONECT 3034 3031 3035 3043 CONECT 3035 3034 3036 3040 CONECT 3036 3035 3037 3041 CONECT 3037 3036 3038 3042 CONECT 3038 3037 3039 3043 CONECT 3039 3038 3044 CONECT 3040 3035 CONECT 3041 3036 CONECT 3042 3037 3045 CONECT 3043 3034 3038 CONECT 3044 3039 CONECT 3045 3042 3046 3054 CONECT 3046 3045 3047 3051 CONECT 3047 3046 3048 3052 CONECT 3048 3047 3049 3053 CONECT 3049 3048 3050 3054 CONECT 3050 3049 3055 CONECT 3051 3046 CONECT 3052 3047 CONECT 3053 3048 3056 CONECT 3054 3045 3049 CONECT 3055 3050 CONECT 3056 3053 3057 3065 CONECT 3057 3056 3058 3062 CONECT 3058 3057 3059 3063 CONECT 3059 3058 3060 3064 CONECT 3060 3059 3061 3065 CONECT 3061 3060 3066 CONECT 3062 3057 CONECT 3063 3058 CONECT 3064 3059 3067 CONECT 3065 3056 3060 CONECT 3066 3061 CONECT 3067 3064 3068 3076 CONECT 3068 3067 3069 3073 CONECT 3069 3068 3070 3074 CONECT 3070 3069 3071 3075 CONECT 3071 3070 3072 3076 CONECT 3072 3071 3077 CONECT 3073 3068 CONECT 3074 3069 CONECT 3075 3070 CONECT 3076 3067 3071 CONECT 3077 3072 MASTER 424 0 10 16 13 0 0 6 3191 1 112 30 END