HEADER TOXIN 27-FEB-25 9M2K TITLE TYPE I PQQ-DEPENDENT ALCOHOL DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PQQ-BINDING-LIKE BETA-PROPELLER REPEAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARADEVOSIA TIBETENSIS; SOURCE 3 ORGANISM_TAXID: 1447062; SOURCE 4 GENE: FNA67_03370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEOXYNIVALENOL, DEHYDROGENASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,W.M.MU,W.XU REVDAT 1 04-MAR-26 9M2K 0 JRNL AUTH Y.SHI,W.M.MU,W.XU JRNL TITL PQQ-DEPENDENT DEHYDROGENASE ABLE TO DETOXIFY DON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1174 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : -4.09000 REMARK 3 B33 (A**2) : 3.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4384 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3950 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5994 ; 1.280 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9085 ; 0.770 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 6.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;34.884 ;24.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;13.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5090 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1005 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2231 ; 0.264 ; 2.061 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2230 ; 0.264 ; 2.061 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2787 ; 0.465 ; 3.091 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2788 ; 0.465 ; 3.091 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 0.233 ; 2.115 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2153 ; 0.233 ; 2.117 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3205 ; 0.408 ; 3.172 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4997 ; 1.326 ;24.145 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4997 ; 1.323 ;24.155 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3470 26.2645 32.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0755 REMARK 3 T33: 0.2668 T12: 0.0059 REMARK 3 T13: 0.0199 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 2.9921 L22: 4.1108 REMARK 3 L33: 0.6896 L12: 1.2463 REMARK 3 L13: 0.5306 L23: -0.7065 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.2547 S13: 0.4163 REMARK 3 S21: 0.0966 S22: 0.0139 S23: 0.1008 REMARK 3 S31: -0.0957 S32: -0.0381 S33: 0.0218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5298 15.9054 35.6937 REMARK 3 T TENSOR REMARK 3 T11: 0.0437 T22: 0.0799 REMARK 3 T33: 0.2118 T12: -0.0241 REMARK 3 T13: 0.0432 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 2.1105 L22: 0.0962 REMARK 3 L33: 1.7875 L12: -0.2807 REMARK 3 L13: 0.2712 L23: -0.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: -0.2701 S13: 0.4346 REMARK 3 S21: 0.0167 S22: -0.0066 S23: -0.0971 REMARK 3 S31: -0.0063 S32: 0.0025 S33: 0.0785 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3853 2.9553 35.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.1348 REMARK 3 T33: 0.0764 T12: -0.0384 REMARK 3 T13: 0.0562 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.3259 L22: 2.8494 REMARK 3 L33: 3.1526 L12: -0.4473 REMARK 3 L13: -0.0354 L23: 0.8848 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: -0.5005 S13: 0.1653 REMARK 3 S21: 0.2711 S22: 0.0553 S23: 0.0257 REMARK 3 S31: 0.1620 S32: 0.2166 S33: -0.1723 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7750 2.5042 24.0507 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0711 REMARK 3 T33: 0.1276 T12: -0.0422 REMARK 3 T13: 0.0770 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.5603 L22: 1.2387 REMARK 3 L33: 1.8819 L12: -0.5826 REMARK 3 L13: 0.3376 L23: 0.1511 REMARK 3 S TENSOR REMARK 3 S11: 0.1189 S12: -0.1912 S13: 0.1213 REMARK 3 S21: 0.1087 S22: -0.0764 S23: 0.2269 REMARK 3 S31: 0.1216 S32: -0.2914 S33: -0.0425 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4213 12.4727 9.1104 REMARK 3 T TENSOR REMARK 3 T11: 0.0882 T22: 0.0800 REMARK 3 T33: 0.1984 T12: 0.0143 REMARK 3 T13: 0.0589 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 0.8273 L22: 1.0997 REMARK 3 L33: 0.6641 L12: 0.2260 REMARK 3 L13: 0.6491 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0708 S13: 0.2508 REMARK 3 S21: -0.2254 S22: -0.1122 S23: 0.0105 REMARK 3 S31: 0.0430 S32: -0.0043 S33: 0.0938 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4580 23.4022 11.9041 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0705 REMARK 3 T33: 0.3842 T12: 0.0074 REMARK 3 T13: 0.0587 T23: 0.1239 REMARK 3 L TENSOR REMARK 3 L11: 1.3199 L22: 0.7507 REMARK 3 L33: 0.6992 L12: -0.2494 REMARK 3 L13: 0.4905 L23: 0.1552 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.2627 S13: 0.6041 REMARK 3 S21: -0.1064 S22: -0.1190 S23: -0.0239 REMARK 3 S31: -0.0942 S32: 0.0043 S33: 0.1449 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 545 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3608 18.4939 23.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0074 REMARK 3 T33: 0.2576 T12: -0.0013 REMARK 3 T13: 0.0849 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.2446 L22: 0.3379 REMARK 3 L33: 1.7941 L12: -0.0335 REMARK 3 L13: 0.3658 L23: -0.7696 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.0010 S13: 0.4507 REMARK 3 S21: 0.0039 S22: -0.0401 S23: 0.0046 REMARK 3 S31: -0.0237 S32: 0.0946 S33: 0.0287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9M2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : APEX REMARK 200 DATA SCALING SOFTWARE : APEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 38.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, IMIDAZOLE, PEGMME5000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.72700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.44150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.72700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.44150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 HIS A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 GLN A 38 REMARK 465 SER A 39 REMARK 465 ALA A 40 REMARK 465 ILE A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 601 REMARK 465 LYS A 602 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 327 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 116 37.66 74.33 REMARK 500 VAL A 190 -103.73 55.36 REMARK 500 ASP A 204 56.20 29.95 REMARK 500 CYS A 220 -151.25 -130.99 REMARK 500 MET A 260 -19.44 85.50 REMARK 500 ALA A 263 62.62 -152.23 REMARK 500 LEU A 298 76.97 61.09 REMARK 500 TRP A 326 22.60 -144.51 REMARK 500 GLU A 329 77.63 44.51 REMARK 500 CYS A 330 49.32 -80.50 REMARK 500 ASN A 342 55.57 -149.41 REMARK 500 SER A 352 171.20 -35.05 REMARK 500 THR A 373 -38.52 -39.34 REMARK 500 THR A 392 -81.13 -114.42 REMARK 500 PRO A 426 -104.90 -91.73 REMARK 500 ASP A 433 -155.80 -155.27 REMARK 500 VAL A 469 -103.82 67.29 REMARK 500 LEU A 508 -62.89 -98.07 REMARK 500 ASP A 526 38.58 -95.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 329 OE1 REMARK 620 2 TYR A 470 OH 96.7 REMARK 620 3 PQQ A 701 O5 96.6 117.9 REMARK 620 4 PQQ A 701 O7A 80.6 109.3 132.6 REMARK 620 N 1 2 3 DBREF1 9M2K A 2 602 UNP A0A5B9DJI2_9HYPH DBREF2 9M2K A A0A5B9DJI2 7 607 SEQADV 9M2K MET A 1 UNP A0A5B9DJI INITIATING METHIONINE SEQRES 1 A 602 MET ARG GLN ASN VAL VAL GLY LEU ALA LEU SER THR ALA SEQRES 2 A 602 LEU ILE ALA SER LEU SER ALA PRO ALA PHE ALA GLN HIS SEQRES 3 A 602 ALA ASP GLY ALA ALA THR GLU ALA ALA SER ALA GLN SER SEQRES 4 A 602 ALA ILE GLU ASN PHE LYS PRO VAL THR ALA ASP ASP LEU SEQRES 5 A 602 ALA GLY ALA ASN SER ALA ASN TRP PRO ILE LEU ARG GLY SEQRES 6 A 602 ASN TYR GLN GLY TRP GLY TYR THR PRO LEU ASP GLN ILE SEQRES 7 A 602 ASN LYS ASP ASN VAL GLY GLN LEU GLN LEU ALA TRP SER SEQRES 8 A 602 ARG THR MET GLU PRO GLY SER ASN GLU GLY ALA ALA ILE SEQRES 9 A 602 ALA TYR ASN GLY VAL VAL TYR LEU GLY ASN ALA ASN ASP SEQRES 10 A 602 VAL ILE GLN ALA ILE ASP GLY LYS THR GLY ASP LEU ILE SEQRES 11 A 602 TRP GLU TYR ARG ARG LYS LEU PRO PRO ALA SER LYS PHE SEQRES 12 A 602 ILE ASN SER LEU GLY GLN ALA LYS ARG SER ILE ALA LEU SEQRES 13 A 602 PHE GLY ASP LYS VAL TYR PHE VAL SER TRP ASP ASN PHE SEQRES 14 A 602 VAL VAL ALA LEU ASP ALA LYS THR GLY LYS LEU ALA TRP SEQRES 15 A 602 GLU THR ASN ARG GLY GLN GLY VAL GLU GLU GLY VAL SER SEQRES 16 A 602 ASN SER SER GLY PRO ILE VAL VAL ASP GLY VAL VAL ILE SEQRES 17 A 602 ALA GLY SER THR CYS GLN PHE SER GLY PHE GLY CYS TYR SEQRES 18 A 602 VAL THR GLY THR ASP ALA GLU SER GLY GLU GLU LEU TRP SEQRES 19 A 602 ARG ASN THR PHE ILE PRO ARG PRO GLY GLU GLU GLY ASP SEQRES 20 A 602 ASP THR TRP GLY GLY ALA PRO TYR GLU ASN ARG TRP MET SEQRES 21 A 602 THR GLY ALA TRP GLY GLN ILE THR TYR ASP PRO GLU LEU SEQRES 22 A 602 ASP LEU VAL TYR TYR GLY SER THR GLY ALA GLY PRO ALA SEQRES 23 A 602 SER GLU VAL GLN ARG GLY THR GLU GLY GLY THR LEU ALA SEQRES 24 A 602 GLY THR ASN THR ARG PHE ALA VAL LYS PRO LYS THR GLY SEQRES 25 A 602 GLU VAL VAL TRP LYS HIS GLN THR LEU PRO ARG ASP ASN SEQRES 26 A 602 TRP ASP GLN GLU CYS THR PHE GLU MET MET VAL VAL SER SEQRES 27 A 602 THR THR VAL ASN PRO ASN ALA ASP ALA ASP GLY MET PHE SEQRES 28 A 602 SER VAL GLY ALA THR LEU PRO ARG GLY GLU THR ARG LYS SEQRES 29 A 602 VAL LEU THR GLY VAL PRO CYS LYS THR GLY VAL ALA TRP SEQRES 30 A 602 GLN PHE ASP ALA GLU THR GLY ASP TYR PHE TRP SER LYS SEQRES 31 A 602 ALA THR VAL ALA GLN ASN ALA VAL ALA SER ILE ASP ASP SEQRES 32 A 602 LYS GLY LEU VAL THR VAL ASN GLU ASP MET ILE LEU LYS SEQRES 33 A 602 GLU PRO GLY LYS ASN TYR ASP PHE CYS PRO THR PHE LEU SEQRES 34 A 602 GLY GLY ARG ASP TRP PRO SER ALA GLY TYR LEU PRO ALA SEQRES 35 A 602 SER ASN LEU TYR VAL ILE PRO LEU SER ASN ALA CYS TYR SEQRES 36 A 602 ASP LEU THR ALA ARG THR THR GLU ALA THR PRO ALA ASP SEQRES 37 A 602 VAL TYR ASN THR ASP ALA THR VAL LYS LEU ALA PRO GLY SEQRES 38 A 602 LYS THR ASN MET GLY ARG VAL ASP ALA ILE ASP LEU ALA SEQRES 39 A 602 THR GLY GLU THR LYS TRP SER PHE GLU THR THR ALA ALA SEQRES 40 A 602 LEU TYR ASP PRO VAL MET THR THR GLY GLY ASP LEU VAL SEQRES 41 A 602 PHE VAL GLY SER THR ASP ARG VAL PHE ARG ALA LEU ASP SEQRES 42 A 602 ALA ALA THR GLY LYS GLU VAL TRP SER THR ARG LEU PRO SEQRES 43 A 602 GLY ALA ILE SER GLY TYR THR THR SER TYR SER ILE ASP SEQRES 44 A 602 GLY ARG GLN TYR VAL ALA VAL VAL ALA GLY GLY SER LEU SEQRES 45 A 602 GLY THR SER PHE PHE LYS ALA ALA VAL PRO ASN VAL ASP SEQRES 46 A 602 ALA VAL GLN GLY GLY ASN GLY ILE TYR VAL PHE ALA LEU SEQRES 47 A 602 PRO GLU ALA LYS HET PQQ A 701 24 HET B2S A 702 21 HET CA A 703 1 HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM B2S (3ALPHA,7ALPHA)-3,7,15-TRIHYDROXY-12,13- HETNAM 2 B2S EPOXYTRICHOTHEC-9-EN-8-ONE HETNAM CA CALCIUM ION FORMUL 2 PQQ C14 H6 N2 O8 FORMUL 3 B2S C15 H20 O6 FORMUL 4 CA CA 2+ FORMUL 5 HOH *30(H2 O) HELIX 1 AA1 THR A 48 ALA A 53 1 6 HELIX 2 AA2 ASN A 82 LEU A 86 5 5 HELIX 3 AA3 PRO A 139 PHE A 143 5 5 HELIX 4 AA4 ASN A 145 ALA A 150 5 6 HELIX 5 AA5 GLY A 189 GLY A 193 5 5 HELIX 6 AA6 GLY A 246 TRP A 250 5 5 HELIX 7 AA7 PRO A 254 ARG A 258 5 5 HELIX 8 AA8 SER A 287 GLY A 292 1 6 HELIX 9 AA9 GLU A 411 ILE A 414 5 4 HELIX 10 AB1 THR A 465 VAL A 469 5 5 SHEET 1 AA1 5 TYR A 72 THR A 73 0 SHEET 2 AA1 5 VAL A 512 THR A 515 1 O THR A 514 N THR A 73 SHEET 3 AA1 5 LEU A 519 GLY A 523 -1 O PHE A 521 N MET A 513 SHEET 4 AA1 5 VAL A 528 ASP A 533 -1 O LEU A 532 N VAL A 520 SHEET 5 AA1 5 GLU A 539 ARG A 544 -1 O THR A 543 N PHE A 529 SHEET 1 AA2 4 GLN A 87 THR A 93 0 SHEET 2 AA2 4 GLY A 592 ALA A 597 -1 O VAL A 595 N TRP A 90 SHEET 3 AA2 4 ARG A 561 GLY A 569 -1 N VAL A 566 O TYR A 594 SHEET 4 AA2 4 ALA A 548 ILE A 558 -1 N THR A 554 O ALA A 565 SHEET 1 AA3 4 ALA A 103 TYR A 106 0 SHEET 2 AA3 4 VAL A 109 GLY A 113 -1 O VAL A 109 N TYR A 106 SHEET 3 AA3 4 VAL A 118 ASP A 123 -1 O ILE A 122 N VAL A 110 SHEET 4 AA3 4 LEU A 129 ARG A 134 -1 O ILE A 130 N ALA A 121 SHEET 1 AA4 4 ALA A 155 PHE A 157 0 SHEET 2 AA4 4 LYS A 160 VAL A 164 -1 O TYR A 162 N ALA A 155 SHEET 3 AA4 4 PHE A 169 ASP A 174 -1 O VAL A 171 N PHE A 163 SHEET 4 AA4 4 LEU A 180 ASN A 185 -1 O ALA A 181 N ALA A 172 SHEET 1 AA5 4 ILE A 201 VAL A 203 0 SHEET 2 AA5 4 VAL A 206 ALA A 209 -1 O ILE A 208 N ILE A 201 SHEET 3 AA5 4 TYR A 221 ASP A 226 -1 O THR A 225 N VAL A 207 SHEET 4 AA5 4 GLU A 232 THR A 237 -1 O LEU A 233 N GLY A 224 SHEET 1 AA6 4 THR A 268 ASP A 270 0 SHEET 2 AA6 4 LEU A 275 GLY A 279 -1 O TYR A 277 N THR A 268 SHEET 3 AA6 4 THR A 303 VAL A 307 -1 O VAL A 307 N VAL A 276 SHEET 4 AA6 4 VAL A 314 GLN A 319 -1 O HIS A 318 N ARG A 304 SHEET 1 AA7 5 MET A 335 THR A 340 0 SHEET 2 AA7 5 THR A 362 GLY A 368 -1 O VAL A 365 N VAL A 337 SHEET 3 AA7 5 ALA A 376 ASP A 380 -1 O TRP A 377 N GLY A 368 SHEET 4 AA7 5 TYR A 386 LYS A 390 -1 O LYS A 390 N ALA A 376 SHEET 5 AA7 5 MET A 350 VAL A 353 -1 N PHE A 351 O SER A 389 SHEET 1 AA8 2 VAL A 398 ILE A 401 0 SHEET 2 AA8 2 VAL A 407 VAL A 409 -1 O THR A 408 N SER A 400 SHEET 1 AA9 3 ASN A 421 PHE A 424 0 SHEET 2 AA9 3 ALA A 453 ALA A 459 -1 O TYR A 455 N PHE A 424 SHEET 3 AA9 3 THR A 472 LEU A 478 -1 O LYS A 477 N CYS A 454 SHEET 1 AB1 4 GLY A 438 LEU A 440 0 SHEET 2 AB1 4 LEU A 445 SER A 451 -1 O VAL A 447 N GLY A 438 SHEET 3 AB1 4 GLY A 486 ASP A 492 -1 O ILE A 491 N TYR A 446 SHEET 4 AB1 4 THR A 498 THR A 504 -1 O TRP A 500 N ALA A 490 SSBOND 1 CYS A 213 CYS A 220 1555 1555 2.04 SSBOND 2 CYS A 330 CYS A 371 1555 1555 2.03 SSBOND 3 CYS A 425 CYS A 454 1555 1555 2.02 LINK OE1 GLU A 329 CA CA A 703 1555 1555 2.31 LINK OH TYR A 470 CA CA A 703 1555 1555 2.33 LINK O5 PQQ A 701 CA CA A 703 1555 1555 2.33 LINK O7A PQQ A 701 CA CA A 703 1555 1555 2.34 CISPEP 1 GLY A 284 PRO A 285 0 -0.62 CISPEP 2 CYS A 425 PRO A 426 0 0.81 CISPEP 3 GLY A 430 GLY A 431 0 8.33 CRYST1 107.454 94.883 58.461 90.00 105.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009306 0.000000 0.002494 0.00000 SCALE2 0.000000 0.010539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017709 0.00000 CONECT 1299 1350 CONECT 1350 1299 CONECT 2201 4269 CONECT 2208 2505 CONECT 2505 2208 CONECT 2926 3143 CONECT 3143 2926 CONECT 3268 4269 CONECT 4224 4225 4231 CONECT 4225 4224 4226 4229 CONECT 4226 4225 4227 4228 CONECT 4227 4226 CONECT 4228 4226 CONECT 4229 4225 4230 CONECT 4230 4229 4231 4232 CONECT 4231 4224 4230 4247 CONECT 4232 4230 4233 4234 CONECT 4233 4232 CONECT 4234 4232 4235 4236 CONECT 4235 4234 4269 CONECT 4236 4234 4237 4247 CONECT 4237 4236 4238 CONECT 4238 4237 4239 4242 CONECT 4239 4238 4240 4241 CONECT 4240 4239 4269 CONECT 4241 4239 CONECT 4242 4238 4243 CONECT 4243 4242 4244 4247 CONECT 4244 4243 4245 4246 CONECT 4245 4244 CONECT 4246 4244 CONECT 4247 4231 4236 4243 CONECT 4248 4249 4250 CONECT 4249 4248 4250 CONECT 4250 4248 4249 4251 4256 CONECT 4251 4250 4252 4253 4266 CONECT 4252 4251 CONECT 4253 4251 4254 CONECT 4254 4253 4255 4256 CONECT 4255 4254 CONECT 4256 4250 4254 4257 CONECT 4257 4256 4258 CONECT 4258 4257 4259 4266 CONECT 4259 4258 4260 CONECT 4260 4259 4261 4262 CONECT 4261 4260 CONECT 4262 4260 4263 4264 CONECT 4263 4262 CONECT 4264 4262 4265 4266 CONECT 4265 4264 CONECT 4266 4251 4258 4264 4267 CONECT 4267 4266 4268 CONECT 4268 4267 CONECT 4269 2201 3268 4235 4240 MASTER 472 0 3 10 39 0 0 6 4298 1 54 47 END