HEADER PLANT PROTEIN 01-MAR-25 9M3E TITLE CAROTENOID CLEAVAGE DIOXYGENASE 1 VARIANT FROM OSMANTHUS FRAGRANS TITLE 2 A191G E408Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAROTENOID 9,10-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSMANTHUS FRAGRANS; SOURCE 3 ORGANISM_TAXID: 93977; SOURCE 4 GENE: CCD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOSYNTHESIS OF IONONE, CCD1, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SHARMA,B.XUE REVDAT 1 04-MAR-26 9M3E 0 JRNL AUTH D.SHARMA,B.XUE,E.ESQUE,S.BOZONNET,J.S.ONG,W.S.YEW, JRNL AUTH 2 M.REMAUD-SIMEON,I.ANDRE,X.CHEN JRNL TITL STRUCTURE-BASED ENZYME ENGINEERING OF CCD1 TO IMPROVE JRNL TITL 2 SUBSTRATE SPECIFICITY FOR BETA-IONONE BIOSYNTHESIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4500 - 6.6700 1.00 3008 175 0.1904 0.2195 REMARK 3 2 6.6600 - 5.2900 1.00 2841 140 0.1928 0.2062 REMARK 3 3 5.2900 - 4.6200 1.00 2826 128 0.1475 0.1807 REMARK 3 4 4.6200 - 4.2000 1.00 2760 145 0.1399 0.1441 REMARK 3 5 4.2000 - 3.9000 1.00 2756 151 0.1572 0.1766 REMARK 3 6 3.9000 - 3.6700 1.00 2757 130 0.1532 0.1877 REMARK 3 7 3.6700 - 3.4900 1.00 2737 150 0.1698 0.2259 REMARK 3 8 3.4900 - 3.3400 1.00 2740 127 0.1743 0.2139 REMARK 3 9 3.3400 - 3.2100 1.00 2745 129 0.1846 0.1822 REMARK 3 10 3.2100 - 3.1000 1.00 2726 144 0.1934 0.1976 REMARK 3 11 3.1000 - 3.0000 1.00 2700 144 0.1975 0.2241 REMARK 3 12 3.0000 - 2.9100 1.00 2668 159 0.2095 0.3055 REMARK 3 13 2.9100 - 2.8400 1.00 2727 143 0.2220 0.2580 REMARK 3 14 2.8400 - 2.7700 1.00 2708 145 0.2306 0.2524 REMARK 3 15 2.7700 - 2.7100 1.00 2708 134 0.2334 0.2868 REMARK 3 16 2.7000 - 2.6500 1.00 2678 149 0.2564 0.3183 REMARK 3 17 2.6500 - 2.5900 1.00 2702 145 0.2714 0.3429 REMARK 3 18 2.5900 - 2.5500 1.00 2693 136 0.2817 0.3037 REMARK 3 19 2.5500 - 2.5000 1.00 2699 138 0.2899 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4475 REMARK 3 ANGLE : 0.985 6059 REMARK 3 CHIRALITY : 0.059 643 REMARK 3 PLANARITY : 0.007 771 REMARK 3 DIHEDRAL : 13.900 1682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300056512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 98.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 82.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH 7.5, (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.90100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 104.90100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.90100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 104.90100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 104.90100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 104.90100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 104.90100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 104.90100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 104.90100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 104.90100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 104.90100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 104.90100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 104.90100 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 157.35150 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.45050 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 157.35150 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 157.35150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 157.35150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.45050 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 157.35150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.45050 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 157.35150 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 52.45050 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 157.35150 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 52.45050 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 52.45050 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 157.35150 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 52.45050 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 157.35150 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 157.35150 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 157.35150 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 52.45050 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 157.35150 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 157.35150 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 52.45050 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 52.45050 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 52.45050 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 157.35150 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 52.45050 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 157.35150 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 52.45050 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 157.35150 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 157.35150 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 157.35150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 542 REMARK 465 VAL A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 42.01 -93.28 REMARK 500 ASN A 87 78.73 -161.92 REMARK 500 ALA A 94 -102.57 -145.67 REMARK 500 MET A 137 -43.38 -131.32 REMARK 500 ASN A 341 163.47 179.70 REMARK 500 THR A 367 15.64 -60.76 REMARK 500 VAL A 368 -104.06 49.05 REMARK 500 LYS A 369 -170.81 62.13 REMARK 500 ALA A 400 38.50 98.21 REMARK 500 THR A 412 -0.30 76.11 REMARK 500 ILE A 426 -47.43 67.96 REMARK 500 LYS A 447 147.42 -171.73 REMARK 500 PHE A 527 -120.96 -107.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OXN A 601 REMARK 610 OXN A 602 REMARK 610 OXN A 603 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 604 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HIS A 272 NE2 90.4 REMARK 620 3 HIS A 338 NE2 103.6 96.0 REMARK 620 4 HIS A 528 NE2 94.0 166.6 95.2 REMARK 620 5 HOH A 760 O 154.2 83.4 102.0 87.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9LUZ RELATED DB: PDB DBREF 9M3E A 1 543 UNP D4QE74 D4QE74_9LAMI 1 543 SEQADV 9M3E GLY A 191 UNP D4QE74 ALA 191 ENGINEERED MUTATION SEQADV 9M3E GLN A 408 UNP D4QE74 GLU 408 ENGINEERED MUTATION SEQRES 1 A 543 MET GLY MET GLN GLY GLU ASP ALA GLN ARG THR GLY ASN SEQRES 2 A 543 ILE VAL ALA VAL LYS PRO LYS PRO SER GLN GLY LEU THR SEQRES 3 A 543 SER LYS ALA ILE ASP TRP LEU GLU TRP LEU PHE VAL LYS SEQRES 4 A 543 MET MET HIS ASP SER LYS GLN PRO LEU HIS TYR LEU SER SEQRES 5 A 543 GLY ASN PHE ALA PRO VAL ASP GLU THR PRO PRO LEU LYS SEQRES 6 A 543 ASP LEU PRO VAL THR GLY HIS LEU PRO GLU CYS LEU ASN SEQRES 7 A 543 GLY GLU PHE VAL ARG VAL GLY PRO ASN PRO LYS PHE ALA SEQRES 8 A 543 SER ILE ALA GLY TYR HIS TRP PHE ASP GLY ASP GLY MET SEQRES 9 A 543 ILE HIS GLY MET ARG ILE LYS ASP GLY LYS ALA THR TYR SEQRES 10 A 543 VAL SER ARG TYR VAL GLN THR SER ARG LEU LYS GLN GLU SEQRES 11 A 543 GLU PHE PHE GLY ARG ALA MET PHE MET LYS ILE GLY ASP SEQRES 12 A 543 LEU LYS GLY MET PHE GLY LEU LEU MET VAL ASN MET GLN SEQRES 13 A 543 MET LEU ARG ALA LYS LEU LYS VAL LEU ASP ILE SER TYR SEQRES 14 A 543 GLY ILE GLY THR ALA ASN THR ALA LEU VAL TYR HIS HIS SEQRES 15 A 543 GLY LYS LEU LEU ALA LEU SER GLU GLY ASP LYS PRO TYR SEQRES 16 A 543 ALA ILE LYS VAL LEU GLU ASP GLY ASP LEU GLN THR ILE SEQRES 17 A 543 GLY LEU LEU ASP TYR ASP LYS ARG LEU ALA HIS SER PHE SEQRES 18 A 543 THR ALA HIS PRO LYS VAL ASP PRO PHE THR GLY GLU MET SEQRES 19 A 543 PHE THR PHE GLY TYR SER HIS THR PRO PRO TYR VAL THR SEQRES 20 A 543 TYR ARG VAL ILE SER LYS ASP GLY ALA MET ASN ASP PRO SEQRES 21 A 543 VAL PRO ILE THR VAL SER GLY PRO ILE MET MET HIS ASP SEQRES 22 A 543 PHE ALA ILE THR GLU ASN TYR ALA ILE PHE MET ASP LEU SEQRES 23 A 543 PRO LEU TYR PHE LYS PRO LYS GLU MET VAL LYS ASP LYS SEQRES 24 A 543 LYS PHE ILE PHE SER PHE ASP ALA THR GLN LYS ALA ARG SEQRES 25 A 543 PHE GLY ILE LEU PRO ARG TYR ALA LYS ASN GLU LEU LEU SEQRES 26 A 543 ILE LYS TRP PHE GLU LEU PRO ASN CYS PHE ILE PHE HIS SEQRES 27 A 543 ASN ALA ASN ALA TRP GLU GLU GLY ASP GLU VAL VAL LEU SEQRES 28 A 543 ILE THR CYS ARG LEU GLU ASN PRO ASP LEU ASP MET VAL SEQRES 29 A 543 ASN SER THR VAL LYS GLU ARG LEU ASP ASN PHE LYS ASN SEQRES 30 A 543 GLU LEU TYR GLU MET ARG PHE ASN LEU GLN ASN GLY LEU SEQRES 31 A 543 ALA SER GLN LYS LYS LEU SER VAL SER ALA VAL ASP PHE SEQRES 32 A 543 PRO ARG VAL ASN GLN SER TYR THR THR ARG LYS GLN ARG SEQRES 33 A 543 TYR VAL TYR GLY THR THR LEU ASP LYS ILE ALA LYS VAL SEQRES 34 A 543 THR GLY ILE ILE LYS PHE ASP LEU HIS ALA GLU PRO GLU SEQRES 35 A 543 THR GLY LYS GLU LYS LEU GLU LEU GLY GLY ASN VAL LYS SEQRES 36 A 543 GLY ILE PHE ASP LEU GLY PRO GLY ARG PHE GLY SER GLU SEQRES 37 A 543 ALA VAL PHE VAL PRO ARG HIS PRO GLY ILE THR SER GLU SEQRES 38 A 543 GLU ASP ASP GLY TYR LEU ILE PHE PHE VAL HIS ASP GLU SEQRES 39 A 543 ASN THR GLY LYS SER ALA VAL ASN VAL ILE ASP ALA LYS SEQRES 40 A 543 THR MET SER PRO ASP PRO VAL ALA VAL VAL GLU LEU PRO SEQRES 41 A 543 LYS ARG VAL PRO TYR GLY PHE HIS ALA PHE PHE VAL THR SEQRES 42 A 543 GLU ASP GLN LEU GLN GLU GLN ALA LYS VAL HET OXN A 601 24 HET OXN A 602 24 HET OXN A 603 24 HET NI A 604 1 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HETNAM OXN OXTOXYNOL-10 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETSYN OXN ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA- HETSYN 2 OXN HYDROXYPOLY(OXY-1,2-ETHANEDIYL); TRITON X-100 FORMUL 2 OXN 3(C34 H62 O11) FORMUL 5 NI NI 2+ FORMUL 6 SO4 6(O4 S 2-) FORMUL 12 HOH *242(H2 O) HELIX 1 AA1 GLY A 24 HIS A 42 1 19 HELIX 2 AA2 LEU A 48 ALA A 56 5 9 HELIX 3 AA3 PRO A 74 LEU A 77 5 4 HELIX 4 AA4 HIS A 97 GLY A 101 5 5 HELIX 5 AA5 THR A 124 GLY A 134 1 11 HELIX 6 AA6 LYS A 140 LEU A 144 5 5 HELIX 7 AA7 LYS A 145 LEU A 162 1 18 HELIX 8 AA8 LYS A 291 ASP A 298 1 8 HELIX 9 AA9 ASP A 360 ASN A 365 5 6 HELIX 10 AB1 ASN A 407 THR A 411 5 5 HELIX 11 AB2 GLU A 534 ALA A 541 1 8 SHEET 1 AA1 6 ARG A 10 THR A 11 0 SHEET 2 AA1 6 ILE A 14 VAL A 15 -1 O ILE A 14 N THR A 11 SHEET 3 AA1 6 LEU A 205 LEU A 211 -1 O LEU A 210 N VAL A 15 SHEET 4 AA1 6 TYR A 195 VAL A 199 -1 N LYS A 198 O GLN A 206 SHEET 5 AA1 6 LYS A 184 LEU A 188 -1 N LEU A 185 O ILE A 197 SHEET 6 AA1 6 ALA A 177 HIS A 181 -1 N VAL A 179 O LEU A 186 SHEET 1 AA2 5 THR A 61 LEU A 64 0 SHEET 2 AA2 5 LYS A 114 TYR A 121 -1 O TYR A 117 N LEU A 64 SHEET 3 AA2 5 GLY A 103 LYS A 111 -1 N GLY A 107 O VAL A 118 SHEET 4 AA2 5 GLY A 79 PRO A 86 -1 N GLY A 79 O ILE A 110 SHEET 5 AA2 5 ALA A 529 THR A 533 -1 O VAL A 532 N GLU A 80 SHEET 1 AA3 5 VAL A 69 GLY A 71 0 SHEET 2 AA3 5 ALA A 515 LEU A 519 -1 O VAL A 516 N THR A 70 SHEET 3 AA3 5 SER A 499 ASP A 505 -1 N VAL A 503 O ALA A 515 SHEET 4 AA3 5 GLY A 485 ASP A 493 -1 N PHE A 489 O ASN A 502 SHEET 5 AA3 5 ARG A 464 GLY A 466 -1 N PHE A 465 O HIS A 492 SHEET 1 AA4 5 VAL A 69 GLY A 71 0 SHEET 2 AA4 5 ALA A 515 LEU A 519 -1 O VAL A 516 N THR A 70 SHEET 3 AA4 5 SER A 499 ASP A 505 -1 N VAL A 503 O ALA A 515 SHEET 4 AA4 5 GLY A 485 ASP A 493 -1 N PHE A 489 O ASN A 502 SHEET 5 AA4 5 VAL A 470 PRO A 473 -1 N VAL A 472 O TYR A 486 SHEET 1 AA5 4 LYS A 226 VAL A 227 0 SHEET 2 AA5 4 MET A 234 TYR A 239 -1 O PHE A 235 N LYS A 226 SHEET 3 AA5 4 VAL A 246 ILE A 251 -1 O ILE A 251 N MET A 234 SHEET 4 AA5 4 VAL A 261 ILE A 263 -1 O VAL A 261 N TYR A 248 SHEET 1 AA6 4 ALA A 275 ILE A 276 0 SHEET 2 AA6 4 TYR A 280 ASP A 285 -1 O ILE A 282 N ALA A 275 SHEET 3 AA6 4 ALA A 311 PRO A 317 -1 O GLY A 314 N PHE A 283 SHEET 4 AA6 4 LYS A 327 LEU A 331 -1 O LYS A 327 N ILE A 315 SHEET 1 AA7 2 LEU A 288 PHE A 290 0 SHEET 2 AA7 2 PHE A 303 PHE A 305 -1 O SER A 304 N TYR A 289 SHEET 1 AA8 4 PHE A 335 GLU A 345 0 SHEET 2 AA8 4 GLU A 348 LEU A 356 -1 O VAL A 350 N TRP A 343 SHEET 3 AA8 4 GLU A 378 ASN A 385 -1 O MET A 382 N LEU A 351 SHEET 4 AA8 4 ALA A 391 LYS A 395 -1 O SER A 392 N ARG A 383 SHEET 1 AA9 4 VAL A 401 ARG A 405 0 SHEET 2 AA9 4 TYR A 417 ASP A 424 -1 O TYR A 419 N ARG A 405 SHEET 3 AA9 4 LYS A 428 ASP A 436 -1 O PHE A 435 N VAL A 418 SHEET 4 AA9 4 VAL A 454 ASP A 459 -1 O PHE A 458 N ILE A 432 LINK NE2 HIS A 224 NI NI A 604 1555 1555 2.07 LINK NE2 HIS A 272 NI NI A 604 1555 1555 2.24 LINK NE2 HIS A 338 NI NI A 604 1555 1555 2.12 LINK NE2 HIS A 528 NI NI A 604 1555 1555 2.05 LINK NI NI A 604 O HOH A 760 1555 1555 2.15 CISPEP 1 PRO A 243 PRO A 244 0 -4.12 CRYST1 209.802 209.802 209.802 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004766 0.00000 CONECT 1714 4340 CONECT 2087 4340 CONECT 2654 4340 CONECT 4159 4340 CONECT 4268 4269 4273 CONECT 4269 4268 4270 4271 4272 CONECT 4270 4269 CONECT 4271 4269 CONECT 4272 4269 CONECT 4273 4268 4274 4275 4276 CONECT 4274 4273 4277 4281 CONECT 4275 4273 CONECT 4276 4273 CONECT 4277 4274 4278 CONECT 4278 4277 4279 CONECT 4279 4278 4280 4282 CONECT 4280 4279 4281 CONECT 4281 4274 4280 CONECT 4282 4279 4283 CONECT 4283 4282 4284 CONECT 4284 4283 4285 CONECT 4285 4284 4286 CONECT 4286 4285 4287 CONECT 4287 4286 4288 CONECT 4288 4287 4289 CONECT 4289 4288 4290 CONECT 4290 4289 4291 CONECT 4291 4290 CONECT 4292 4293 4297 CONECT 4293 4292 4294 4295 4296 CONECT 4294 4293 CONECT 4295 4293 CONECT 4296 4293 CONECT 4297 4292 4298 4299 4300 CONECT 4298 4297 4301 4305 CONECT 4299 4297 CONECT 4300 4297 CONECT 4301 4298 4302 CONECT 4302 4301 4303 CONECT 4303 4302 4304 4306 CONECT 4304 4303 4305 CONECT 4305 4298 4304 CONECT 4306 4303 4307 CONECT 4307 4306 4308 CONECT 4308 4307 4309 CONECT 4309 4308 4310 CONECT 4310 4309 4311 CONECT 4311 4310 4312 CONECT 4312 4311 4313 CONECT 4313 4312 4314 CONECT 4314 4313 4315 CONECT 4315 4314 CONECT 4316 4317 4321 CONECT 4317 4316 4318 4319 4320 CONECT 4318 4317 CONECT 4319 4317 CONECT 4320 4317 CONECT 4321 4316 4322 4323 4324 CONECT 4322 4321 4325 4329 CONECT 4323 4321 CONECT 4324 4321 CONECT 4325 4322 4326 CONECT 4326 4325 4327 CONECT 4327 4326 4328 4330 CONECT 4328 4327 4329 CONECT 4329 4322 4328 CONECT 4330 4327 4331 CONECT 4331 4330 4332 CONECT 4332 4331 4333 CONECT 4333 4332 4334 CONECT 4334 4333 4335 CONECT 4335 4334 4336 CONECT 4336 4335 4337 CONECT 4337 4336 4338 CONECT 4338 4337 4339 CONECT 4339 4338 CONECT 4340 1714 2087 2654 4159 CONECT 4340 4430 CONECT 4341 4342 4343 4344 4345 CONECT 4342 4341 CONECT 4343 4341 CONECT 4344 4341 CONECT 4345 4341 CONECT 4346 4347 4348 4349 4350 CONECT 4347 4346 CONECT 4348 4346 CONECT 4349 4346 CONECT 4350 4346 CONECT 4351 4352 4353 4354 4355 CONECT 4352 4351 CONECT 4353 4351 CONECT 4354 4351 CONECT 4355 4351 CONECT 4356 4357 4358 4359 4360 CONECT 4357 4356 CONECT 4358 4356 CONECT 4359 4356 CONECT 4360 4356 CONECT 4361 4362 4363 4364 4365 CONECT 4362 4361 CONECT 4363 4361 CONECT 4364 4361 CONECT 4365 4361 CONECT 4366 4367 4368 4369 4370 CONECT 4367 4366 CONECT 4368 4366 CONECT 4369 4366 CONECT 4370 4366 CONECT 4430 4340 MASTER 361 0 10 11 39 0 0 6 4605 1 109 42 END