data_9M6B # _entry.id 9M6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M6B pdb_00009m6b 10.2210/pdb9m6b/pdb WWPDB D_1300057251 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-09-16 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M6B _pdbx_database_status.recvd_initial_deposition_date 2025-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, M.' 1 ? 'Huang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of xanthine/guanine RNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Huang, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (42-MER)' 13470.997 4 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 3 ? ? ? ? 3 non-polymer syn GUANINE 151.126 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 GUANINE GUN 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 U n 1 6 G n 1 7 G n 1 8 C n 1 9 A n 1 10 C n 1 11 G n 1 12 U n 1 13 G n 1 14 U n 1 15 A n 1 16 U n 1 17 U n 1 18 A n 1 19 C n 1 20 C n 1 21 C n 1 22 U n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 A n 1 32 C n 1 33 G n 1 34 U n 1 35 G n 1 36 C n 1 37 C n 1 38 A n 1 39 U n 1 40 C n 1 41 G n 1 42 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -4 ? ? ? A . n A 1 2 C 2 -3 -3 C C A . n A 1 3 G 3 -2 -2 G G A . n A 1 4 A 4 -1 -1 A A A . n A 1 5 U 5 0 0 U U A . n A 1 6 G 6 1 1 G G A . n A 1 7 G 7 2 2 G G A . n A 1 8 C 8 3 3 C C A . n A 1 9 A 9 4 4 A A A . n A 1 10 C 10 5 5 C C A . n A 1 11 G 11 6 6 G G A . n A 1 12 U 12 7 7 U U A . n A 1 13 G 13 8 8 G G A . n A 1 14 U 14 9 9 U U A . n A 1 15 A 15 10 10 A A A . n A 1 16 U 16 11 11 U U A . n A 1 17 U 17 12 12 U U A . n A 1 18 A 18 13 13 A A A . n A 1 19 C 19 14 14 C C A . n A 1 20 C 20 15 15 C C A . n A 1 21 C 21 16 16 C C A . n A 1 22 U 22 17 17 U U A . n A 1 23 A 23 18 18 A A A . n A 1 24 G 24 19 19 G G A . n A 1 25 U 25 20 20 U U A . n A 1 26 G 26 21 21 G G A . n A 1 27 G 27 22 22 G G A . n A 1 28 U 28 23 23 U U A . n A 1 29 C 29 24 24 C C A . n A 1 30 G 30 25 25 G G A . n A 1 31 A 31 26 26 A A A . n A 1 32 C 32 27 27 C C A . n A 1 33 G 33 28 28 G G A . n A 1 34 U 34 29 29 U U A . n A 1 35 G 35 30 30 G G A . n A 1 36 C 36 31 31 C C A . n A 1 37 C 37 32 32 C C A . n A 1 38 A 38 33 33 A A A . n A 1 39 U 39 34 34 U U A . n A 1 40 C 40 35 35 C C A . n A 1 41 G 41 36 36 G G A . n A 1 42 C 42 37 37 C C A . n B 1 1 G 1 -4 ? ? ? B . n B 1 2 C 2 -3 -3 C C B . n B 1 3 G 3 -2 -2 G G B . n B 1 4 A 4 -1 -1 A A B . n B 1 5 U 5 0 0 U U B . n B 1 6 G 6 1 1 G G B . n B 1 7 G 7 2 2 G G B . n B 1 8 C 8 3 3 C C B . n B 1 9 A 9 4 4 A A B . n B 1 10 C 10 5 5 C C B . n B 1 11 G 11 6 6 G G B . n B 1 12 U 12 7 7 U U B . n B 1 13 G 13 8 8 G G B . n B 1 14 U 14 9 9 U U B . n B 1 15 A 15 10 10 A A B . n B 1 16 U 16 11 11 U U B . n B 1 17 U 17 12 12 U U B . n B 1 18 A 18 13 13 A A B . n B 1 19 C 19 14 14 C C B . n B 1 20 C 20 15 15 C C B . n B 1 21 C 21 16 16 C C B . n B 1 22 U 22 17 17 U U B . n B 1 23 A 23 18 18 A A B . n B 1 24 G 24 19 19 G G B . n B 1 25 U 25 20 20 U U B . n B 1 26 G 26 21 21 G G B . n B 1 27 G 27 22 22 G G B . n B 1 28 U 28 23 23 U U B . n B 1 29 C 29 24 24 C C B . n B 1 30 G 30 25 25 G G B . n B 1 31 A 31 26 26 A A B . n B 1 32 C 32 27 27 C C B . n B 1 33 G 33 28 28 G G B . n B 1 34 U 34 29 29 U U B . n B 1 35 G 35 30 30 G G B . n B 1 36 C 36 31 31 C C B . n B 1 37 C 37 32 32 C C B . n B 1 38 A 38 33 33 A A B . n B 1 39 U 39 34 34 U U B . n B 1 40 C 40 35 35 C C B . n B 1 41 G 41 36 36 G G B . n B 1 42 C 42 37 37 C C B . n C 1 1 G 1 -4 ? ? ? C . n C 1 2 C 2 -3 -3 C C C . n C 1 3 G 3 -2 -2 G G C . n C 1 4 A 4 -1 -1 A A C . n C 1 5 U 5 0 0 U U C . n C 1 6 G 6 1 1 G G C . n C 1 7 G 7 2 2 G G C . n C 1 8 C 8 3 3 C C C . n C 1 9 A 9 4 4 A A C . n C 1 10 C 10 5 5 C C C . n C 1 11 G 11 6 6 G G C . n C 1 12 U 12 7 7 U U C . n C 1 13 G 13 8 8 G G C . n C 1 14 U 14 9 9 U U C . n C 1 15 A 15 10 10 A A C . n C 1 16 U 16 11 11 U U C . n C 1 17 U 17 12 12 U U C . n C 1 18 A 18 13 13 A A C . n C 1 19 C 19 14 14 C C C . n C 1 20 C 20 15 15 C C C . n C 1 21 C 21 16 16 C C C . n C 1 22 U 22 17 17 U U C . n C 1 23 A 23 18 18 A A C . n C 1 24 G 24 19 19 G G C . n C 1 25 U 25 20 20 U U C . n C 1 26 G 26 21 21 G G C . n C 1 27 G 27 22 22 G G C . n C 1 28 U 28 23 23 U U C . n C 1 29 C 29 24 24 C C C . n C 1 30 G 30 25 25 G G C . n C 1 31 A 31 26 26 A A C . n C 1 32 C 32 27 27 C C C . n C 1 33 G 33 28 28 G G C . n C 1 34 U 34 29 29 U U C . n C 1 35 G 35 30 30 G G C . n C 1 36 C 36 31 31 C C C . n C 1 37 C 37 32 32 C C C . n C 1 38 A 38 33 33 A A C . n C 1 39 U 39 34 34 U U C . n C 1 40 C 40 35 35 C C C . n C 1 41 G 41 36 36 G G C . n C 1 42 C 42 37 37 C C C . n D 1 1 G 1 -4 -4 G G D . n D 1 2 C 2 -3 -3 C C D . n D 1 3 G 3 -2 -2 G G D . n D 1 4 A 4 -1 -1 A A D . n D 1 5 U 5 0 0 U U D . n D 1 6 G 6 1 1 G G D . n D 1 7 G 7 2 2 G G D . n D 1 8 C 8 3 3 C C D . n D 1 9 A 9 4 4 A A D . n D 1 10 C 10 5 5 C C D . n D 1 11 G 11 6 6 G G D . n D 1 12 U 12 7 7 U U D . n D 1 13 G 13 8 8 G G D . n D 1 14 U 14 9 9 U U D . n D 1 15 A 15 10 10 A A D . n D 1 16 U 16 11 11 U U D . n D 1 17 U 17 12 12 U U D . n D 1 18 A 18 13 13 A A D . n D 1 19 C 19 14 14 C C D . n D 1 20 C 20 15 15 C C D . n D 1 21 C 21 16 16 C C D . n D 1 22 U 22 17 17 U U D . n D 1 23 A 23 18 18 A A D . n D 1 24 G 24 19 19 G G D . n D 1 25 U 25 20 20 U U D . n D 1 26 G 26 21 21 G G D . n D 1 27 G 27 22 22 G G D . n D 1 28 U 28 23 23 U U D . n D 1 29 C 29 24 24 C C D . n D 1 30 G 30 25 25 G G D . n D 1 31 A 31 26 26 A A D . n D 1 32 C 32 27 27 C C D . n D 1 33 G 33 28 28 G G D . n D 1 34 U 34 29 29 U U D . n D 1 35 G 35 30 30 G G D . n D 1 36 C 36 31 31 C C D . n D 1 37 C 37 32 32 C C D . n D 1 38 A 38 33 33 A A D . n D 1 39 U 39 34 34 U U D . n D 1 40 C 40 35 35 C C D . n D 1 41 G 41 36 36 G G D . n D 1 42 C 42 37 37 C C D . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GUN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GUN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GTP 1 101 -4 GTP GTP A . F 3 GUN 1 102 101 GUN GUN A . G 2 GTP 1 101 -4 GTP GTP B . H 3 GUN 1 102 101 GUN GUN B . I 4 NA 1 103 1 NA NA B . J 2 GTP 1 101 -4 GTP GTP C . K 3 GUN 1 102 101 GUN GUN C . L 3 GUN 1 101 101 GUN GUN D . M 5 HOH 1 201 88 HOH HOH A . M 5 HOH 2 202 48 HOH HOH A . M 5 HOH 3 203 92 HOH HOH A . M 5 HOH 4 204 118 HOH HOH A . M 5 HOH 5 205 53 HOH HOH A . M 5 HOH 6 206 81 HOH HOH A . M 5 HOH 7 207 105 HOH HOH A . M 5 HOH 8 208 96 HOH HOH A . M 5 HOH 9 209 90 HOH HOH A . M 5 HOH 10 210 52 HOH HOH A . M 5 HOH 11 211 11 HOH HOH A . M 5 HOH 12 212 102 HOH HOH A . M 5 HOH 13 213 94 HOH HOH A . M 5 HOH 14 214 10 HOH HOH A . M 5 HOH 15 215 123 HOH HOH A . M 5 HOH 16 216 100 HOH HOH A . M 5 HOH 17 217 71 HOH HOH A . M 5 HOH 18 218 97 HOH HOH A . M 5 HOH 19 219 65 HOH HOH A . M 5 HOH 20 220 26 HOH HOH A . N 5 HOH 1 201 42 HOH HOH B . N 5 HOH 2 202 87 HOH HOH B . N 5 HOH 3 203 33 HOH HOH B . N 5 HOH 4 204 111 HOH HOH B . N 5 HOH 5 205 45 HOH HOH B . N 5 HOH 6 206 89 HOH HOH B . N 5 HOH 7 207 47 HOH HOH B . N 5 HOH 8 208 62 HOH HOH B . N 5 HOH 9 209 122 HOH HOH B . N 5 HOH 10 210 51 HOH HOH B . N 5 HOH 11 211 86 HOH HOH B . N 5 HOH 12 212 43 HOH HOH B . N 5 HOH 13 213 12 HOH HOH B . N 5 HOH 14 214 99 HOH HOH B . N 5 HOH 15 215 1 HOH HOH B . N 5 HOH 16 216 29 HOH HOH B . N 5 HOH 17 217 117 HOH HOH B . N 5 HOH 18 218 119 HOH HOH B . N 5 HOH 19 219 5 HOH HOH B . N 5 HOH 20 220 28 HOH HOH B . N 5 HOH 21 221 91 HOH HOH B . N 5 HOH 22 222 56 HOH HOH B . N 5 HOH 23 223 16 HOH HOH B . N 5 HOH 24 224 57 HOH HOH B . N 5 HOH 25 225 22 HOH HOH B . N 5 HOH 26 226 20 HOH HOH B . N 5 HOH 27 227 93 HOH HOH B . N 5 HOH 28 228 34 HOH HOH B . N 5 HOH 29 229 98 HOH HOH B . N 5 HOH 30 230 125 HOH HOH B . N 5 HOH 31 231 67 HOH HOH B . N 5 HOH 32 232 24 HOH HOH B . N 5 HOH 33 233 113 HOH HOH B . N 5 HOH 34 234 19 HOH HOH B . N 5 HOH 35 235 103 HOH HOH B . N 5 HOH 36 236 68 HOH HOH B . N 5 HOH 37 237 15 HOH HOH B . N 5 HOH 38 238 95 HOH HOH B . N 5 HOH 39 239 114 HOH HOH B . N 5 HOH 40 240 124 HOH HOH B . N 5 HOH 41 241 74 HOH HOH B . N 5 HOH 42 242 44 HOH HOH B . N 5 HOH 43 243 126 HOH HOH B . N 5 HOH 44 244 107 HOH HOH B . O 5 HOH 1 201 116 HOH HOH C . O 5 HOH 2 202 70 HOH HOH C . O 5 HOH 3 203 39 HOH HOH C . O 5 HOH 4 204 82 HOH HOH C . O 5 HOH 5 205 63 HOH HOH C . O 5 HOH 6 206 76 HOH HOH C . O 5 HOH 7 207 72 HOH HOH C . O 5 HOH 8 208 13 HOH HOH C . O 5 HOH 9 209 59 HOH HOH C . O 5 HOH 10 210 85 HOH HOH C . O 5 HOH 11 211 101 HOH HOH C . O 5 HOH 12 212 35 HOH HOH C . O 5 HOH 13 213 84 HOH HOH C . O 5 HOH 14 214 41 HOH HOH C . O 5 HOH 15 215 25 HOH HOH C . O 5 HOH 16 216 21 HOH HOH C . O 5 HOH 17 217 110 HOH HOH C . O 5 HOH 18 218 37 HOH HOH C . O 5 HOH 19 219 3 HOH HOH C . O 5 HOH 20 220 69 HOH HOH C . O 5 HOH 21 221 23 HOH HOH C . O 5 HOH 22 222 32 HOH HOH C . O 5 HOH 23 223 18 HOH HOH C . O 5 HOH 24 224 61 HOH HOH C . O 5 HOH 25 225 6 HOH HOH C . O 5 HOH 26 226 66 HOH HOH C . O 5 HOH 27 227 49 HOH HOH C . O 5 HOH 28 228 73 HOH HOH C . O 5 HOH 29 229 46 HOH HOH C . O 5 HOH 30 230 30 HOH HOH C . O 5 HOH 31 231 54 HOH HOH C . O 5 HOH 32 232 120 HOH HOH C . O 5 HOH 33 233 121 HOH HOH C . O 5 HOH 34 234 80 HOH HOH C . P 5 HOH 1 201 79 HOH HOH D . P 5 HOH 2 202 17 HOH HOH D . P 5 HOH 3 203 78 HOH HOH D . P 5 HOH 4 204 108 HOH HOH D . P 5 HOH 5 205 112 HOH HOH D . P 5 HOH 6 206 64 HOH HOH D . P 5 HOH 7 207 58 HOH HOH D . P 5 HOH 8 208 40 HOH HOH D . P 5 HOH 9 209 36 HOH HOH D . P 5 HOH 10 210 8 HOH HOH D . P 5 HOH 11 211 75 HOH HOH D . P 5 HOH 12 212 106 HOH HOH D . P 5 HOH 13 213 104 HOH HOH D . P 5 HOH 14 214 50 HOH HOH D . P 5 HOH 15 215 38 HOH HOH D . P 5 HOH 16 216 4 HOH HOH D . P 5 HOH 17 217 31 HOH HOH D . P 5 HOH 18 218 55 HOH HOH D . P 5 HOH 19 219 109 HOH HOH D . P 5 HOH 20 220 9 HOH HOH D . P 5 HOH 21 221 77 HOH HOH D . P 5 HOH 22 222 7 HOH HOH D . P 5 HOH 23 223 14 HOH HOH D . P 5 HOH 24 224 2 HOH HOH D . P 5 HOH 25 225 27 HOH HOH D . P 5 HOH 26 226 83 HOH HOH D . P 5 HOH 27 227 115 HOH HOH D . P 5 HOH 28 228 60 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A GTP 101 ? PG ? E GTP 1 PG 2 1 N 1 A GTP 101 ? O1G ? E GTP 1 O1G 3 1 N 1 A GTP 101 ? O2G ? E GTP 1 O2G 4 1 N 1 A GTP 101 ? O3G ? E GTP 1 O3G # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 95.270 _cell.angle_alpha_esd ? _cell.angle_beta 95.470 _cell.angle_beta_esd ? _cell.angle_gamma 90.550 _cell.angle_gamma_esd ? _cell.entry_id 9M6B _cell.details ? _cell.formula_units_Z ? _cell.length_a 22.885 _cell.length_a_esd ? _cell.length_b 46.687 _cell.length_b_esd ? _cell.length_c 99.999 _cell.length_c_esd ? _cell.volume 105887.868 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9M6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M6B _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Potassium chloride 0.02 M Magnesium chloride hexahydrate 50% v/v (+/-)-2-Methyl-2,4-pentanediol 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 28.12 _reflns.entry_id 9M6B _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.61 _reflns.d_resolution_low 33.08 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12213 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.166 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.951 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.166 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.62 _reflns_shell.d_res_low 2.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 858 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.907 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.288 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.907 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.07 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9M6B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.61 _refine.ls_d_res_low 24.78 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12086 _refine.ls_number_reflns_R_free 596 _refine.ls_number_reflns_R_work 11490 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.40 _refine.ls_percent_reflns_R_free 4.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2388 _refine.ls_R_factor_R_free 0.3041 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2358 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.9141 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3626 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.61 _refine_hist.d_res_low 24.78 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 3766 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3503 _refine_hist.pdbx_number_atoms_ligand 137 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0027 ? 4052 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6547 ? 6300 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0331 ? 837 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0043 ? 172 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.9172 ? 2008 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.61 2.88 . . 170 2819 95.62 . . . . 0.3120 . . . . . . . . . . . . . . . 0.3970 'X-RAY DIFFRACTION' 2.88 3.29 . . 142 2886 97.71 . . . . 0.2544 . . . . . . . . . . . . . . . 0.3351 'X-RAY DIFFRACTION' 3.29 4.14 . . 151 2838 97.84 . . . . 0.2252 . . . . . . . . . . . . . . . 0.2930 'X-RAY DIFFRACTION' 4.14 24.78 . . 133 2947 98.47 . . . . 0.2038 . . . . . . . . . . . . . . . 0.2414 # _struct.entry_id 9M6B _struct.title 'Crystal structure of xanthine/guanine RNA (P1-12bp) aptamer with guanine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M6B _struct_keywords.text 'xanthine/guanine RNA aptamer, guanine, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9M6B _struct_ref.pdbx_db_accession 9M6B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M6B A 1 ? 42 ? 9M6B -4 ? 37 ? -4 37 2 1 9M6B B 1 ? 42 ? 9M6B -4 ? 37 ? -4 37 3 1 9M6B C 1 ? 42 ? 9M6B -4 ? 37 ? -4 37 4 1 9M6B D 1 ? 42 ? 9M6B -4 ? 37 ? -4 37 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,J,K,M,O 2 1 B,G,H,I,N 2 2 D,L,P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 -0.4481561446 0.0000000000 1.0000000000 0.0000000000 46.6848489884 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 P ? ? ? 1_555 E GTP . "O3'" ? ? A C -3 A GTP 101 1_555 ? ? ? ? ? ? ? 1.545 ? ? covale2 covale both ? B C 2 P ? ? ? 1_555 G GTP . "O3'" ? ? B C -3 B GTP 101 1_555 ? ? ? ? ? ? ? 1.548 ? ? covale3 covale both ? C C 2 P ? ? ? 1_555 J GTP . "O3'" ? ? C C -3 C GTP 101 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? B U 39 "O3'" ? ? ? 1_555 I NA . NA ? ? B U 34 B NA 103 1_555 ? ? ? ? ? ? ? 3.022 ? ? metalc2 metalc ? ? B C 40 OP1 ? ? ? 1_555 I NA . NA ? ? B C 35 B NA 103 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc3 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? B NA 103 B HOH 227 1_555 ? ? ? ? ? ? ? 3.157 ? ? metalc4 metalc ? ? I NA . NA ? ? ? 1_645 C U 5 O2 ? ? B NA 103 C U 0 1_555 ? ? ? ? ? ? ? 2.993 ? ? metalc5 metalc ? ? I NA . NA ? ? ? 1_645 C U 39 O2 ? ? B NA 103 C U 34 1_555 ? ? ? ? ? ? ? 2.802 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 41 N1 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 41 O6 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 41 N2 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 40 N3 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 40 O2 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 40 N4 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 39 N3 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 39 O4 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 30 O6 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 30 N1 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 18 N7 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 41 N1 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 41 O6 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 41 N2 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 40 N3 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 40 O2 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 40 N4 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 39 N3 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 39 O4 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 38 N1 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 38 N6 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 34 N3 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 34 O4 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 31 N1 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 31 N6 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 30 O6 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog75 hydrog ? ? B G 13 O6 ? ? ? 1_555 B G 30 N1 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog76 hydrog ? ? B U 16 N3 ? ? ? 1_555 B A 18 N7 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog77 hydrog ? ? B U 16 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 41 N1 ? ? C C -3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 41 O6 ? ? C C -3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 41 N2 ? ? C C -3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 40 N3 ? ? C G -2 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 40 O2 ? ? C G -2 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 40 N4 ? ? C G -2 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C A 4 N1 ? ? ? 1_555 C U 39 N3 ? ? C A -1 C U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C A 4 N6 ? ? ? 1_555 C U 39 O4 ? ? C A -1 C U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C U 5 N3 ? ? ? 1_555 C A 38 N1 ? ? C U 0 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C U 5 O4 ? ? ? 1_555 C A 38 N6 ? ? C U 0 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C G 6 N1 ? ? ? 1_555 C C 37 N3 ? ? C G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C G 6 N2 ? ? ? 1_555 C C 37 O2 ? ? C G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? C G 6 O6 ? ? ? 1_555 C C 37 N4 ? ? C G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? C G 7 N1 ? ? ? 1_555 C C 36 N3 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? C G 7 N2 ? ? ? 1_555 C C 36 O2 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? C G 7 O6 ? ? ? 1_555 C C 36 N4 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? C C 8 N3 ? ? ? 1_555 C G 35 N1 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? C C 8 N4 ? ? ? 1_555 C G 35 O6 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? C C 8 O2 ? ? ? 1_555 C G 35 N2 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? C A 9 N1 ? ? ? 1_555 C U 34 N3 ? ? C A 4 C U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? C A 9 N6 ? ? ? 1_555 C U 34 O4 ? ? C A 4 C U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? C C 10 N3 ? ? ? 1_555 C G 33 N1 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? C C 10 N4 ? ? ? 1_555 C G 33 O6 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? C C 10 O2 ? ? ? 1_555 C G 33 N2 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? C G 11 N1 ? ? ? 1_555 C C 32 N3 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 32 O2 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? C G 11 O6 ? ? ? 1_555 C C 32 N4 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? C U 12 N3 ? ? ? 1_555 C A 31 N1 ? ? C U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? C U 12 O4 ? ? ? 1_555 C A 31 N6 ? ? C U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? C G 13 N1 ? ? ? 1_555 C G 30 O6 ? ? C G 8 C G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog119 hydrog ? ? C G 13 O6 ? ? ? 1_555 C G 30 N1 ? ? C G 8 C G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog120 hydrog ? ? C U 16 N3 ? ? ? 1_555 C A 18 N7 ? ? C U 11 C A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog121 hydrog ? ? C U 16 O4 ? ? ? 1_555 C A 18 N6 ? ? C U 11 C A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog122 hydrog ? ? C A 18 N1 ? ? ? 1_555 C U 28 N3 ? ? C A 13 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? C A 18 N6 ? ? ? 1_555 C U 28 O4 ? ? C A 13 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? C C 19 N3 ? ? ? 1_555 C G 27 N1 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? C C 19 N4 ? ? ? 1_555 C G 27 O6 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? C C 19 O2 ? ? ? 1_555 C G 27 N2 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? C C 20 N3 ? ? ? 1_555 C G 26 N1 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? C C 20 N4 ? ? ? 1_555 C G 26 O6 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? C C 20 O2 ? ? ? 1_555 C G 26 N2 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? C C 21 N3 ? ? ? 1_555 C G 24 N1 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? C C 21 N4 ? ? ? 1_555 C G 24 O6 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? C C 21 O2 ? ? ? 1_555 C G 24 N2 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 42 N3 ? ? D G -4 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 42 O2 ? ? D G -4 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 42 N4 ? ? D G -4 D C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? D C 2 N3 ? ? ? 1_555 D G 41 N1 ? ? D C -3 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? D C 2 N4 ? ? ? 1_555 D G 41 O6 ? ? D C -3 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? D C 2 O2 ? ? ? 1_555 D G 41 N2 ? ? D C -3 D G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? D G 3 N1 ? ? ? 1_555 D C 40 N3 ? ? D G -2 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? D G 3 N2 ? ? ? 1_555 D C 40 O2 ? ? D G -2 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? D G 3 O6 ? ? ? 1_555 D C 40 N4 ? ? D G -2 D C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? D A 4 N1 ? ? ? 1_555 D U 39 N3 ? ? D A -1 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? D A 4 N6 ? ? ? 1_555 D U 39 O4 ? ? D A -1 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? D U 5 N3 ? ? ? 1_555 D A 38 N1 ? ? D U 0 D A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? D U 5 O4 ? ? ? 1_555 D A 38 N6 ? ? D U 0 D A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? D G 6 N1 ? ? ? 1_555 D C 37 N3 ? ? D G 1 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? D G 6 N2 ? ? ? 1_555 D C 37 O2 ? ? D G 1 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? D G 6 O6 ? ? ? 1_555 D C 37 N4 ? ? D G 1 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? D G 7 N1 ? ? ? 1_555 D C 36 N3 ? ? D G 2 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? D G 7 N2 ? ? ? 1_555 D C 36 O2 ? ? D G 2 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? D G 7 O6 ? ? ? 1_555 D C 36 N4 ? ? D G 2 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? D C 8 N3 ? ? ? 1_555 D G 35 N1 ? ? D C 3 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? D C 8 N4 ? ? ? 1_555 D G 35 O6 ? ? D C 3 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? D C 8 O2 ? ? ? 1_555 D G 35 N2 ? ? D C 3 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? D A 9 N1 ? ? ? 1_555 D U 34 N3 ? ? D A 4 D U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? D A 9 N6 ? ? ? 1_555 D U 34 O4 ? ? D A 4 D U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? D C 10 N3 ? ? ? 1_555 D G 33 N1 ? ? D C 5 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? D C 10 N4 ? ? ? 1_555 D G 33 O6 ? ? D C 5 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? D C 10 O2 ? ? ? 1_555 D G 33 N2 ? ? D C 5 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? D G 11 N1 ? ? ? 1_555 D C 32 N3 ? ? D G 6 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? D G 11 N2 ? ? ? 1_555 D C 32 O2 ? ? D G 6 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? D G 11 O6 ? ? ? 1_555 D C 32 N4 ? ? D G 6 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? D U 12 N3 ? ? ? 1_555 D A 31 N1 ? ? D U 7 D A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? D U 12 O4 ? ? ? 1_555 D A 31 N6 ? ? D U 7 D A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? D G 13 N1 ? ? ? 1_555 D G 30 O6 ? ? D G 8 D G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog166 hydrog ? ? D G 13 O6 ? ? ? 1_555 D G 30 N1 ? ? D G 8 D G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog167 hydrog ? ? D U 16 N3 ? ? ? 1_555 D A 18 N7 ? ? D U 11 D A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog168 hydrog ? ? D U 16 O4 ? ? ? 1_555 D A 18 N6 ? ? D U 11 D A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog169 hydrog ? ? D A 18 N1 ? ? ? 1_555 D U 28 N3 ? ? D A 13 D U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? D A 18 N6 ? ? ? 1_555 D U 28 O4 ? ? D A 13 D U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? D C 19 N3 ? ? ? 1_555 D G 27 N1 ? ? D C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? D C 19 N4 ? ? ? 1_555 D G 27 O6 ? ? D C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? D C 19 O2 ? ? ? 1_555 D G 27 N2 ? ? D C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? D C 20 N3 ? ? ? 1_555 D G 26 N1 ? ? D C 15 D G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? D C 20 N4 ? ? ? 1_555 D G 26 O6 ? ? D C 15 D G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? D C 20 O2 ? ? ? 1_555 D G 26 N2 ? ? D C 15 D G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? D C 21 N3 ? ? ? 1_555 D G 24 N1 ? ? D C 16 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog178 hydrog ? ? D C 21 N4 ? ? ? 1_555 D G 24 O6 ? ? D C 16 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog179 hydrog ? ? D C 21 O2 ? ? ? 1_555 D G 24 N2 ? ? D C 16 D G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? B U 39 ? B U 34 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 OP1 ? B C 40 ? B C 35 ? 1_555 52.2 ? 2 "O3'" ? B U 39 ? B U 34 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O ? N HOH . ? B HOH 227 ? 1_555 53.7 ? 3 OP1 ? B C 40 ? B C 35 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O ? N HOH . ? B HOH 227 ? 1_555 83.3 ? 4 "O3'" ? B U 39 ? B U 34 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 5 ? C U 0 ? 1_555 33.8 ? 5 OP1 ? B C 40 ? B C 35 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 5 ? C U 0 ? 1_555 60.8 ? 6 O ? N HOH . ? B HOH 227 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 5 ? C U 0 ? 1_555 84.9 ? 7 "O3'" ? B U 39 ? B U 34 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 39 ? C U 34 ? 1_555 34.6 ? 8 OP1 ? B C 40 ? B C 35 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 39 ? C U 34 ? 1_555 57.0 ? 9 O ? N HOH . ? B HOH 227 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 39 ? C U 34 ? 1_555 87.1 ? 10 O2 ? C U 5 ? C U 0 ? 1_555 NA ? I NA . ? B NA 103 ? 1_555 O2 ? C U 39 ? C U 34 ? 1_555 4.5 ? # _pdbx_entry_details.entry_id 9M6B _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 C G 28 ? ? O C HOH 202 ? ? 1.19 2 1 OP2 B U 7 ? ? "HO2'" B G 8 ? ? 1.48 3 1 "HO2'" C U 11 ? ? O C HOH 205 ? ? 1.53 4 1 O2 D U 7 ? ? O D HOH 201 ? ? 1.84 5 1 "O2'" B C -3 ? ? O B HOH 201 ? ? 1.92 6 1 O6 B G 2 ? ? O B HOH 202 ? ? 1.92 7 1 OP1 C G 19 ? ? O C HOH 201 ? ? 1.93 8 1 N2 C G 28 ? ? O C HOH 202 ? ? 1.94 9 1 OP2 B A -1 ? ? O B HOH 203 ? ? 1.95 10 1 OP2 D G 36 ? ? O D HOH 202 ? ? 1.97 11 1 O1G C GTP 101 ? ? O C HOH 203 ? ? 1.97 12 1 O D HOH 214 ? ? O D HOH 228 ? ? 2.08 13 1 O6 D G 36 ? ? O D HOH 203 ? ? 2.08 14 1 OP2 A A 13 ? ? O A HOH 201 ? ? 2.09 15 1 OP2 A C 24 ? ? O A HOH 202 ? ? 2.09 16 1 N3 B G -2 ? ? O B HOH 204 ? ? 2.11 17 1 OP2 B C 16 ? ? O B HOH 205 ? ? 2.12 18 1 O4 B U 29 ? ? O B HOH 206 ? ? 2.13 19 1 "O2'" B GTP 101 ? ? O B HOH 207 ? ? 2.14 20 1 O C HOH 209 ? ? O C HOH 214 ? ? 2.14 21 1 N7 A A 4 ? ? O A HOH 203 ? ? 2.14 22 1 "O2'" D C -3 ? ? O D HOH 204 ? ? 2.16 23 1 OP1 B C -3 ? ? "O3'" B GTP 101 ? ? 2.16 24 1 O4 B U 9 ? ? O B HOH 208 ? ? 2.16 25 1 O2 C C 27 ? ? O C HOH 204 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 216 ? ? 1_555 O B HOH 243 ? ? 1_655 1.93 2 1 O B HOH 221 ? ? 1_555 O B HOH 222 ? ? 1_455 2.15 3 1 "O2'" A U 34 ? ? 1_555 OP1 D C 35 ? ? 1_665 2.16 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -4 ? A G 1 2 1 Y 1 B G -4 ? B G 1 3 1 Y 1 C G -4 ? C G 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 GUN N9 N Y N 159 GUN C8 C Y N 160 GUN N7 N Y N 161 GUN C5 C Y N 162 GUN C6 C N N 163 GUN O6 O N N 164 GUN N1 N N N 165 GUN C2 C N N 166 GUN N2 N N N 167 GUN N3 N N N 168 GUN C4 C Y N 169 GUN HN9 H N N 170 GUN H8 H N N 171 GUN HN1 H N N 172 GUN HN21 H N N 173 GUN HN22 H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 NA NA NA N N 178 U OP3 O N N 179 U P P N N 180 U OP1 O N N 181 U OP2 O N N 182 U "O5'" O N N 183 U "C5'" C N N 184 U "C4'" C N R 185 U "O4'" O N N 186 U "C3'" C N S 187 U "O3'" O N N 188 U "C2'" C N R 189 U "O2'" O N N 190 U "C1'" C N R 191 U N1 N N N 192 U C2 C N N 193 U O2 O N N 194 U N3 N N N 195 U C4 C N N 196 U O4 O N N 197 U C5 C N N 198 U C6 C N N 199 U HOP3 H N N 200 U HOP2 H N N 201 U "H5'" H N N 202 U "H5''" H N N 203 U "H4'" H N N 204 U "H3'" H N N 205 U "HO3'" H N N 206 U "H2'" H N N 207 U "HO2'" H N N 208 U "H1'" H N N 209 U H3 H N N 210 U H5 H N N 211 U H6 H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 GUN N9 C8 sing Y N 166 GUN N9 C4 sing Y N 167 GUN N9 HN9 sing N N 168 GUN C8 N7 doub Y N 169 GUN C8 H8 sing N N 170 GUN N7 C5 sing Y N 171 GUN C5 C6 sing N N 172 GUN C5 C4 doub Y N 173 GUN C6 O6 doub N N 174 GUN C6 N1 sing N N 175 GUN N1 C2 sing N N 176 GUN N1 HN1 sing N N 177 GUN C2 N2 sing N N 178 GUN C2 N3 doub N N 179 GUN N2 HN21 sing N N 180 GUN N2 HN22 sing N N 181 GUN N3 C4 sing N N 182 HOH O H1 sing N N 183 HOH O H2 sing N N 184 U OP3 P sing N N 185 U OP3 HOP3 sing N N 186 U P OP1 doub N N 187 U P OP2 sing N N 188 U P "O5'" sing N N 189 U OP2 HOP2 sing N N 190 U "O5'" "C5'" sing N N 191 U "C5'" "C4'" sing N N 192 U "C5'" "H5'" sing N N 193 U "C5'" "H5''" sing N N 194 U "C4'" "O4'" sing N N 195 U "C4'" "C3'" sing N N 196 U "C4'" "H4'" sing N N 197 U "O4'" "C1'" sing N N 198 U "C3'" "O3'" sing N N 199 U "C3'" "C2'" sing N N 200 U "C3'" "H3'" sing N N 201 U "O3'" "HO3'" sing N N 202 U "C2'" "O2'" sing N N 203 U "C2'" "C1'" sing N N 204 U "C2'" "H2'" sing N N 205 U "O2'" "HO2'" sing N N 206 U "C1'" N1 sing N N 207 U "C1'" "H1'" sing N N 208 U N1 C2 sing N N 209 U N1 C6 sing N N 210 U C2 O2 doub N N 211 U C2 N3 sing N N 212 U N3 C4 sing N N 213 U N3 H3 sing N N 214 U C4 O4 doub N N 215 U C4 C5 sing N N 216 U C5 C6 doub N N 217 U C5 H5 sing N N 218 U C6 H6 sing N N 219 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9M6B 'double helix' 9M6B 'a-form double helix' 9M6B 'hairpin loop' 9M6B 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 41 1_555 0.184 -0.087 -0.038 1.278 -2.752 -0.290 1 A_C-3:G36_A A -3 ? A 36 ? 19 1 1 A G 3 1_555 A C 40 1_555 -0.159 -0.176 0.019 -1.153 -4.665 -2.023 2 A_G-2:C35_A A -2 ? A 35 ? 19 1 1 A A 4 1_555 A U 39 1_555 0.048 -0.112 0.232 2.243 -6.135 0.636 3 A_A-1:U34_A A -1 ? A 34 ? 20 1 1 A U 5 1_555 A A 38 1_555 -0.020 -0.158 -0.151 3.814 -11.016 1.527 4 A_U0:A33_A A 0 ? A 33 ? 20 1 1 A G 6 1_555 A C 37 1_555 -0.227 -0.169 -0.220 -7.707 -8.734 1.689 5 A_G1:C32_A A 1 ? A 32 ? 19 1 1 A G 7 1_555 A C 36 1_555 -0.171 -0.121 -0.125 -1.478 -3.805 1.498 6 A_G2:C31_A A 2 ? A 31 ? 19 1 1 A C 8 1_555 A G 35 1_555 0.202 -0.174 0.011 3.156 -7.192 0.148 7 A_C3:G30_A A 3 ? A 30 ? 19 1 1 A A 9 1_555 A U 34 1_555 -0.063 -0.208 0.382 -0.527 -6.083 2.442 8 A_A4:U29_A A 4 ? A 29 ? 20 1 1 A C 10 1_555 A G 33 1_555 0.215 -0.186 0.161 2.420 -6.956 0.071 9 A_C5:G28_A A 5 ? A 28 ? 19 1 1 A G 11 1_555 A C 32 1_555 -0.237 -0.216 -0.077 -13.298 -13.554 -0.380 10 A_G6:C27_A A 6 ? A 27 ? 19 1 1 A U 12 1_555 A A 31 1_555 -0.019 -0.077 0.001 -0.609 -10.381 -0.703 11 A_U7:A26_A A 7 ? A 26 ? 20 1 1 A G 13 1_555 A G 30 1_555 1.509 0.599 -0.268 -20.937 1.678 -169.403 12 A_G8:G25_A A 8 ? A 25 ? 3 2 1 A A 18 1_555 A U 28 1_555 0.111 -0.072 0.230 1.693 -0.089 -2.634 13 A_A13:U23_A A 13 ? A 23 ? 20 1 1 A C 19 1_555 A G 27 1_555 0.233 -0.159 0.144 2.116 -2.154 1.428 14 A_C14:G22_A A 14 ? A 22 ? 19 1 1 A C 20 1_555 A G 26 1_555 0.148 -0.139 0.080 1.796 -1.893 1.740 15 A_C15:G21_A A 15 ? A 21 ? 19 1 1 A C 21 1_555 A G 24 1_555 0.175 -0.157 -0.109 6.562 3.795 2.889 16 A_C16:G19_A A 16 ? A 19 ? 19 1 1 B C 2 1_555 B G 41 1_555 0.237 -0.163 -0.313 -1.584 -3.830 2.094 17 B_C-3:G36_B B -3 ? B 36 ? 19 1 1 B G 3 1_555 B C 40 1_555 -0.163 -0.063 -0.279 -12.421 -7.324 -0.623 18 B_G-2:C35_B B -2 ? B 35 ? 19 1 1 B A 4 1_555 B U 39 1_555 0.002 -0.131 0.011 -4.505 4.476 1.874 19 B_A-1:U34_B B -1 ? B 34 ? 20 1 1 B U 5 1_555 B A 38 1_555 -0.066 -0.118 0.063 7.353 2.436 3.838 20 B_U0:A33_B B 0 ? B 33 ? 20 1 1 B G 6 1_555 B C 37 1_555 -0.164 -0.174 -0.452 -8.773 -4.344 1.012 21 B_G1:C32_B B 1 ? B 32 ? 19 1 1 B G 7 1_555 B C 36 1_555 -0.249 -0.224 -0.072 -8.056 -1.864 0.504 22 B_G2:C31_B B 2 ? B 31 ? 19 1 1 B C 8 1_555 B G 35 1_555 0.188 -0.223 0.243 0.861 -1.578 0.782 23 B_C3:G30_B B 3 ? B 30 ? 19 1 1 B A 9 1_555 B U 34 1_555 0.009 -0.209 0.356 4.178 -4.222 -1.206 24 B_A4:U29_B B 4 ? B 29 ? 20 1 1 B C 10 1_555 B G 33 1_555 0.274 -0.152 0.240 1.857 -11.697 4.588 25 B_C5:G28_B B 5 ? B 28 ? 19 1 1 B G 11 1_555 B C 32 1_555 -0.247 -0.179 -0.521 -10.475 -12.494 2.531 26 B_G6:C27_B B 6 ? B 27 ? 19 1 1 B U 12 1_555 B A 31 1_555 -0.012 -0.076 -0.458 0.393 -8.929 -3.076 27 B_U7:A26_B B 7 ? B 26 ? 20 1 1 B G 13 1_555 B G 30 1_555 1.142 1.455 -0.276 -25.694 1.281 -173.470 28 B_G8:G25_B B 8 ? B 25 ? 3 2 1 B A 18 1_555 B U 28 1_555 0.021 -0.143 -0.505 -4.327 -0.682 1.429 29 B_A13:U23_B B 13 ? B 23 ? 20 1 1 B C 19 1_555 B G 27 1_555 0.183 -0.180 -0.667 0.181 -2.212 1.523 30 B_C14:G22_B B 14 ? B 22 ? 19 1 1 B C 20 1_555 B G 26 1_555 0.184 -0.133 -0.349 -1.851 2.208 -0.995 31 B_C15:G21_B B 15 ? B 21 ? 19 1 1 B C 21 1_555 B G 24 1_555 0.212 -0.147 -0.203 2.695 -0.716 3.348 32 B_C16:G19_B B 16 ? B 19 ? 19 1 1 C C 2 1_555 C G 41 1_555 0.134 -0.156 0.449 -3.113 -5.918 -0.593 33 C_C-3:G36_C C -3 ? C 36 ? 19 1 1 C G 3 1_555 C C 40 1_555 -0.167 -0.194 0.341 2.875 -4.332 -2.496 34 C_G-2:C35_C C -2 ? C 35 ? 19 1 1 C A 4 1_555 C U 39 1_555 -0.005 -0.188 0.375 1.941 -7.313 -1.609 35 C_A-1:U34_C C -1 ? C 34 ? 20 1 1 C U 5 1_555 C A 38 1_555 -0.053 -0.103 0.218 -1.141 -8.863 2.164 36 C_U0:A33_C C 0 ? C 33 ? 20 1 1 C G 6 1_555 C C 37 1_555 -0.169 -0.118 -0.350 -6.543 -3.731 1.147 37 C_G1:C32_C C 1 ? C 32 ? 19 1 1 C G 7 1_555 C C 36 1_555 -0.219 -0.147 -0.020 -1.720 -2.002 2.863 38 C_G2:C31_C C 2 ? C 31 ? 19 1 1 C C 8 1_555 C G 35 1_555 0.160 -0.097 -0.037 5.042 -5.261 0.631 39 C_C3:G30_C C 3 ? C 30 ? 19 1 1 C A 9 1_555 C U 34 1_555 0.041 -0.143 0.195 2.210 -2.885 0.828 40 C_A4:U29_C C 4 ? C 29 ? 20 1 1 C C 10 1_555 C G 33 1_555 0.247 -0.176 0.049 1.957 -5.543 1.268 41 C_C5:G28_C C 5 ? C 28 ? 19 1 1 C G 11 1_555 C C 32 1_555 -0.239 -0.167 -0.091 -10.077 -10.610 1.472 42 C_G6:C27_C C 6 ? C 27 ? 19 1 1 C U 12 1_555 C A 31 1_555 -0.012 -0.073 -0.312 -0.596 -10.312 0.479 43 C_U7:A26_C C 7 ? C 26 ? 20 1 1 C G 13 1_555 C G 30 1_555 1.273 1.200 -0.405 -21.088 4.257 -172.758 44 C_G8:G25_C C 8 ? C 25 ? 3 2 1 C A 18 1_555 C U 28 1_555 0.052 -0.086 0.181 1.800 -1.802 -2.133 45 C_A13:U23_C C 13 ? C 23 ? 20 1 1 C C 19 1_555 C G 27 1_555 0.199 -0.127 0.103 1.065 -3.808 1.695 46 C_C14:G22_C C 14 ? C 22 ? 19 1 1 C C 20 1_555 C G 26 1_555 0.099 -0.110 -0.228 1.727 0.018 0.212 47 C_C15:G21_C C 15 ? C 21 ? 19 1 1 C C 21 1_555 C G 24 1_555 0.178 -0.176 -0.199 9.209 6.456 -0.230 48 C_C16:G19_C C 16 ? C 19 ? 19 1 1 D G 1 1_555 D C 42 1_555 -0.273 -0.148 -0.440 -6.119 -10.167 2.020 49 D_G-4:C37_D D -4 ? D 37 ? 19 1 1 D C 2 1_555 D G 41 1_555 0.190 -0.114 -0.205 -0.906 -8.090 0.990 50 D_C-3:G36_D D -3 ? D 36 ? 19 1 1 D G 3 1_555 D C 40 1_555 -0.205 -0.102 0.057 -8.482 -6.807 0.602 51 D_G-2:C35_D D -2 ? D 35 ? 19 1 1 D A 4 1_555 D U 39 1_555 -0.067 -0.138 -0.066 -7.002 0.198 1.601 52 D_A-1:U34_D D -1 ? D 34 ? 20 1 1 D U 5 1_555 D A 38 1_555 -0.089 -0.185 0.407 4.870 -0.735 -0.738 53 D_U0:A33_D D 0 ? D 33 ? 20 1 1 D G 6 1_555 D C 37 1_555 -0.146 -0.156 0.161 -1.056 -7.600 0.231 54 D_G1:C32_D D 1 ? D 32 ? 19 1 1 D G 7 1_555 D C 36 1_555 -0.193 -0.121 -0.020 -1.821 -1.990 0.464 55 D_G2:C31_D D 2 ? D 31 ? 19 1 1 D C 8 1_555 D G 35 1_555 0.147 -0.117 0.090 4.567 -2.015 -0.711 56 D_C3:G30_D D 3 ? D 30 ? 19 1 1 D A 9 1_555 D U 34 1_555 0.117 -0.141 0.620 4.131 -3.989 0.562 57 D_A4:U29_D D 4 ? D 29 ? 20 1 1 D C 10 1_555 D G 33 1_555 0.188 -0.124 0.303 1.313 -10.479 1.169 58 D_C5:G28_D D 5 ? D 28 ? 19 1 1 D G 11 1_555 D C 32 1_555 -0.179 -0.121 -0.101 -7.873 -14.074 1.684 59 D_G6:C27_D D 6 ? D 27 ? 19 1 1 D U 12 1_555 D A 31 1_555 0.039 -0.094 -0.315 -1.156 -12.312 -2.276 60 D_U7:A26_D D 7 ? D 26 ? 20 1 1 D G 13 1_555 D G 30 1_555 1.200 0.866 -0.496 -28.659 -0.888 -177.403 61 D_G8:G25_D D 8 ? D 25 ? 3 2 1 D A 18 1_555 D U 28 1_555 -0.008 -0.125 0.074 -2.871 -10.017 4.466 62 D_A13:U23_D D 13 ? D 23 ? 20 1 1 D C 19 1_555 D G 27 1_555 0.152 -0.108 -0.034 -0.217 -5.944 1.368 63 D_C14:G22_D D 14 ? D 22 ? 19 1 1 D C 20 1_555 D G 26 1_555 0.182 -0.128 -0.031 -1.442 -1.133 0.122 64 D_C15:G21_D D 15 ? D 21 ? 19 1 1 D C 21 1_555 D G 24 1_555 0.172 -0.107 0.075 2.868 -0.622 3.287 65 D_C16:G19_D D 16 ? D 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 41 1_555 A G 3 1_555 A C 40 1_555 -0.460 -1.757 3.038 -4.077 14.911 29.660 -5.085 0.248 1.996 26.946 7.367 33.366 1 AA_C-3G-2:C35G36_AA A -3 ? A 36 ? A -2 ? A 35 ? 1 A G 3 1_555 A C 40 1_555 A A 4 1_555 A U 39 1_555 0.183 -1.583 2.982 -1.068 4.711 35.475 -3.172 -0.434 2.749 7.687 1.743 35.792 2 AA_G-2A-1:U34C35_AA A -2 ? A 35 ? A -1 ? A 34 ? 1 A A 4 1_555 A U 39 1_555 A U 5 1_555 A A 38 1_555 -0.105 -1.210 3.226 1.911 3.812 30.590 -2.985 0.555 3.044 7.181 -3.600 30.878 3 AA_A-1U0:A33U34_AA A -1 ? A 34 ? A 0 ? A 33 ? 1 A U 5 1_555 A A 38 1_555 A G 6 1_555 A C 37 1_555 -0.198 -1.434 3.303 -2.053 17.421 31.655 -4.556 0.056 2.246 29.294 3.453 36.082 4 AA_U0G1:C32A33_AA A 0 ? A 33 ? A 1 ? A 32 ? 1 A G 6 1_555 A C 37 1_555 A G 7 1_555 A C 36 1_555 -0.625 -1.339 3.179 -4.146 7.035 30.569 -3.683 0.426 2.866 13.053 7.693 31.616 5 AA_G1G2:C31C32_AA A 1 ? A 32 ? A 2 ? A 31 ? 1 A G 7 1_555 A C 36 1_555 A C 8 1_555 A G 35 1_555 0.438 -1.068 3.253 -1.440 5.631 34.011 -2.646 -0.955 3.022 9.539 2.440 34.490 6 AA_G2C3:G30C31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A C 8 1_555 A G 35 1_555 A A 9 1_555 A U 34 1_555 -0.131 -1.599 3.243 -2.745 8.166 33.362 -3.894 -0.179 2.788 13.937 4.685 34.426 7 AA_C3A4:U29G30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A A 9 1_555 A U 34 1_555 A C 10 1_555 A G 33 1_555 -0.046 -1.466 3.181 1.961 4.289 32.036 -3.343 0.410 2.957 7.720 -3.530 32.372 8 AA_A4C5:G28U29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A C 10 1_555 A G 33 1_555 A G 11 1_555 A C 32 1_555 0.539 -2.112 3.261 5.829 20.340 30.639 -5.582 -0.199 1.661 33.894 -9.714 37.091 9 AA_C5G6:C27G28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A G 11 1_555 A C 32 1_555 A U 12 1_555 A A 31 1_555 -0.010 -1.036 3.083 1.456 1.304 32.102 -2.089 0.261 3.036 2.356 -2.629 32.160 10 AA_G6U7:A26C27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A U 12 1_555 A A 31 1_555 A G 13 1_555 A G 30 1_555 2.441 -1.742 -1.312 -91.811 -150.365 44.820 -1.332 -0.939 -0.302 -76.191 46.521 176.467 11 AA_U7G8:G25A26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A G 13 1_555 A G 30 1_555 A A 18 1_555 A U 28 1_555 -4.548 5.277 -0.934 -160.042 -19.083 -72.102 -2.801 -1.126 -3.685 9.996 -83.834 -164.804 12 AA_G8A13:U23G25_AA A 8 ? A 25 ? A 13 ? A 23 ? 1 A A 18 1_555 A U 28 1_555 A C 19 1_555 A G 27 1_555 0.272 -1.908 3.210 2.662 2.479 33.369 -3.697 -0.050 3.076 4.301 -4.619 33.561 13 AA_A13C14:G22U23_AA A 13 ? A 23 ? A 14 ? A 22 ? 1 A C 19 1_555 A G 27 1_555 A C 20 1_555 A G 26 1_555 -0.281 -2.011 3.002 0.473 8.929 30.877 -4.969 0.579 2.339 16.346 -0.866 32.115 14 AA_C14C15:G21G22_AA A 14 ? A 22 ? A 15 ? A 21 ? 1 A C 20 1_555 A G 26 1_555 A C 21 1_555 A G 24 1_555 -0.910 -1.554 3.294 2.684 -0.637 18.353 -4.476 4.269 3.180 -1.983 -8.353 18.557 15 AA_C15C16:G19G21_AA A 15 ? A 21 ? A 16 ? A 19 ? 1 B C 2 1_555 B G 41 1_555 B G 3 1_555 B C 40 1_555 0.388 -1.905 3.409 1.722 9.449 29.755 -5.259 -0.408 2.709 17.825 -3.248 31.233 16 BB_C-3G-2:C35G36_BB B -3 ? B 36 ? B -2 ? B 35 ? 1 B G 3 1_555 B C 40 1_555 B A 4 1_555 B U 39 1_555 -0.680 -1.221 2.933 -4.418 8.049 33.689 -3.097 0.552 2.645 13.577 7.453 34.883 17 BB_G-2A-1:U34C35_BB B -2 ? B 35 ? B -1 ? B 34 ? 1 B A 4 1_555 B U 39 1_555 B U 5 1_555 B A 38 1_555 0.229 -1.525 2.994 -2.334 8.017 32.000 -3.845 -0.741 2.526 14.241 4.146 33.043 18 BB_A-1U0:A33U34_BB B -1 ? B 34 ? B 0 ? B 33 ? 1 B U 5 1_555 B A 38 1_555 B G 6 1_555 B C 37 1_555 -0.060 -1.986 3.415 3.034 22.106 27.441 -6.053 0.479 1.449 39.374 -5.405 35.232 19 BB_U0G1:C32A33_BB B 0 ? B 33 ? B 1 ? B 32 ? 1 B G 6 1_555 B C 37 1_555 B G 7 1_555 B C 36 1_555 -0.307 -1.782 3.148 -4.435 7.460 33.397 -4.064 -0.109 2.716 12.717 7.560 34.475 20 BB_G1G2:C31C32_BB B 1 ? B 32 ? B 2 ? B 31 ? 1 B G 7 1_555 B C 36 1_555 B C 8 1_555 B G 35 1_555 0.011 -1.153 3.212 -1.678 4.422 33.028 -2.712 -0.286 3.032 7.728 2.933 33.356 21 BB_G2C3:G30C31_BB B 2 ? B 31 ? B 3 ? B 30 ? 1 B C 8 1_555 B G 35 1_555 B A 9 1_555 B U 34 1_555 0.000 -1.748 2.912 -0.659 10.583 31.891 -4.430 -0.087 2.234 18.628 1.160 33.564 22 BB_C3A4:U29G30_BB B 3 ? B 30 ? B 4 ? B 29 ? 1 B A 9 1_555 B U 34 1_555 B C 10 1_555 B G 33 1_555 0.591 -1.505 3.259 2.399 3.204 33.093 -3.147 -0.639 3.137 5.600 -4.193 33.327 23 BB_A4C5:G28U29_BB B 4 ? B 29 ? B 5 ? B 28 ? 1 B C 10 1_555 B G 33 1_555 B G 11 1_555 B C 32 1_555 -0.195 -1.848 3.164 6.316 22.400 31.392 -4.945 0.905 1.503 35.880 -10.117 38.903 24 BB_C5G6:C27G28_BB B 5 ? B 28 ? B 6 ? B 27 ? 1 B G 11 1_555 B C 32 1_555 B U 12 1_555 B A 31 1_555 -0.416 -0.756 3.259 -0.215 4.091 29.717 -2.288 0.760 3.132 7.930 0.416 29.992 25 BB_G6U7:A26C27_BB B 6 ? B 27 ? B 7 ? B 26 ? 1 B U 12 1_555 B A 31 1_555 B G 13 1_555 B G 30 1_555 2.248 -2.419 -1.160 -85.732 -151.934 106.361 -1.426 -1.003 -0.329 -76.448 43.137 176.676 26 BB_U7G8:G25A26_BB B 7 ? B 26 ? B 8 ? B 25 ? 1 B G 13 1_555 B G 30 1_555 B A 18 1_555 B U 28 1_555 -4.934 5.201 -0.280 -154.548 -20.481 -54.093 -2.815 -1.245 -3.859 11.095 -83.724 -158.568 27 BB_G8A13:U23G25_BB B 8 ? B 25 ? B 13 ? B 23 ? 1 B A 18 1_555 B U 28 1_555 B C 19 1_555 B G 27 1_555 -0.009 -1.903 3.152 1.082 4.347 31.001 -4.284 0.206 2.863 8.080 -2.011 31.315 28 BB_A13C14:G22U23_BB B 13 ? B 23 ? B 14 ? B 22 ? 1 B C 19 1_555 B G 27 1_555 B C 20 1_555 B G 26 1_555 -0.506 -1.757 3.306 1.042 7.994 32.619 -4.282 1.038 2.792 13.969 -1.820 33.574 29 BB_C14C15:G21G22_BB B 14 ? B 22 ? B 15 ? B 21 ? 1 B C 20 1_555 B G 26 1_555 B C 21 1_555 B G 24 1_555 -0.314 -1.225 3.281 2.459 3.258 16.571 -6.136 2.575 2.910 11.087 -8.367 17.063 30 BB_C15C16:G19G21_BB B 15 ? B 21 ? B 16 ? B 19 ? 1 C C 2 1_555 C G 41 1_555 C G 3 1_555 C C 40 1_555 -1.111 -1.780 2.654 -3.647 12.207 28.512 -4.999 1.563 1.877 23.366 6.982 31.175 31 CC_C-3G-2:C35G36_CC C -3 ? C 36 ? C -2 ? C 35 ? 1 C G 3 1_555 C C 40 1_555 C A 4 1_555 C U 39 1_555 0.039 -1.523 3.204 -0.800 4.842 35.204 -3.166 -0.175 2.974 7.958 1.315 35.534 32 CC_G-2A-1:U34C35_CC C -2 ? C 35 ? C -1 ? C 34 ? 1 C A 4 1_555 C U 39 1_555 C U 5 1_555 C A 38 1_555 0.536 -1.485 3.353 0.663 2.611 30.989 -3.272 -0.872 3.231 4.876 -1.237 31.103 33 CC_A-1U0:A33U34_CC C -1 ? C 34 ? C 0 ? C 33 ? 1 C U 5 1_555 C A 38 1_555 C G 6 1_555 C C 37 1_555 -0.227 -1.568 3.123 2.780 16.965 31.787 -4.560 0.699 2.029 28.517 -4.673 36.033 34 CC_U0G1:C32A33_CC C 0 ? C 33 ? C 1 ? C 32 ? 1 C G 6 1_555 C C 37 1_555 C G 7 1_555 C C 36 1_555 0.067 -1.303 3.151 -3.734 7.428 29.778 -3.767 -0.789 2.726 14.111 7.093 30.891 35 CC_G1G2:C31C32_CC C 1 ? C 32 ? C 2 ? C 31 ? 1 C G 7 1_555 C C 36 1_555 C C 8 1_555 C G 35 1_555 0.214 -0.984 3.192 0.560 5.771 36.669 -2.281 -0.266 3.010 9.102 -0.884 37.109 36 CC_G2C3:G30C31_CC C 2 ? C 31 ? C 3 ? C 30 ? 1 C C 8 1_555 C G 35 1_555 C A 9 1_555 C U 34 1_555 -0.216 -1.587 3.089 -2.503 10.832 31.321 -4.359 0.013 2.430 19.318 4.464 33.189 37 CC_C3A4:U29G30_CC C 3 ? C 30 ? C 4 ? C 29 ? 1 C A 9 1_555 C U 34 1_555 C C 10 1_555 C G 33 1_555 0.280 -1.511 3.183 2.041 5.434 32.518 -3.524 -0.168 2.911 9.608 -3.610 33.019 38 CC_A4C5:G28U29_CC C 4 ? C 29 ? C 5 ? C 28 ? 1 C C 10 1_555 C G 33 1_555 C G 11 1_555 C C 32 1_555 0.299 -1.864 3.074 4.252 22.960 32.690 -4.784 -0.057 1.520 35.682 -6.608 39.988 39 CC_C5G6:C27G28_CC C 5 ? C 28 ? C 6 ? C 27 ? 1 C G 11 1_555 C C 32 1_555 C U 12 1_555 C A 31 1_555 -0.361 -1.049 3.201 3.004 1.823 29.724 -2.395 1.298 3.081 3.539 -5.829 29.926 40 CC_G6U7:A26C27_CC C 6 ? C 27 ? C 7 ? C 26 ? 1 C U 12 1_555 C A 31 1_555 C G 13 1_555 C G 30 1_555 2.309 -2.303 -1.030 -86.536 -155.320 127.105 -1.311 -1.066 -0.526 -77.760 43.324 179.020 41 CC_U7G8:G25A26_CC C 7 ? C 26 ? C 8 ? C 25 ? 1 C G 13 1_555 C G 30 1_555 C A 18 1_555 C U 28 1_555 -4.562 5.169 -1.481 -159.399 -24.646 -82.642 -2.785 -1.128 -3.762 12.804 -82.809 -165.978 42 CC_G8A13:U23G25_CC C 8 ? C 25 ? C 13 ? C 23 ? 1 C A 18 1_555 C U 28 1_555 C C 19 1_555 C G 27 1_555 0.356 -2.037 3.173 1.462 1.812 32.121 -3.981 -0.393 3.070 3.270 -2.638 32.203 43 CC_A13C14:G22U23_CC C 13 ? C 23 ? C 14 ? C 22 ? 1 C C 19 1_555 C G 27 1_555 C C 20 1_555 C G 26 1_555 -0.226 -1.972 3.005 2.398 6.476 32.255 -4.420 0.748 2.549 11.492 -4.255 32.967 44 CC_C14C15:G21G22_CC C 14 ? C 22 ? C 15 ? C 21 ? 1 C C 20 1_555 C G 26 1_555 C C 21 1_555 C G 24 1_555 -0.702 -1.344 3.268 1.658 -0.603 18.444 -3.848 3.079 3.235 -1.876 -5.159 18.527 45 CC_C15C16:G19G21_CC C 15 ? C 21 ? C 16 ? C 19 ? 1 D G 1 1_555 D C 42 1_555 D C 2 1_555 D G 41 1_555 -0.538 -1.341 3.258 -2.873 0.238 34.173 -2.312 0.460 3.282 0.404 4.879 34.291 46 DD_G-4C-3:G36C37_DD D -4 ? D 37 ? D -3 ? D 36 ? 1 D C 2 1_555 D G 41 1_555 D G 3 1_555 D C 40 1_555 0.344 -1.688 3.296 -3.177 10.313 27.604 -5.296 -1.286 2.465 20.641 6.360 29.600 47 DD_C-3G-2:C35G36_DD D -3 ? D 36 ? D -2 ? D 35 ? 1 D G 3 1_555 D C 40 1_555 D A 4 1_555 D U 39 1_555 -0.799 -1.585 3.144 -2.863 5.381 33.807 -3.472 0.935 2.921 9.161 4.875 34.337 48 DD_G-2A-1:U34C35_DD D -2 ? D 35 ? D -1 ? D 34 ? 1 D A 4 1_555 D U 39 1_555 D U 5 1_555 D A 38 1_555 0.016 -1.121 3.121 -3.670 7.864 30.985 -3.310 -0.628 2.742 14.369 6.705 32.149 49 DD_A-1U0:A33U34_DD D -1 ? D 34 ? D 0 ? D 33 ? 1 D U 5 1_555 D A 38 1_555 D G 6 1_555 D C 37 1_555 0.396 -2.030 2.921 1.420 17.253 31.274 -5.183 -0.493 1.630 29.357 -2.416 35.641 50 DD_U0G1:C32A33_DD D 0 ? D 33 ? D 1 ? D 32 ? 1 D G 6 1_555 D C 37 1_555 D G 7 1_555 D C 36 1_555 -0.081 -1.921 3.268 1.014 3.170 31.177 -4.134 0.336 3.058 5.877 -1.879 31.350 51 DD_G1G2:C31C32_DD D 1 ? D 32 ? D 2 ? D 31 ? 1 D G 7 1_555 D C 36 1_555 D C 8 1_555 D G 35 1_555 0.243 -1.261 3.140 -1.426 4.283 32.976 -2.870 -0.647 2.945 7.502 2.498 33.275 52 DD_G2C3:G30C31_DD D 2 ? D 31 ? D 3 ? D 30 ? 1 D C 8 1_555 D G 35 1_555 D A 9 1_555 D U 34 1_555 -0.437 -1.621 2.965 -3.146 10.972 33.995 -3.960 0.332 2.375 18.143 5.202 35.807 53 DD_C3A4:U29G30_DD D 3 ? D 30 ? D 4 ? D 29 ? 1 D A 9 1_555 D U 34 1_555 D C 10 1_555 D G 33 1_555 0.383 -1.443 3.222 2.266 5.211 35.276 -3.073 -0.310 3.003 8.530 -3.709 35.716 54 DD_A4C5:G28U29_DD D 4 ? D 29 ? D 5 ? D 28 ? 1 D C 10 1_555 D G 33 1_555 D G 11 1_555 D C 32 1_555 0.061 -1.876 2.973 5.365 19.511 29.606 -5.173 0.482 1.483 33.681 -9.262 35.733 55 DD_C5G6:C27G28_DD D 5 ? D 28 ? D 6 ? D 27 ? 1 D G 11 1_555 D C 32 1_555 D U 12 1_555 D A 31 1_555 -0.490 -0.994 3.271 1.388 0.815 32.303 -1.927 1.123 3.222 1.463 -2.492 32.342 56 DD_G6U7:A26C27_DD D 6 ? D 27 ? D 7 ? D 26 ? 1 D U 12 1_555 D A 31 1_555 D G 13 1_555 D G 30 1_555 2.465 -2.079 -1.165 -88.409 -149.309 82.307 -1.340 -1.057 -0.366 -75.606 44.768 175.122 57 DD_U7G8:G25A26_DD D 7 ? D 26 ? D 8 ? D 25 ? 1 D G 13 1_555 D G 30 1_555 D A 18 1_555 D U 28 1_555 -4.238 4.972 -1.835 -154.648 -17.289 -98.065 -2.626 -1.108 -3.767 8.970 -80.233 -164.080 58 DD_G8A13:U23G25_DD D 8 ? D 25 ? D 13 ? D 23 ? 1 D A 18 1_555 D U 28 1_555 D C 19 1_555 D G 27 1_555 -0.362 -1.620 3.239 -0.603 0.513 32.477 -2.985 0.542 3.220 0.917 1.078 32.487 59 DD_A13C14:G22U23_DD D 13 ? D 23 ? D 14 ? D 22 ? 1 D C 19 1_555 D G 27 1_555 D C 20 1_555 D G 26 1_555 -0.494 -1.859 3.352 -0.522 3.322 32.200 -3.920 0.794 3.156 5.969 0.939 32.370 60 DD_C14C15:G21G22_DD D 14 ? D 22 ? D 15 ? D 21 ? 1 D C 20 1_555 D G 26 1_555 D C 21 1_555 D G 24 1_555 -0.250 -1.597 3.199 -0.356 3.014 18.178 -6.542 0.597 2.902 9.453 1.118 18.428 61 DD_C15C16:G19G21_DD D 15 ? D 21 ? D 16 ? D 19 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9M69 _pdbx_initial_refinement_model.details 'XBA12-XAN structure' # _space_group.name_H-M_alt 'P 1' _space_group.name_Hall 'P 1' _space_group.IT_number 1 _space_group.crystal_system triclinic _space_group.id 1 # _atom_sites.entry_id 9M6B _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.043697 _atom_sites.fract_transf_matrix[1][2] 0.000419 _atom_sites.fract_transf_matrix[1][3] 0.004242 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021420 _atom_sites.fract_transf_matrix[2][3] 0.002005 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010090 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #