data_9M6C # _entry.id 9M6C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M6C pdb_00009m6c 10.2210/pdb9m6c/pdb WWPDB D_1300057203 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-09-23 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M6C _pdbx_database_status.recvd_initial_deposition_date 2025-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, M.' 1 ? 'Huang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of xanthine/guanine RNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Huang, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (32-MER)' 10249.092 3 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 3 ? ? ? ? 3 non-polymer syn XANTHINE 152.111 3 ? ? ? ? 4 non-polymer syn 'BARIUM ION' 137.327 5 ? ? ? ? 5 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCACGUGUAUUACCCUAGUGGUCGACGUGCC _entity_poly.pdbx_seq_one_letter_code_can GGCACGUGUAUUACCCUAGUGGUCGACGUGCC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 XANTHINE XAN 4 'BARIUM ION' BA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 C n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 A n 1 11 U n 1 12 U n 1 13 A n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 A n 1 19 G n 1 20 U n 1 21 G n 1 22 G n 1 23 U n 1 24 C n 1 25 G n 1 26 A n 1 27 C n 1 28 G n 1 29 U n 1 30 G n 1 31 C n 1 32 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 32 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 XAN non-polymer . XANTHINE ? 'C5 H4 N4 O2' 152.111 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 ? ? ? A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 U 23 23 23 U U A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n B 1 1 G 1 1 ? ? ? B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 A 4 4 4 A A B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 U 7 7 7 U U B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 A 10 10 10 A A B . n B 1 11 U 11 11 11 U U B . n B 1 12 U 12 12 12 U U B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 U 17 17 17 U U B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 U 20 20 20 U U B . n B 1 21 G 21 21 21 G G B . n B 1 22 G 22 22 22 G G B . n B 1 23 U 23 23 23 U U B . n B 1 24 C 24 24 24 C C B . n B 1 25 G 25 25 25 G G B . n B 1 26 A 26 26 26 A A B . n B 1 27 C 27 27 27 C C B . n B 1 28 G 28 28 28 G G B . n B 1 29 U 29 29 29 U U B . n B 1 30 G 30 30 30 G G B . n B 1 31 C 31 31 31 C C B . n B 1 32 C 32 32 32 C C B . n C 1 1 G 1 1 ? ? ? C . n C 1 2 G 2 2 2 G G C . n C 1 3 C 3 3 3 C C C . n C 1 4 A 4 4 4 A A C . n C 1 5 C 5 5 5 C C C . n C 1 6 G 6 6 6 G G C . n C 1 7 U 7 7 7 U U C . n C 1 8 G 8 8 8 G G C . n C 1 9 U 9 9 9 U U C . n C 1 10 A 10 10 10 A A C . n C 1 11 U 11 11 11 U U C . n C 1 12 U 12 12 12 U U C . n C 1 13 A 13 13 13 A A C . n C 1 14 C 14 14 14 C C C . n C 1 15 C 15 15 15 C C C . n C 1 16 C 16 16 16 C C C . n C 1 17 U 17 17 17 U U C . n C 1 18 A 18 18 18 A A C . n C 1 19 G 19 19 19 G G C . n C 1 20 U 20 20 20 U U C . n C 1 21 G 21 21 21 G G C . n C 1 22 G 22 22 22 G G C . n C 1 23 U 23 23 23 U U C . n C 1 24 C 24 24 24 C C C . n C 1 25 G 25 25 25 G G C . n C 1 26 A 26 26 26 A A C . n C 1 27 C 27 27 27 C C C . n C 1 28 G 28 28 28 G G C . n C 1 29 U 29 29 29 U U C . n C 1 30 G 30 30 30 G G C . n C 1 31 C 31 31 31 C C C . n C 1 32 C 32 32 32 C C C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id XAN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id XAN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GTP 1 101 1 GTP GTP A . E 3 XAN 1 102 102 XAN XAN A . F 4 BA 1 103 2 BA BA A . G 2 GTP 1 101 1 GTP GTP B . H 3 XAN 1 102 102 XAN XAN B . I 4 BA 1 103 1 BA BA B . J 4 BA 1 104 5 BA BA B . K 2 GTP 1 101 1 GTP GTP C . L 3 XAN 1 102 102 XAN XAN C . M 4 BA 1 103 3 BA BA C . N 4 BA 1 104 4 BA BA C . O 5 HOH 1 201 4 HOH HOH A . P 5 HOH 1 201 3 HOH HOH B . P 5 HOH 2 202 5 HOH HOH B . P 5 HOH 3 203 1 HOH HOH B . Q 5 HOH 1 201 2 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9M6C _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.730 _cell.length_a_esd ? _cell.length_b 107.730 _cell.length_b_esd ? _cell.length_c 47.390 _cell.length_c_esd ? _cell.volume 549996.630 _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9M6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M6C _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Potassium chloride 0.02 M Barium chloride dehydrate 32% v/v (+/-)-2-Methyl-2,4-pentanediol 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 79.54 _reflns.entry_id 9M6C _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.51 _reflns.d_resolution_low 35.91 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9962 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.51 _reflns_shell.d_res_low 2.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 698 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.863 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.530 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.135 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 108.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9M6C _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.51 _refine.ls_d_res_low 35.58 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9962 _refine.ls_number_reflns_R_free 484 _refine.ls_number_reflns_R_work 9478 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.80 _refine.ls_percent_reflns_R_free 4.86 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2751 _refine.ls_R_factor_R_free 0.3085 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2733 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 45.6079 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.6352 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.51 _refine_hist.d_res_low 35.58 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 2110 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1971 _refine_hist.pdbx_number_atoms_ligand 134 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0027 ? 2334 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.8659 ? 3627 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0394 ? 477 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0046 ? 99 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 17.5025 ? 1149 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.ncs_model_details 1 'X-RAY DIFFRACTION' d_2 ens_1 0.894257800168 ? ? ? 'Torsion NCS' D A ? ? ? ? 2 'X-RAY DIFFRACTION' d_3 ens_1 1.28681242296 ? ? ? 'Torsion NCS' D A ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.51 2.87 . . 157 3068 99.81 . . . . 0.4261 . . . . . . . . . . . . . . . 0.5159 'X-RAY DIFFRACTION' 2.87 3.62 . . 146 3135 99.70 . . . . 0.3169 . . . . . . . . . . . . . . . 0.2909 'X-RAY DIFFRACTION' 3.62 35.58 . . 181 3275 99.88 . . . . 0.2405 . . . . . . . . . . . . . . . 0.2956 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 0.943183812526 0.0412088328955 -0.32970612351 -0.0987099181259 0.98223238867 -0.159611674732 0.317270622422 0.183088412355 0.930493409654 -17.5616171978 -20.3635883811 11.9072868141 ? 2 given 0.0200083492135 0.976665880431 0.213830362585 -0.999776851669 0.020994409394 -0.00234129028775 -0.0067759005132 -0.213735801343 0.976868002545 -37.6169174356 -69.3700856221 17.9589406971 ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;chain "A" ; ens_1 d_2 ;chain "B" ; ens_1 d_3 ;chain "C" ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 D GTP . . D GTP . . A GTP 101 A GTP 101 ? ? ens_1 d_1 2 A G 2 . A C 3 . A G 2 A C 3 ? ? ens_1 d_1 3 E XAN . . E XAN . . A XAN 102 A XAN 102 ? ? ens_1 d_2 1 G GTP . . G GTP . . B GTP 101 B GTP 101 ? ? ens_1 d_2 2 B G 2 . B C 3 . B G 2 B C 3 ? ? ens_1 d_2 3 H XAN . . H XAN . . B XAN 102 B XAN 102 ? ? ens_1 d_3 1 K GTP . . K GTP . . C GTP 101 C GTP 101 ? ? ens_1 d_3 2 C G 2 . C C 3 . C G 2 C C 3 ? ? ens_1 d_3 3 L XAN . . L XAN . . C XAN 102 C XAN 102 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # loop_ _struct_ncs_ens_gen.ens_id _struct_ncs_ens_gen.dom_id_1 _struct_ncs_ens_gen.dom_id_2 _struct_ncs_ens_gen.oper_id ens_1 d_2 d_1 1 ens_1 d_3 d_1 2 # _struct.entry_id 9M6C _struct.title 'Crystal structure of xanthine/guanine RNA aptamer with xanthine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M6C _struct_keywords.text 'xanthine/guanine RNA aptamer, RNA, xanthine' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 5 ? P N N 5 ? Q N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9M6C _struct_ref.pdbx_db_accession 9M6C _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M6C A 1 ? 32 ? 9M6C 1 ? 32 ? 1 32 2 1 9M6C B 1 ? 32 ? 9M6C 1 ? 32 ? 1 32 3 1 9M6C C 1 ? 32 ? 9M6C 1 ? 32 ? 1 32 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,O 1 2 A,D,E,F,O 2 1 B,G,H,I,J,P 2 2 B,G,H,I,J,P 3 1 C,K,L,M,N,Q 3 3 C,K,L,M,N,Q # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_446 -y-1,-x-1,-z+1 0.0000000000 -1.0000000000 0.0000000000 -107.7300000000 -1.0000000000 0.0000000000 0.0000000000 -107.7300000000 0.0000000000 0.0000000000 -1.0000000000 47.3900000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 2 P ? ? ? 1_555 D GTP . "O3'" ? ? A G 2 A GTP 101 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale2 covale both ? B G 2 P ? ? ? 1_555 G GTP . "O3'" ? ? B G 2 B GTP 101 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? A A 18 OP1 ? ? ? 1_555 J BA . BA ? ? A A 18 B BA 104 2_455 ? ? ? ? ? ? ? 2.817 ? ? metalc2 metalc ? ? A G 22 O6 ? ? ? 1_555 F BA . BA ? ? A G 22 A BA 103 1_555 ? ? ? ? ? ? ? 3.276 ? ? metalc3 metalc ? ? B U 17 O2 ? ? ? 1_555 J BA . BA ? ? B U 17 B BA 104 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc4 metalc ? ? B G 21 O6 ? ? ? 1_555 I BA . BA ? ? B G 21 B BA 103 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc5 metalc ? ? I BA . BA ? ? ? 1_555 P HOH . O ? ? B BA 103 B HOH 202 1_555 ? ? ? ? ? ? ? 2.964 ? ? metalc6 metalc ? ? I BA . BA ? ? ? 1_555 P HOH . O ? ? B BA 103 B HOH 203 1_555 ? ? ? ? ? ? ? 3.423 ? ? metalc7 metalc ? ? C A 10 OP2 ? ? ? 1_555 M BA . BA ? ? C A 10 C BA 103 1_555 ? ? ? ? ? ? ? 3.447 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 25 O6 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 25 N1 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog19 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 13 N7 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 13 N6 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog21 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 25 N2 ? ? ? 1_555 C U 20 O4 ? ? A G 25 C U 20 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog33 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 31 N3 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 31 O2 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 31 N4 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 29 N3 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 29 O4 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 26 N1 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 26 N6 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 8 N1 ? ? ? 1_555 B G 25 O6 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog50 hydrog ? ? B G 8 O6 ? ? ? 1_555 B G 25 N1 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog51 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 13 N7 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog52 hydrog ? ? B A 13 N1 ? ? ? 1_555 B U 23 N3 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B A 13 N6 ? ? ? 1_555 B U 23 O4 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 22 N1 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 22 O6 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 22 N2 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 21 N1 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 21 O6 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 21 N2 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 31 N3 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 31 O2 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 31 N4 ? ? C G 2 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 3 N3 ? ? ? 1_555 C G 30 N1 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 3 N4 ? ? ? 1_555 C G 30 O6 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 3 O2 ? ? ? 1_555 C G 30 N2 ? ? C C 3 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C A 4 N1 ? ? ? 1_555 C U 29 N3 ? ? C A 4 C U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C A 4 N6 ? ? ? 1_555 C U 29 O4 ? ? C A 4 C U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C C 5 N3 ? ? ? 1_555 C G 28 N1 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C C 5 N4 ? ? ? 1_555 C G 28 O6 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C C 5 O2 ? ? ? 1_555 C G 28 N2 ? ? C C 5 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 6 N1 ? ? ? 1_555 C C 27 N3 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 6 N2 ? ? ? 1_555 C C 27 O2 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 6 O6 ? ? ? 1_555 C C 27 N4 ? ? C G 6 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C U 7 N3 ? ? ? 1_555 C A 26 N1 ? ? C U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C U 7 O4 ? ? ? 1_555 C A 26 N6 ? ? C U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 8 N1 ? ? ? 1_555 C G 25 O6 ? ? C G 8 C G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog80 hydrog ? ? C G 8 O6 ? ? ? 1_555 C G 25 N1 ? ? C G 8 C G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog81 hydrog ? ? C U 11 N3 ? ? ? 1_555 C A 13 N7 ? ? C U 11 C A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog82 hydrog ? ? C U 11 O4 ? ? ? 1_555 C A 13 N6 ? ? C U 11 C A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog83 hydrog ? ? C A 13 N1 ? ? ? 1_555 C U 23 N3 ? ? C A 13 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C A 13 N6 ? ? ? 1_555 C U 23 O4 ? ? C A 13 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 22 N1 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 22 O6 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 22 N2 ? ? C C 14 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 15 N3 ? ? ? 1_555 C G 21 N1 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 15 N4 ? ? ? 1_555 C G 21 O6 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C C 15 O2 ? ? ? 1_555 C G 21 N2 ? ? C C 15 C G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C C 16 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C C 16 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C C 16 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 16 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 18 ? A A 18 ? 1_555 BA ? J BA . ? B BA 104 ? 2_455 O2 ? B U 17 ? B U 17 ? 1_555 37.5 ? 2 O6 ? B G 21 ? B G 21 ? 1_555 BA ? I BA . ? B BA 103 ? 1_555 O ? P HOH . ? B HOH 202 ? 1_555 81.5 ? 3 O6 ? B G 21 ? B G 21 ? 1_555 BA ? I BA . ? B BA 103 ? 1_555 O ? P HOH . ? B HOH 203 ? 1_555 95.7 ? 4 O ? P HOH . ? B HOH 202 ? 1_555 BA ? I BA . ? B BA 103 ? 1_555 O ? P HOH . ? B HOH 203 ? 1_555 172.7 ? # _pdbx_entry_details.entry_id 9M6C _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 B G 2 ? ? "O3'" B GTP 101 ? ? 1.93 2 1 OP1 A G 2 ? ? "O3'" A GTP 101 ? ? 1.94 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 12 ? ? "C1'" B U 12 ? ? N1 B U 12 ? ? 113.73 108.50 5.23 0.70 N 2 1 C2 B U 12 ? ? N1 B U 12 ? ? "C1'" B U 12 ? ? 125.20 117.70 7.50 1.20 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+1/2 3 y+1/2,-x+1/2,z+1/2 4 x+1/2,-y+1/2,-z+1/2 5 -x+1/2,y+1/2,-z+1/2 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -40.6144231512 -14.7500909201 -5.21757726726 0.857568839085 ? 0.307871075114 ? -0.0861778029279 ? 1.99577838762 ? -0.264144069622 ? 0.845136382043 ? 2.17086157694 ? -3.08540528559 ? 6.17029174111 ? 4.24927225996 ? -2.48331748691 ? 5.66344611858 ? 1.1601416707 ? 4.13245868387 ? 1.49242466733 ? -1.66300866048 ? -2.24120902624 ? -0.0441359080542 ? 0.766493262252 ? 0.404957665676 ? 0.890577940415 ? 2 'X-RAY DIFFRACTION' ? refined -48.4586436205 -3.98349258865 2.67227398399 0.923426851553 ? 0.310263888012 ? 0.269839915771 ? 1.51690593634 ? 0.468157946037 ? 1.29514308397 ? 6.01377624588 ? 4.53565657489 ? -0.815017672885 ? 3.82142392196 ? -0.202838938751 ? 8.06474494781 ? -0.163023963618 ? 1.96272239078 ? 1.54570119692 ? -0.464143105913 ? 0.110769653132 ? 2.81715696489 ? -0.79367197139 ? -1.28869748474 ? 0.133020661158 ? 3 'X-RAY DIFFRACTION' ? refined -35.8490840257 -18.7799032441 -2.6053181918 0.939774838192 ? 0.133995832913 ? 0.278221406425 ? 1.37904214727 ? -0.227903985873 ? 0.919000692706 ? 3.64895442523 ? 0.977663949006 ? -1.34825767385 ? 2.21595151807 ? 0.310985177788 ? 5.60344207228 ? -0.145650256643 ? 2.22628670968 ? -0.97845982193 ? -0.468563122396 ? -0.513643052566 ? -0.445232044566 ? 1.54852691265 ? 0.0071118673597 ? 0.544504562224 ? 4 'X-RAY DIFFRACTION' ? refined -47.5457210588 -32.1431535264 -6.70491757186 1.22402314134 ? 0.286065765949 ? 0.317005821695 ? 0.849957374769 ? 0.289227992523 ? 2.46490856319 ? 4.76375968097 ? 0.836797807082 ? 0.419401944304 ? 1.26504877418 ? 2.41995885976 ? 4.77387843096 ? -0.00717217287984 ? -0.469755345118 ? 2.36325402849 ? 0.265315317469 ? 0.151699072764 ? -2.16908459955 ? -0.377002971861 ? 1.36510106223 ? -0.512453735104 ? 5 'X-RAY DIFFRACTION' ? refined -63.6366519671 -22.4641401835 -4.63340515254 1.00708284369 ? 0.137613614388 ? 0.0737141916344 ? 0.75610423938 ? -0.00548906261822 ? 0.677668251085 ? 7.61041707521 ? 2.36168168345 ? 2.08878628096 ? 9.0099777457 ? -3.15553400761 ? 8.60467174212 ? -0.679815099131 ? -0.408150812449 ? 0.308379168169 ? -0.0369874309009 ? 0.518495988629 ? 1.13654932106 ? 0.0815693577063 ? -0.434140839935 ? 0.153154832362 ? 6 'X-RAY DIFFRACTION' ? refined -51.2329803171 -34.9968471753 -5.33557388756 1.24657907832 ? 0.210914289342 ? 0.375167737016 ? 0.682914467695 ? 0.15614453589 ? 1.55801916399 ? 4.85776410809 ? -0.509281877866 ? 0.0568746428888 ? 2.77425380858 ? -0.205116686332 ? 4.58174743038 ? -0.599177439023 ? -0.238984008762 ? -1.02081596349 ? -0.942183374706 ? 0.127525909165 ? -2.50331664049 ? 1.05396090306 ? 1.06256525501 ? 0.280014279692 ? 7 'X-RAY DIFFRACTION' ? refined -55.4442746825 -37.3516188251 16.424459681 1.96661539455 ? -0.200485279195 ? 0.506407599545 ? 1.31708688259 ? -0.706281441897 ? 1.82236062671 ? 4.18416649465 ? 1.00627957532 ? 1.77729217462 ? 1.45892331219 ? -1.37209354507 ? 3.62414993022 ? -0.124985103236 ? -0.0332261685361 ? -2.14093095743 ? -0.616144991333 ? 0.644386497816 ? -2.09268243775 ? 1.91661981852 ? 1.88197960077 ? -0.721729834459 ? 8 'X-RAY DIFFRACTION' ? refined -52.5046008956 -21.2215097693 15.9991014727 1.15766161813 ? -0.382009715846 ? 0.263897764242 ? 1.09834438874 ? -0.284841765894 ? 0.734529097685 ? 7.37126396699 ? 3.95120865491 ? -1.48347290834 ? 8.61277881698 ? -4.85032898131 ? 3.19630706362 ? -0.498697501319 ? 1.2472846333 ? -1.04526700345 ? 0.247018823209 ? 0.350577097517 ? -1.2770672515 ? -0.482469500142 ? -0.724269988598 ? -0.246268600119 ? 9 'X-RAY DIFFRACTION' ? refined -45.3890134982 -20.6521064644 27.5972600375 1.15395385048 ? -0.163674730871 ? 0.155554254746 ? 0.86452888395 ? -0.0412345361448 ? 1.11572131968 ? 1.94123920633 ? -0.956697087198 ? 2.50970317034 ? 2.17118593978 ? -0.818484712771 ? 4.28595891602 ? -0.198425015362 ? 1.14830027872 ? 1.48461213135 ? 1.37442335858 ? -0.30837823353 ? -1.23769365526 ? -0.572135887717 ? 0.309747100009 ? 0.558842768337 ? 10 'X-RAY DIFFRACTION' ? refined -38.3420096766 -20.8345763802 16.5676528018 1.36319222305 ? -0.546910675749 ? 0.62208732185 ? 1.33090695744 ? -0.20128052439 ? 1.49852153894 ? 6.33390299007 ? 1.94810419194 ? 0.62996079367 ? 8.62384425244 ? 2.20733744738 ? 6.19861580838 ? 0.522121710705 ? 1.71040855953 ? -0.263308707689 ? 0.732797382647 ? -0.191051339933 ? -0.448423866504 ? -1.44764795396 ? 1.41293790472 ? -0.341912150593 ? 11 'X-RAY DIFFRACTION' ? refined -57.2878917594 -33.9324250641 19.5360682205 1.21012936051 ? -0.284212819485 ? 0.395274730571 ? 1.08178326069 ? -0.46145930258 ? 1.36999399547 ? 8.58853485806 ? 0.388497453905 ? 1.34289043407 ? 5.17593856528 ? -2.36505076229 ? 3.13865936399 ? 0.895218906411 ? -0.584593546869 ? -1.96204507805 ? -0.231898861692 ? -0.91888534207 ? 0.438677235962 ? 0.888728250401 ? -0.444286592824 ? 0.36756374473 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 B ? A 2 ? B ? A 11 ? ? ;chain 'A' and (resid 2 through 11 ) ; 2 'X-RAY DIFFRACTION' 2 B ? A 12 ? B ? A 21 ? ? ;chain 'A' and (resid 12 through 21 ) ; 3 'X-RAY DIFFRACTION' 3 B ? A 22 ? B ? A 32 ? ? ;chain 'A' and (resid 22 through 32 ) ; 4 'X-RAY DIFFRACTION' 4 E ? B 2 ? E ? B 6 ? ? ;chain 'B' and (resid 2 through 6 ) ; 5 'X-RAY DIFFRACTION' 5 E ? B 7 ? E ? B 21 ? ? ;chain 'B' and (resid 7 through 21 ) ; 6 'X-RAY DIFFRACTION' 6 E ? B 22 ? E ? B 32 ? ? ;chain 'B' and (resid 22 through 32 ) ; 7 'X-RAY DIFFRACTION' 7 H ? C 2 ? H ? C 6 ? ? ;chain 'C' and (resid 2 through 6 ) ; 8 'X-RAY DIFFRACTION' 8 H ? C 7 ? H ? C 11 ? ? ;chain 'C' and (resid 7 through 11 ) ; 9 'X-RAY DIFFRACTION' 9 H ? C 12 ? H ? C 16 ? ? ;chain 'C' and (resid 12 through 16 ) ; 10 'X-RAY DIFFRACTION' 10 H ? C 17 ? H ? C 21 ? ? ;chain 'C' and (resid 17 through 21 ) ; 11 'X-RAY DIFFRACTION' 11 H ? C 22 ? H ? C 32 ? ? ;chain 'C' and (resid 22 through 32 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 1 ? A G 1 2 1 Y 1 B G 1 ? B G 1 3 1 Y 1 C G 1 ? C G 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 GTP PG P N N 112 GTP O1G O N N 113 GTP O2G O N N 114 GTP O3G O N N 115 GTP O3B O N N 116 GTP PB P N N 117 GTP O1B O N N 118 GTP O2B O N N 119 GTP O3A O N N 120 GTP PA P N N 121 GTP O1A O N N 122 GTP O2A O N N 123 GTP "O5'" O N N 124 GTP "C5'" C N N 125 GTP "C4'" C N R 126 GTP "O4'" O N N 127 GTP "C3'" C N S 128 GTP "O3'" O N N 129 GTP "C2'" C N R 130 GTP "O2'" O N N 131 GTP "C1'" C N R 132 GTP N9 N Y N 133 GTP C8 C Y N 134 GTP N7 N Y N 135 GTP C5 C Y N 136 GTP C6 C N N 137 GTP O6 O N N 138 GTP N1 N N N 139 GTP C2 C N N 140 GTP N2 N N N 141 GTP N3 N N N 142 GTP C4 C Y N 143 GTP HOG2 H N N 144 GTP HOG3 H N N 145 GTP HOB2 H N N 146 GTP HOA2 H N N 147 GTP "H5'" H N N 148 GTP "H5''" H N N 149 GTP "H4'" H N N 150 GTP "H3'" H N N 151 GTP "HO3'" H N N 152 GTP "H2'" H N N 153 GTP "HO2'" H N N 154 GTP "H1'" H N N 155 GTP H8 H N N 156 GTP HN1 H N N 157 GTP HN21 H N N 158 GTP HN22 H N N 159 HOH O O N N 160 HOH H1 H N N 161 HOH H2 H N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 XAN N9 N Y N 197 XAN C4 C Y N 198 XAN N3 N Y N 199 XAN C2 C Y N 200 XAN O2 O N N 201 XAN N1 N Y N 202 XAN C6 C Y N 203 XAN O6 O N N 204 XAN C5 C Y N 205 XAN N7 N Y N 206 XAN C8 C Y N 207 XAN HN9 H N N 208 XAN HN3 H N N 209 XAN HN1 H N N 210 XAN H8 H N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 XAN N9 C4 sing Y N 203 XAN N9 C8 sing Y N 204 XAN N9 HN9 sing N N 205 XAN C4 N3 sing Y N 206 XAN C4 C5 doub Y N 207 XAN N3 C2 sing Y N 208 XAN N3 HN3 sing N N 209 XAN C2 O2 doub N N 210 XAN C2 N1 sing Y N 211 XAN N1 C6 sing Y N 212 XAN N1 HN1 sing N N 213 XAN C6 O6 doub N N 214 XAN C6 C5 sing Y N 215 XAN C5 N7 sing Y N 216 XAN N7 C8 doub Y N 217 XAN C8 H8 sing N N 218 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9M6C 'double helix' 9M6C 'a-form double helix' 9M6C 'hairpin loop' 9M6C 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 31 1_555 -0.180 -0.183 -0.553 -7.896 -2.598 0.733 1 A_G2:C31_A A 2 ? A 31 ? 19 1 1 A C 3 1_555 A G 30 1_555 0.226 -0.128 -0.275 0.794 -2.107 3.925 2 A_C3:G30_A A 3 ? A 30 ? 19 1 1 A A 4 1_555 A U 29 1_555 -0.042 -0.140 0.118 -5.031 -7.012 5.345 3 A_A4:U29_A A 4 ? A 29 ? 20 1 1 A C 5 1_555 A G 28 1_555 0.234 -0.189 0.153 1.923 -6.245 2.581 4 A_C5:G28_A A 5 ? A 28 ? 19 1 1 A G 6 1_555 A C 27 1_555 -0.234 -0.146 -0.434 -4.849 -9.791 2.835 5 A_G6:C27_A A 6 ? A 27 ? 19 1 1 A U 7 1_555 A A 26 1_555 0.004 -0.126 -0.280 3.855 -10.255 0.810 6 A_U7:A26_A A 7 ? A 26 ? 20 1 1 A G 8 1_555 A G 25 1_555 1.054 1.511 -0.344 -23.626 3.050 -176.522 7 A_G8:G25_A A 8 ? A 25 ? 3 2 1 A A 13 1_555 A U 23 1_555 0.110 0.028 -0.099 2.680 0.631 -2.754 8 A_A13:U23_A A 13 ? A 23 ? 20 1 1 A C 14 1_555 A G 22 1_555 0.202 -0.106 -0.081 1.528 -3.826 3.506 9 A_C14:G22_A A 14 ? A 22 ? 19 1 1 A C 15 1_555 A G 21 1_555 0.110 -0.135 0.026 1.156 0.893 -1.282 10 A_C15:G21_A A 15 ? A 21 ? 19 1 1 A C 16 1_555 A G 19 1_555 0.205 -0.164 0.323 2.527 -2.772 2.653 11 A_C16:G19_A A 16 ? A 19 ? 19 1 1 B G 2 1_555 B C 31 1_555 -0.232 -0.290 -0.995 -14.361 -6.478 3.131 12 B_G2:C31_B B 2 ? B 31 ? 19 1 1 B C 3 1_555 B G 30 1_555 0.179 -0.184 -0.583 -1.333 -2.718 2.654 13 B_C3:G30_B B 3 ? B 30 ? 19 1 1 B A 4 1_555 B U 29 1_555 -0.090 -0.181 0.205 -4.060 -6.503 3.003 14 B_A4:U29_B B 4 ? B 29 ? 20 1 1 B C 5 1_555 B G 28 1_555 0.229 -0.094 0.125 0.314 -6.508 4.738 15 B_C5:G28_B B 5 ? B 28 ? 19 1 1 B G 6 1_555 B C 27 1_555 -0.230 -0.117 -0.196 -6.743 -8.716 3.410 16 B_G6:C27_B B 6 ? B 27 ? 19 1 1 B U 7 1_555 B A 26 1_555 0.012 -0.108 -0.153 4.131 -7.261 1.765 17 B_U7:A26_B B 7 ? B 26 ? 20 1 1 B G 8 1_555 B G 25 1_555 1.173 1.170 -0.388 -21.112 2.189 -173.854 18 B_G8:G25_B B 8 ? B 25 ? 3 2 1 B A 13 1_555 B U 23 1_555 0.070 0.006 0.124 2.199 1.758 -1.743 19 B_A13:U23_B B 13 ? B 23 ? 20 1 1 B C 14 1_555 B G 22 1_555 0.183 -0.127 0.134 -0.154 0.213 2.250 20 B_C14:G22_B B 14 ? B 22 ? 19 1 1 B C 15 1_555 B G 21 1_555 0.182 -0.114 0.134 0.128 3.185 1.651 21 B_C15:G21_B B 15 ? B 21 ? 19 1 1 B C 16 1_555 B G 19 1_555 0.165 -0.111 0.267 5.527 0.226 4.071 22 B_C16:G19_B B 16 ? B 19 ? 19 1 1 C G 2 1_555 C C 31 1_555 -0.178 -0.190 -0.779 -3.504 4.020 -4.055 23 C_G2:C31_C C 2 ? C 31 ? 19 1 1 C C 3 1_555 C G 30 1_555 0.150 -0.127 -0.521 4.588 0.962 0.018 24 C_C3:G30_C C 3 ? C 30 ? 19 1 1 C A 4 1_555 C U 29 1_555 0.007 -0.116 0.300 -3.916 -4.678 1.890 25 C_A4:U29_C C 4 ? C 29 ? 20 1 1 C C 5 1_555 C G 28 1_555 0.188 -0.193 0.340 1.994 -3.731 0.574 26 C_C5:G28_C C 5 ? C 28 ? 19 1 1 C G 6 1_555 C C 27 1_555 -0.210 -0.154 -0.042 -3.545 -11.241 0.815 27 C_G6:C27_C C 6 ? C 27 ? 19 1 1 C U 7 1_555 C A 26 1_555 -0.007 -0.124 0.157 1.819 -13.103 1.470 28 C_U7:A26_C C 7 ? C 26 ? 20 1 1 C G 8 1_555 C G 25 1_555 1.167 1.088 -0.271 -18.967 2.248 -170.870 29 C_G8:G25_C C 8 ? C 25 ? 3 2 1 C A 13 1_555 C U 23 1_555 0.077 -0.023 -0.118 -1.854 -1.001 -0.927 30 C_A13:U23_C C 13 ? C 23 ? 20 1 1 C C 14 1_555 C G 22 1_555 0.172 -0.135 0.021 -0.822 -5.546 2.094 31 C_C14:G22_C C 14 ? C 22 ? 19 1 1 C C 15 1_555 C G 21 1_555 0.202 -0.162 0.120 -2.773 1.734 -0.155 32 C_C15:G21_C C 15 ? C 21 ? 19 1 1 C C 16 1_555 C G 19 1_555 0.157 -0.164 0.486 2.971 3.149 5.373 33 C_C16:G19_C C 16 ? C 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 31 1_555 A C 3 1_555 A G 30 1_555 0.795 -1.146 3.017 -1.076 4.414 34.333 -2.535 -1.484 2.827 7.436 1.812 34.623 1 AA_G2C3:G30C31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A C 3 1_555 A G 30 1_555 A A 4 1_555 A U 29 1_555 0.130 -1.371 3.036 -2.882 16.325 31.978 -4.167 -0.554 2.095 27.449 4.846 35.919 2 AA_C3A4:U29G30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A A 4 1_555 A U 29 1_555 A C 5 1_555 A G 28 1_555 -0.320 -1.123 3.002 -1.448 3.936 32.317 -2.619 0.343 2.860 7.035 2.588 32.580 3 AA_A4C5:G28U29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A C 5 1_555 A G 28 1_555 A G 6 1_555 A C 27 1_555 0.085 -1.633 3.052 3.237 16.861 31.227 -4.689 0.247 1.944 28.762 -5.522 35.532 4 AA_C5G6:C27G28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A G 6 1_555 A C 27 1_555 A U 7 1_555 A A 26 1_555 -0.514 -1.134 3.153 0.991 3.229 33.015 -2.498 1.058 3.015 5.663 -1.738 33.182 5 AA_G6U7:A26C27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A U 7 1_555 A A 26 1_555 A G 8 1_555 A G 25 1_555 3.501 -0.290 -0.846 -86.328 -156.378 -71.914 0.105 1.773 0.667 78.438 -43.301 -178.887 6 AA_U7G8:G25A26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A G 8 1_555 A G 25 1_555 A A 13 1_555 A U 23 1_555 -4.632 4.986 -1.139 -155.327 -27.684 -66.711 -2.755 -1.061 -3.695 14.710 -82.535 -161.471 7 AA_G8A13:U23G25_AA A 8 ? A 25 ? A 13 ? A 23 ? 1 A A 13 1_555 A U 23 1_555 A C 14 1_555 A G 22 1_555 0.457 -1.943 3.172 -0.081 2.474 34.422 -3.640 -0.782 3.028 4.174 0.137 34.508 8 AA_A13C14:G22U23_AA A 13 ? A 23 ? A 14 ? A 22 ? 1 A C 14 1_555 A G 22 1_555 A C 15 1_555 A G 21 1_555 -0.732 -1.937 3.261 2.298 6.353 33.646 -4.219 1.580 2.805 10.839 -3.920 34.298 9 AA_C14C15:G21G22_AA A 14 ? A 22 ? A 15 ? A 21 ? 1 A C 15 1_555 A G 21 1_555 A C 16 1_555 A G 19 1_555 -0.651 -1.324 3.329 1.220 2.507 19.468 -5.069 2.487 3.088 7.365 -3.585 19.665 10 AA_C15C16:G19G21_AA A 15 ? A 21 ? A 16 ? A 19 ? 1 B G 2 1_555 B C 31 1_555 B C 3 1_555 B G 30 1_555 0.244 -0.975 2.953 -2.364 2.388 33.420 -2.036 -0.766 2.855 4.140 4.098 33.584 11 BB_G2C3:G30C31_BB B 2 ? B 31 ? B 3 ? B 30 ? 1 B C 3 1_555 B G 30 1_555 B A 4 1_555 B U 29 1_555 -0.101 -1.220 2.986 -6.790 15.216 32.533 -3.727 -0.630 2.197 25.205 11.247 36.449 12 BB_C3A4:U29G30_BB B 3 ? B 30 ? B 4 ? B 29 ? 1 B A 4 1_555 B U 29 1_555 B C 5 1_555 B G 28 1_555 0.116 -1.349 3.087 -0.603 3.021 30.787 -3.068 -0.325 2.941 5.673 1.132 30.937 13 BB_A4C5:G28U29_BB B 4 ? B 29 ? B 5 ? B 28 ? 1 B C 5 1_555 B G 28 1_555 B G 6 1_555 B C 27 1_555 -0.022 -1.543 2.917 2.431 18.520 30.599 -4.573 0.306 1.726 31.662 -4.157 35.733 14 BB_C5G6:C27G28_BB B 5 ? B 28 ? B 6 ? B 27 ? 1 B G 6 1_555 B C 27 1_555 B U 7 1_555 B A 26 1_555 -0.410 -1.168 3.067 1.823 4.092 32.084 -2.752 1.028 2.873 7.359 -3.279 32.387 15 BB_G6U7:A26C27_BB B 6 ? B 27 ? B 7 ? B 26 ? 1 B U 7 1_555 B A 26 1_555 B G 8 1_555 B G 25 1_555 3.111 -1.159 -1.330 -88.928 -153.750 1.569 -1.392 -1.086 -0.572 -77.893 45.053 177.616 16 BB_U7G8:G25A26_BB B 7 ? B 26 ? B 8 ? B 25 ? 1 B G 8 1_555 B G 25 1_555 B A 13 1_555 B U 23 1_555 -4.707 5.152 -0.802 -155.634 -23.511 -65.544 -2.795 -1.171 -3.687 12.521 -82.886 -161.033 17 BB_G8A13:U23G25_BB B 8 ? B 25 ? B 13 ? B 23 ? 1 B A 13 1_555 B U 23 1_555 B C 14 1_555 B G 22 1_555 0.026 -1.982 3.202 -1.080 2.824 34.966 -3.691 -0.198 3.035 4.689 1.794 35.092 18 BB_A13C14:G22U23_BB B 13 ? B 23 ? B 14 ? B 22 ? 1 B C 14 1_555 B G 22 1_555 B C 15 1_555 B G 21 1_555 -0.252 -1.748 3.120 2.036 5.723 32.698 -3.924 0.750 2.762 10.058 -3.578 33.242 19 BB_C14C15:G21G22_BB B 14 ? B 22 ? B 15 ? B 21 ? 1 B C 15 1_555 B G 21 1_555 B C 16 1_555 B G 19 1_555 -0.761 -1.538 3.130 -0.132 4.754 19.472 -6.412 2.132 2.686 13.791 0.383 20.039 20 BB_C15C16:G19G21_BB B 15 ? B 21 ? B 16 ? B 19 ? 1 C G 2 1_555 C C 31 1_555 C C 3 1_555 C G 30 1_555 0.275 -1.240 3.037 -2.900 7.022 33.461 -3.082 -0.870 2.696 12.004 4.958 34.289 21 CC_G2C3:G30C31_CC C 2 ? C 31 ? C 3 ? C 30 ? 1 C C 3 1_555 C G 30 1_555 C A 4 1_555 C U 29 1_555 -0.069 -1.601 3.019 -5.309 21.114 32.618 -4.415 -0.404 1.703 33.365 8.389 39.051 22 CC_C3A4:U29G30_CC C 3 ? C 30 ? C 4 ? C 29 ? 1 C A 4 1_555 C U 29 1_555 C C 5 1_555 C G 28 1_555 -0.342 -1.329 3.084 -0.793 2.389 32.548 -2.750 0.481 2.989 4.254 1.412 32.642 23 CC_A4C5:G28U29_CC C 4 ? C 29 ? C 5 ? C 28 ? 1 C C 5 1_555 C G 28 1_555 C G 6 1_555 C C 27 1_555 0.046 -1.530 3.043 2.931 12.909 31.611 -4.323 0.313 2.259 22.502 -5.109 34.205 24 CC_C5G6:C27G28_CC C 5 ? C 28 ? C 6 ? C 27 ? 1 C G 6 1_555 C C 27 1_555 C U 7 1_555 C A 26 1_555 -0.227 -1.149 3.279 1.706 0.839 34.287 -2.076 0.651 3.237 1.423 -2.891 34.338 25 CC_G6U7:A26C27_CC C 6 ? C 27 ? C 7 ? C 26 ? 1 C U 7 1_555 C A 26 1_555 C G 8 1_555 C G 25 1_555 3.298 -0.647 -0.150 -86.577 -154.716 -126.512 0.343 1.638 0.337 77.484 -43.359 -178.782 26 CC_U7G8:G25A26_CC C 7 ? C 26 ? C 8 ? C 25 ? 1 C G 8 1_555 C G 25 1_555 C A 13 1_555 C U 23 1_555 -4.843 5.271 -0.881 -156.517 -21.329 -64.725 -2.849 -1.143 -3.911 11.349 -83.280 -161.419 27 CC_G8A13:U23G25_CC C 8 ? C 25 ? C 13 ? C 23 ? 1 C A 13 1_555 C U 23 1_555 C C 14 1_555 C G 22 1_555 0.342 -1.847 3.173 0.525 0.768 34.307 -3.247 -0.500 3.137 1.301 -0.890 34.319 28 CC_A13C14:G22U23_CC C 13 ? C 23 ? C 14 ? C 22 ? 1 C C 14 1_555 C G 22 1_555 C C 15 1_555 C G 21 1_555 -0.493 -1.739 3.123 0.562 6.480 34.252 -3.796 0.900 2.750 10.880 -0.944 34.845 29 CC_C14C15:G21G22_CC C 14 ? C 22 ? C 15 ? C 21 ? 1 C C 15 1_555 C G 21 1_555 C C 16 1_555 C G 19 1_555 -0.593 -1.376 3.165 -1.090 4.553 20.970 -5.398 1.184 2.832 12.312 2.948 21.480 30 CC_C15C16:G19G21_CC C 15 ? C 21 ? C 16 ? C 19 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9M69 _pdbx_initial_refinement_model.details 'XBA12-XAN structure' # _space_group.name_H-M_alt 'P 42 21 2' _space_group.name_Hall 'P 4n 2n' _space_group.IT_number 94 _space_group.crystal_system tetragonal _space_group.id 1 # _atom_sites.entry_id 9M6C _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.009282 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009282 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021101 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.pdbx_scat_Cromer_Mann_a5 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.pdbx_scat_Cromer_Mann_b5 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BA ? ? 19.74734 17.36848 10.46572 2.59260 11.00365 3.48182 0.37122 21.22664 173.83427 0.01072 -5.18349695206 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 2.65751 1.07808 1.49091 -4.24107 0.71379 14.78076 0.77678 42.08684 -0.00029 0.23954 4.29798316956 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 11.89378 3.27748 1.85809 0.85893 0.91299 0.00016 10.23272 30.34469 0.65606 0.21729 -11.8049020767 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 2.96043 2.50882 0.63785 0.72284 1.14276 14.18226 5.93686 0.11273 34.95848 0.39024 0.0270140003413 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 3.10693 3.23514 1.14889 0.78398 0.67695 19.86808 6.96025 0.17004 65.69351 0.63076 0.0461359992623 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 1.95054 4.14693 1.49456 1.52204 5.72971 0.90814 27.04495 0.07128 67.52019 1.98117 0.155232995749 ;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #