HEADER DE NOVO PROTEIN 13-MAR-25 9M9G TITLE NMR STRUCTURE OF PROTEINMPNN-DESIGNED UBIQUITIN VARIANT R10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMR STRUCTURE OF PROTEINMPNN-DESIGNED UBIQUITIN VARIANT COMPND 3 R10; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS R10, PROTEINMPNN, UBIQUITIN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.-P.WU,L.-Y.CHEN,W.-C.CHUANG REVDAT 1 11-FEB-26 9M9G 0 JRNL AUTH K.-P.WU JRNL TITL PROTEINMPNN-DESIGNED UBIQUITIN VARIANT R10 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057471. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 80 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] NMR REMARK 210 STRUCTURE OF PROTEINMPNN- REMARK 210 DESIGNED UBIQUITIN VARIANT R10, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CA)CO; 3D H(CCO)NH; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D CCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, I-PINE, ARTINA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 68 152.58 -44.34 REMARK 500 1 LYS A 79 105.85 57.58 REMARK 500 2 GLU A 68 151.33 -46.15 REMARK 500 3 GLU A 68 153.83 -42.31 REMARK 500 4 GLU A 68 152.83 -40.86 REMARK 500 5 SER A 58 20.02 -78.04 REMARK 500 5 GLU A 68 152.93 -42.53 REMARK 500 5 SER A 82 -158.74 59.54 REMARK 500 6 LYS A 51 28.62 48.27 REMARK 500 6 GLU A 68 153.08 -43.34 REMARK 500 7 GLU A 68 152.74 -46.90 REMARK 500 8 GLU A 68 153.29 -41.78 REMARK 500 8 SER A 82 172.34 66.35 REMARK 500 9 GLU A 68 152.81 -40.97 REMARK 500 9 SER A 80 -61.17 169.04 REMARK 500 10 LYS A 51 29.21 49.15 REMARK 500 10 GLU A 68 152.96 -42.19 REMARK 500 10 LYS A 79 -175.01 50.40 REMARK 500 10 SER A 80 54.64 -140.57 REMARK 500 11 GLU A 68 152.68 -45.93 REMARK 500 11 SER A 80 -61.36 171.93 REMARK 500 12 GLU A 68 152.67 -42.50 REMARK 500 12 LYS A 79 -173.28 51.51 REMARK 500 12 SER A 80 -54.99 -150.64 REMARK 500 13 GLU A 68 152.11 -43.05 REMARK 500 14 SER A 2 178.83 59.59 REMARK 500 14 GLU A 68 153.76 -44.36 REMARK 500 14 LYS A 79 138.79 65.74 REMARK 500 15 GLU A 68 153.02 -42.39 REMARK 500 15 LYS A 79 -174.27 45.28 REMARK 500 16 GLU A 68 152.01 -46.13 REMARK 500 17 GLU A 68 152.62 -43.48 REMARK 500 17 LEU A 78 64.97 -102.66 REMARK 500 18 GLU A 68 150.72 -46.47 REMARK 500 18 ASN A 69 3.12 80.75 REMARK 500 18 LEU A 78 58.36 -106.77 REMARK 500 18 LYS A 79 90.88 58.02 REMARK 500 18 SER A 82 -170.55 67.10 REMARK 500 19 GLU A 68 152.91 -38.98 REMARK 500 20 GLU A 68 152.98 -40.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36738 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF PROTEINMPNN-DESIGNED UBIQUITIN VARIANT R10 DBREF 9M9G A 1 83 PDB 9M9G 9M9G 1 83 SEQRES 1 A 83 GLY SER GLY GLY SER MET LYS ILE TYR VAL LYS LEU GLN SEQRES 2 A 83 ASP GLY THR VAL ILE GLU LEU GLU VAL GLU PRO SER ASP SEQRES 3 A 83 THR ILE LEU GLU VAL LYS GLU LYS ILE TYR GLU LYS THR SEQRES 4 A 83 GLY ILE PRO PRO GLU ASP GLN ILE LEU ILE TYR LYS GLY SEQRES 5 A 83 LYS VAL LEU GLU ASP SER LYS THR LEU ALA ASP TYR ASN SEQRES 6 A 83 ILE GLN GLU ASN ASP VAL LEU TYR LEU VAL ARG ARG LEU SEQRES 7 A 83 LYS SER PRO SER ARG HELIX 1 AA1 THR A 27 GLY A 40 1 14 HELIX 2 AA2 LEU A 61 ASN A 65 5 5 SHEET 1 AA1 5 VAL A 17 VAL A 22 0 SHEET 2 AA1 5 MET A 6 LYS A 11 -1 N ILE A 8 O LEU A 20 SHEET 3 AA1 5 ASP A 70 ARG A 76 1 O LEU A 72 N TYR A 9 SHEET 4 AA1 5 GLN A 46 TYR A 50 -1 N ILE A 47 O VAL A 75 SHEET 5 AA1 5 LYS A 53 VAL A 54 -1 O LYS A 53 N TYR A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 137 0 0 2 5 0 0 6 661 1 0 7 END