HEADER HYDROLASE 17-MAR-25 9MBL TITLE 2-OXO-DATP HYDROLYSIS IN HUMAN MTH1(G2K MUTANT) CRYSTAL USING MN2+: TITLE 2 THE ES-2M COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 42-197; COMPND 5 SYNONYM: MUTT HOMOLOGUE-1,2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE, COMPND 6 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 7 EC: 3.6.1.55,3.6.1.56; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDIZED PURINE NUCLEOSIDE TRIPHOSPHATE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HIRATA,T.NAKAMURA REVDAT 1 30-JUL-25 9MBL 0 JRNL AUTH K.HIRATA,K.FUJIMIYA,A.OSTERMANN,T.E.SCHRADER,T.HIROMOTO, JRNL AUTH 2 M.GOTO,T.ARIMORI,Y.HIRANO,K.KUSAKA,T.TAMADA,T.NAKAMURA JRNL TITL NEUTRON AND TIME-RESOLVED X-RAY CRYSTALLOGRAPHY REVEAL THE JRNL TITL 2 SUBSTRATE RECOGNITION AND CATALYTIC MECHANISM OF HUMAN NUDIX JRNL TITL 3 HYDROLASE MTH1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 85122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40674425 JRNL DOI 10.1073/PNAS.2510085122 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2200 - 3.7900 1.00 2841 144 0.1462 0.1839 REMARK 3 2 3.7900 - 3.0100 1.00 2712 123 0.1264 0.1712 REMARK 3 3 3.0100 - 2.6300 1.00 2671 137 0.1444 0.1926 REMARK 3 4 2.6300 - 2.3900 1.00 2644 149 0.1450 0.1688 REMARK 3 5 2.3900 - 2.2100 1.00 2623 142 0.1337 0.1592 REMARK 3 6 2.2100 - 2.0800 1.00 2646 136 0.1269 0.1838 REMARK 3 7 2.0800 - 1.9800 1.00 2598 149 0.1238 0.1633 REMARK 3 8 1.9800 - 1.8900 1.00 2609 130 0.1216 0.1554 REMARK 3 9 1.8900 - 1.8200 1.00 2628 131 0.1229 0.1906 REMARK 3 10 1.8200 - 1.7600 1.00 2593 136 0.1209 0.1877 REMARK 3 11 1.7600 - 1.7000 1.00 2607 130 0.1200 0.1984 REMARK 3 12 1.7000 - 1.6500 1.00 2592 133 0.1209 0.1885 REMARK 3 13 1.6500 - 1.6100 1.00 2612 143 0.1226 0.1655 REMARK 3 14 1.6100 - 1.5700 1.00 2586 137 0.1224 0.1780 REMARK 3 15 1.5700 - 1.5400 1.00 2563 152 0.1290 0.1779 REMARK 3 16 1.5400 - 1.5000 1.00 2571 148 0.1247 0.1944 REMARK 3 17 1.5000 - 1.4700 1.00 2586 142 0.1327 0.1941 REMARK 3 18 1.4700 - 1.4500 1.00 2541 157 0.1417 0.2257 REMARK 3 19 1.4500 - 1.4200 1.00 2618 141 0.1496 0.2299 REMARK 3 20 1.4200 - 1.4000 1.00 2540 151 0.1660 0.2432 REMARK 3 21 1.4000 - 1.3700 0.96 2473 123 0.1766 0.2252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.133 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3118 REMARK 3 ANGLE : 0.969 4242 REMARK 3 CHIRALITY : 0.074 422 REMARK 3 PLANARITY : 0.006 553 REMARK 3 DIHEDRAL : 17.150 1202 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300055994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57873 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 44.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, CACODYLATE, NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.25150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.81550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.81550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.25150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 92 12.05 -144.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 6.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 36 O REMARK 620 2 GLU A 56 OE2 76.1 REMARK 620 3 6U4 A 201 O2B 102.4 97.9 REMARK 620 4 6U4 A 201 O1A 97.5 167.8 73.0 REMARK 620 5 HOH A 355 O 86.7 90.8 168.7 99.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 56 OE2 91.6 REMARK 620 3 6U4 A 201 O2B 107.4 87.4 REMARK 620 4 HOH A 308 O 172.4 81.4 69.6 REMARK 620 5 HOH A 348 O 96.3 116.5 146.0 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 6U4 A 201 O1B 98.9 REMARK 620 3 6U4 A 201 O1B 103.7 11.1 REMARK 620 4 HOH A 312 O 166.2 90.7 87.6 REMARK 620 5 HOH A 317 O 80.1 83.3 74.6 111.0 REMARK 620 6 HOH A 331 O 82.4 96.3 106.8 86.7 162.3 REMARK 620 7 HOH A 361 O 91.9 162.9 151.9 81.2 85.5 98.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6U4 A 201 O2B REMARK 620 2 6U4 A 201 O1A 84.4 REMARK 620 3 HOH A 304 O 90.1 83.3 REMARK 620 4 HOH A 308 O 82.9 163.7 86.5 REMARK 620 5 HOH A 350 O 84.8 91.1 172.8 97.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 36 O REMARK 620 2 GLU B 56 OE2 81.8 REMARK 620 3 6U4 B 201 O2B 104.3 100.6 REMARK 620 4 6U4 B 201 O1A 110.1 168.1 76.8 REMARK 620 5 HOH B 396 O 170.0 91.0 70.1 77.2 REMARK 620 6 HOH B 426 O 87.9 86.3 166.7 94.2 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 36 O REMARK 620 2 GLU B 56 OE2 75.6 REMARK 620 3 GLU B 100 OE2 154.2 78.9 REMARK 620 4 6U4 B 201 O2B 106.9 99.4 81.0 REMARK 620 5 6U4 B 201 O1A 114.9 167.5 90.0 84.4 REMARK 620 6 HOH B 426 O 82.5 78.2 88.5 169.5 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE1 REMARK 620 2 GLU B 56 OE2 86.8 REMARK 620 3 6U4 B 201 O2B 116.9 92.0 REMARK 620 4 HOH B 346 O 83.7 106.8 153.3 REMARK 620 5 HOH B 417 O 165.6 82.4 73.2 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE2 REMARK 620 2 6U4 B 201 O1B 102.7 REMARK 620 3 HOH B 351 O 100.7 154.2 REMARK 620 4 HOH B 377 O 72.0 87.9 89.4 REMARK 620 N 1 2 3 DBREF 9MBL A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 9MBL B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 9MBL LYS A 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQADV 9MBL LYS B 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQRES 1 A 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 A 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 A 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 A 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 A 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 A 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 A 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 A 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 A 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 A 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 A 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 A 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 B 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 B 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 B 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 B 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 B 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 B 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 B 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 B 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 B 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 B 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 B 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL HET 6U4 A 201 45 HET MN A 202 1 HET MN A 203 1 HET NA A 204 1 HET NA A 205 1 HET 6U4 B 201 31 HET MN B 202 1 HET MN B 203 1 HET NA B 204 1 HET NA B 205 1 HETNAM 6U4 [[(2R,3S,5R)-5-(6-AZANYL-2-OXIDANYLIDENE-1H-PURIN-9- HETNAM 2 6U4 YL)-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 6U4 PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETSYN 6U4 2-OXO-DATP FORMUL 3 6U4 2(C10 H16 N5 O13 P3) FORMUL 4 MN 4(MN 2+) FORMUL 6 NA 4(NA 1+) FORMUL 13 HOH *409(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 TRP A 117 PRO A 118 5 2 HELIX 4 AA4 ASP A 119 GLN A 129 1 11 HELIX 5 AA5 THR B 44 GLY B 58 1 15 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 TRP B 117 PRO B 118 5 2 HELIX 8 AA8 ASP B 119 GLN B 129 1 11 SHEET 1 AA1 3 TRP A 32 ASN A 33 0 SHEET 2 AA1 3 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA1 3 MET A 101 GLN A 107 -1 O PHE A 106 N VAL A 18 SHEET 1 AA2 7 TRP A 32 ASN A 33 0 SHEET 2 AA2 7 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA2 7 SER A 4 LEU A 13 -1 N VAL A 12 O LEU A 19 SHEET 4 AA2 7 LEU A 80 THR A 88 1 O ASP A 82 N ARG A 5 SHEET 5 AA2 7 HIS A 65 PHE A 74 -1 N ILE A 70 O VAL A 83 SHEET 6 AA2 7 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 AA2 7 THR A 144 VAL A 153 -1 O LEU A 146 N LYS A 138 SHEET 1 AA3 3 TRP B 32 ASN B 33 0 SHEET 2 AA3 3 ARG B 17 LYS B 23 -1 N GLY B 21 O ASN B 33 SHEET 3 AA3 3 MET B 101 GLN B 107 -1 O PHE B 106 N VAL B 18 SHEET 1 AA4 7 TRP B 32 ASN B 33 0 SHEET 2 AA4 7 ARG B 17 LYS B 23 -1 N GLY B 21 O ASN B 33 SHEET 3 AA4 7 SER B 4 LEU B 13 -1 N VAL B 12 O LEU B 19 SHEET 4 AA4 7 LEU B 80 GLN B 92 1 O ASP B 82 N ARG B 5 SHEET 5 AA4 7 THR B 60 PHE B 74 -1 N ALA B 63 O ASP B 89 SHEET 6 AA4 7 LYS B 132 GLN B 140 1 O PHE B 139 N GLU B 73 SHEET 7 AA4 7 THR B 144 VAL B 153 -1 O THR B 144 N GLN B 140 LINK O GLY A 36 MN B MN A 202 1555 1555 2.44 LINK OE1 GLU A 52 MN B MN A 203 1555 1555 2.59 LINK OE2 GLU A 52 NA NA A 204 1555 1555 2.42 LINK OE2BGLU A 56 MN B MN A 202 1555 1555 2.00 LINK OE2BGLU A 56 MN B MN A 203 1555 1555 2.43 LINK O2BB6U4 A 201 MN B MN A 202 1555 1555 2.46 LINK O1AB6U4 A 201 MN B MN A 202 1555 1555 1.97 LINK O2BB6U4 A 201 MN B MN A 203 1555 1555 2.47 LINK O1BA6U4 A 201 NA NA A 204 1555 1555 2.39 LINK O1BB6U4 A 201 NA NA A 204 1555 1555 2.50 LINK O2BA6U4 A 201 NA A NA A 205 1555 1555 2.25 LINK O1AA6U4 A 201 NA A NA A 205 1555 1555 2.39 LINK MN B MN A 202 O BHOH A 355 1555 1555 2.15 LINK MN B MN A 203 O HOH A 308 1555 1555 2.57 LINK MN B MN A 203 O HOH A 348 1555 1555 2.53 LINK NA NA A 204 O HOH A 312 1555 1555 2.42 LINK NA NA A 204 O AHOH A 317 1555 1555 2.40 LINK NA NA A 204 O HOH A 331 1555 1555 2.42 LINK NA NA A 204 O HOH A 361 1555 1555 2.38 LINK NA A NA A 205 O AHOH A 304 1555 1555 2.35 LINK NA A NA A 205 O HOH A 308 1555 1555 2.61 LINK NA A NA A 205 O AHOH A 350 1555 1555 2.43 LINK O GLY B 36 MN B MN B 202 1555 1555 2.30 LINK O GLY B 36 NA A NA B 205 1555 1555 2.39 LINK OE1 GLU B 52 MN B MN B 203 1555 1555 2.35 LINK OE2 GLU B 52 NA NA B 204 1555 1555 2.41 LINK OE2 GLU B 56 MN B MN B 202 1555 1555 2.12 LINK OE2 GLU B 56 MN B MN B 203 1555 1555 2.57 LINK OE2 GLU B 56 NA A NA B 205 1555 1555 2.34 LINK OE2AGLU B 100 NA A NA B 205 1555 1555 2.44 LINK O2B 6U4 B 201 MN B MN B 202 1555 1555 2.53 LINK O1A 6U4 B 201 MN B MN B 202 1555 1555 2.52 LINK O2B 6U4 B 201 MN B MN B 203 1555 1555 2.41 LINK O1B 6U4 B 201 NA NA B 204 1555 1555 2.63 LINK O2B 6U4 B 201 NA A NA B 205 1555 1555 2.36 LINK O1A 6U4 B 201 NA A NA B 205 1555 1555 2.31 LINK MN B MN B 202 O BHOH B 396 1555 1555 2.49 LINK MN B MN B 202 O HOH B 426 1555 1555 2.27 LINK MN B MN B 203 O HOH B 346 1555 1555 2.17 LINK MN B MN B 203 O BHOH B 417 1555 1555 2.53 LINK NA NA B 204 O HOH B 351 1555 1555 2.52 LINK NA NA B 204 O HOH B 377 1555 1555 2.79 LINK NA A NA B 205 O HOH B 426 1555 1555 2.42 CRYST1 46.503 47.357 123.631 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008089 0.00000 CONECT 375 3000 CONECT 497 3001 CONECT 498 3002 CONECT 542 3000 3001 CONECT 1860 3035 3038 CONECT 1982 3036 CONECT 1983 3037 CONECT 2027 3035 3036 3038 CONECT 2407 3038 CONECT 2955 2957 2959 2961 2969 CONECT 2956 2958 2960 2962 2970 CONECT 2957 2955 CONECT 2958 2956 CONECT 2959 2955 CONECT 2960 2956 CONECT 2961 2955 CONECT 2962 2956 CONECT 2963 2965 2967 2969 2977 CONECT 2964 2966 2968 2970 2978 CONECT 2965 2963 3002 CONECT 2966 2964 3002 CONECT 2967 2963 3003 CONECT 2968 2964 3000 3001 CONECT 2969 2955 2963 CONECT 2970 2956 2964 CONECT 2971 2973 2975 2977 2979 CONECT 2972 2974 2976 2978 2980 CONECT 2973 2971 CONECT 2974 2972 CONECT 2975 2971 3003 CONECT 2976 2972 3000 CONECT 2977 2963 2971 CONECT 2978 2964 2972 CONECT 2979 2971 2981 CONECT 2980 2972 2982 CONECT 2981 2979 2983 CONECT 2982 2980 2983 CONECT 2983 2981 2982 2984 2985 CONECT 2984 2983 2988 CONECT 2985 2983 2986 2987 CONECT 2986 2985 CONECT 2987 2985 2988 CONECT 2988 2984 2987 2989 CONECT 2989 2988 2990 2998 CONECT 2990 2989 2991 CONECT 2991 2990 2992 CONECT 2992 2991 2993 2998 CONECT 2993 2992 2994 2995 CONECT 2994 2993 CONECT 2995 2993 2996 CONECT 2996 2995 2997 2999 CONECT 2997 2996 2998 CONECT 2998 2989 2992 2997 CONECT 2999 2996 CONECT 3000 375 542 2968 2976 CONECT 3000 3096 CONECT 3001 497 542 2968 3047 CONECT 3001 3088 CONECT 3002 498 2965 2966 3052 CONECT 3002 3057 3071 3102 CONECT 3003 2967 2975 3043 3047 CONECT 3003 3090 CONECT 3004 3005 3006 3007 3011 CONECT 3005 3004 CONECT 3006 3004 CONECT 3007 3004 CONECT 3008 3009 3010 3011 3015 CONECT 3009 3008 3037 CONECT 3010 3008 3035 3036 3038 CONECT 3011 3004 3008 CONECT 3012 3013 3014 3015 3016 CONECT 3013 3012 CONECT 3014 3012 3035 3038 CONECT 3015 3008 3012 CONECT 3016 3012 3017 CONECT 3017 3016 3018 CONECT 3018 3017 3019 3020 CONECT 3019 3018 3023 CONECT 3020 3018 3021 3022 CONECT 3021 3020 CONECT 3022 3020 3023 CONECT 3023 3019 3022 3024 CONECT 3024 3023 3025 3033 CONECT 3025 3024 3026 CONECT 3026 3025 3027 CONECT 3027 3026 3028 3033 CONECT 3028 3027 3029 3030 CONECT 3029 3028 CONECT 3030 3028 3031 CONECT 3031 3030 3032 3034 CONECT 3032 3031 3033 CONECT 3033 3024 3027 3032 CONECT 3034 3031 CONECT 3035 1860 2027 3010 3014 CONECT 3035 3358 3388 CONECT 3036 1982 2027 3010 3307 CONECT 3036 3379 CONECT 3037 1983 3009 3312 3338 CONECT 3038 1860 2027 2407 3010 CONECT 3038 3014 3388 CONECT 3043 3003 CONECT 3047 3001 3003 CONECT 3052 3002 CONECT 3057 3002 CONECT 3071 3002 CONECT 3088 3001 CONECT 3090 3003 CONECT 3096 3000 CONECT 3102 3002 CONECT 3307 3036 CONECT 3312 3037 CONECT 3338 3037 CONECT 3358 3035 CONECT 3379 3036 CONECT 3388 3035 3038 MASTER 345 0 10 8 20 0 0 6 3021 2 115 24 END