HEADER HYDROLASE 17-MAR-25 9MBM TITLE 2-OXO-DATP HYDROLYSIS IN HUMAN MTH1(G2K MUTANT) CRYSTAL USING MN2+: TITLE 2 THE ES/EP-3M COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 42-197; COMPND 5 SYNONYM: MUTT HOMOLOGUE-1,2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE, COMPND 6 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 7 EC: 3.6.1.55,3.6.1.56; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDIZED PURINE NUCLEOSIDE TRIPHOSPHATE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HIRATA,T.NAKAMURA REVDAT 1 30-JUL-25 9MBM 0 JRNL AUTH K.HIRATA,K.FUJIMIYA,A.OSTERMANN,T.E.SCHRADER,T.HIROMOTO, JRNL AUTH 2 M.GOTO,T.ARIMORI,Y.HIRANO,K.KUSAKA,T.TAMADA,T.NAKAMURA JRNL TITL NEUTRON AND TIME-RESOLVED X-RAY CRYSTALLOGRAPHY REVEAL THE JRNL TITL 2 SUBSTRATE RECOGNITION AND CATALYTIC MECHANISM OF HUMAN NUDIX JRNL TITL 3 HYDROLASE MTH1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 85122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40674425 JRNL DOI 10.1073/PNAS.2510085122 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9300 - 3.7800 1.00 2803 169 0.1467 0.1700 REMARK 3 2 3.7800 - 3.0000 1.00 2704 125 0.1247 0.1562 REMARK 3 3 3.0000 - 2.6200 1.00 2671 113 0.1501 0.1807 REMARK 3 4 2.6200 - 2.3800 1.00 2633 148 0.1475 0.1831 REMARK 3 5 2.3800 - 2.2100 1.00 2595 163 0.1343 0.1883 REMARK 3 6 2.2100 - 2.0800 1.00 2610 141 0.1208 0.1841 REMARK 3 7 2.0800 - 1.9700 1.00 2611 138 0.1178 0.1690 REMARK 3 8 1.9700 - 1.8900 1.00 2598 122 0.1173 0.1737 REMARK 3 9 1.8900 - 1.8200 1.00 2604 135 0.1225 0.1781 REMARK 3 10 1.8200 - 1.7500 0.99 2588 136 0.1170 0.1884 REMARK 3 11 1.7500 - 1.7000 0.99 2571 129 0.1211 0.2092 REMARK 3 12 1.7000 - 1.6500 1.00 2561 157 0.1193 0.1795 REMARK 3 13 1.6500 - 1.6100 0.99 2575 139 0.1201 0.1648 REMARK 3 14 1.6100 - 1.5700 0.99 2572 134 0.1201 0.2008 REMARK 3 15 1.5700 - 1.5300 0.99 2520 161 0.1253 0.1917 REMARK 3 16 1.5300 - 1.5000 0.99 2579 134 0.1311 0.2167 REMARK 3 17 1.5000 - 1.4700 0.99 2526 135 0.1482 0.2047 REMARK 3 18 1.4700 - 1.4400 0.97 2501 133 0.1704 0.2580 REMARK 3 19 1.4400 - 1.4200 0.91 2351 129 0.1933 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3113 REMARK 3 ANGLE : 0.943 4254 REMARK 3 CHIRALITY : 0.076 428 REMARK 3 PLANARITY : 0.006 550 REMARK 3 DIHEDRAL : 25.965 1190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300055995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 36.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, CACODYLATE, NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.04550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.73350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.73350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.04550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 92 29.34 -146.12 REMARK 500 GLN A 92 29.34 -153.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 483 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 36 O REMARK 620 2 GLU A 56 OE1 84.7 REMARK 620 3 6U4 A 201 O2B 103.5 98.8 REMARK 620 4 6U4 A 201 O1A 99.2 171.6 87.6 REMARK 620 5 IGU A 202 OP2 96.7 177.1 78.4 10.4 REMARK 620 6 HOH A 304 O 174.1 89.5 76.6 86.7 89.2 REMARK 620 7 HOH A 374 O 93.0 85.7 16.1 101.4 91.6 85.7 REMARK 620 8 HOH A 398 O 83.2 87.1 171.3 85.9 95.6 97.3 172.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 56 OE1 91.3 REMARK 620 3 GLU A 100 OE1 163.4 78.6 REMARK 620 4 6U4 A 201 O2B 106.9 85.3 85.6 REMARK 620 5 HOH A 312 O 88.1 109.4 83.0 159.0 REMARK 620 6 HOH A 341 O 109.6 156.6 83.1 78.9 82.3 REMARK 620 7 HOH A 374 O 96.8 85.2 95.5 10.1 164.6 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 205 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 6U4 A 201 O1B 105.1 REMARK 620 3 HOH A 302 O 167.4 65.5 REMARK 620 4 HOH A 341 O 100.6 76.9 85.8 REMARK 620 5 HOH A 356 O 88.9 98.5 84.5 170.2 REMARK 620 6 HOH A 387 O 95.5 146.8 96.7 73.9 107.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 36 O REMARK 620 2 GLU B 56 OE1 88.5 REMARK 620 3 6U4 B 201 O2B 100.6 102.2 REMARK 620 4 6U4 B 201 O1A 104.7 166.3 72.4 REMARK 620 5 IGU B 202 OP2 105.0 165.1 81.7 9.5 REMARK 620 6 HOH B 318 O 169.1 81.3 78.1 85.3 85.6 REMARK 620 7 HOH B 350 O 90.1 85.5 19.6 90.9 100.4 85.4 REMARK 620 8 HOH B 378 O 85.6 88.3 167.9 96.1 86.6 97.7 172.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE1 REMARK 620 2 GLU B 56 OE1 92.9 REMARK 620 3 6U4 B 201 O2B 103.8 87.3 REMARK 620 4 HOH B 337 O 87.9 161.2 74.3 REMARK 620 5 HOH B 350 O 93.9 79.2 13.0 82.0 REMARK 620 6 HOH B 360 O 91.3 121.9 146.7 76.8 158.0 REMARK 620 N 1 2 3 4 5 DBREF 9MBM A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 9MBM B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQADV 9MBM LYS A 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQADV 9MBM LYS B 2 UNP P36639 GLY 43 ENGINEERED MUTATION SEQRES 1 A 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 A 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 A 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 A 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 A 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 A 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 A 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 A 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 A 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 A 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 A 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 A 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 156 MET LYS ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 B 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 B 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 B 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 B 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 B 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 B 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 B 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 B 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 B 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 B 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 B 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL HET 6U4 A 201 31 HET IGU A 202 23 HET MN A 203 1 HET MN A 204 1 HET MN A 205 1 HET 6U4 B 201 31 HET IGU B 202 23 HET MN B 203 1 HET MN B 204 1 HETNAM 6U4 [[(2R,3S,5R)-5-(6-AZANYL-2-OXIDANYLIDENE-1H-PURIN-9- HETNAM 2 6U4 YL)-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 6U4 PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE HETNAM IGU 2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETSYN 6U4 2-OXO-DATP FORMUL 3 6U4 2(C10 H16 N5 O13 P3) FORMUL 4 IGU 2(C10 H14 N5 O7 P) FORMUL 5 MN 5(MN 2+) FORMUL 12 HOH *349(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 TRP A 117 PRO A 118 5 2 HELIX 4 AA4 ASP A 119 GLN A 129 1 11 HELIX 5 AA5 THR B 44 GLY B 58 1 15 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 TRP B 117 PRO B 118 5 2 HELIX 8 AA8 ASP B 119 GLN B 129 1 11 SHEET 1 AA1 3 TRP A 32 ASN A 33 0 SHEET 2 AA1 3 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA1 3 MET A 101 GLN A 107 -1 O PHE A 106 N VAL A 18 SHEET 1 AA2 7 TRP A 32 ASN A 33 0 SHEET 2 AA2 7 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA2 7 SER A 4 LEU A 13 -1 N VAL A 12 O LEU A 19 SHEET 4 AA2 7 LEU A 80 THR A 88 1 O PHE A 86 N LEU A 9 SHEET 5 AA2 7 HIS A 65 PHE A 74 -1 N ILE A 70 O VAL A 83 SHEET 6 AA2 7 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 AA2 7 THR A 144 VAL A 153 -1 O ASP A 147 N LYS A 138 SHEET 1 AA3 3 TRP B 32 ASN B 33 0 SHEET 2 AA3 3 ARG B 17 LYS B 23 -1 N GLY B 21 O ASN B 33 SHEET 3 AA3 3 MET B 101 GLN B 107 -1 O PHE B 106 N VAL B 18 SHEET 1 AA4 7 TRP B 32 ASN B 33 0 SHEET 2 AA4 7 ARG B 17 LYS B 23 -1 N GLY B 21 O ASN B 33 SHEET 3 AA4 7 SER B 4 LEU B 13 -1 N VAL B 12 O LEU B 19 SHEET 4 AA4 7 LEU B 80 GLN B 92 1 O ASP B 82 N ARG B 5 SHEET 5 AA4 7 THR B 60 PHE B 74 -1 N ALA B 63 O ASP B 89 SHEET 6 AA4 7 LYS B 132 GLN B 140 1 O PHE B 139 N GLU B 73 SHEET 7 AA4 7 THR B 144 VAL B 153 -1 O THR B 144 N GLN B 140 LINK O GLY A 36 MN MN A 203 1555 1555 2.26 LINK OE1 GLU A 52 MN MN A 204 1555 1555 2.13 LINK OE2 GLU A 52 MN MN A 205 1555 1555 2.20 LINK OE1 GLU A 56 MN MN A 203 1555 1555 2.04 LINK OE1 GLU A 56 MN MN A 204 1555 1555 2.35 LINK OE1CGLU A 100 MN MN A 204 1555 1555 2.47 LINK O2BA6U4 A 201 MN MN A 203 1555 1555 2.07 LINK O1AA6U4 A 201 MN MN A 203 1555 1555 2.28 LINK O2BA6U4 A 201 MN MN A 204 1555 1555 2.25 LINK O1BA6U4 A 201 MN MN A 205 1555 1555 2.47 LINK OP2BIGU A 202 MN MN A 203 1555 1555 1.87 LINK MN MN A 203 O HOH A 304 1555 1555 2.43 LINK MN MN A 203 O BHOH A 374 1555 1555 2.11 LINK MN MN A 203 O HOH A 398 1555 1555 2.19 LINK MN MN A 204 O HOH A 312 1555 1555 1.90 LINK MN MN A 204 O HOH A 341 1555 1555 2.15 LINK MN MN A 204 O BHOH A 374 1555 1555 1.78 LINK MN MN A 205 O HOH A 302 1555 1555 2.43 LINK MN MN A 205 O HOH A 341 1555 1555 2.35 LINK MN MN A 205 O HOH A 356 1555 1555 2.17 LINK MN MN A 205 O HOH A 387 1555 1555 2.28 LINK O GLY B 36 MN MN B 203 1555 1555 2.22 LINK OE1 GLU B 52 MN MN B 204 1555 1555 2.27 LINK OE1 GLU B 56 MN MN B 203 1555 1555 2.01 LINK OE1 GLU B 56 MN MN B 204 1555 1555 2.38 LINK O2BA6U4 B 201 MN MN B 203 1555 1555 2.28 LINK O1AA6U4 B 201 MN MN B 203 1555 1555 2.18 LINK O2BA6U4 B 201 MN MN B 204 1555 1555 2.46 LINK OP2BIGU B 202 MN MN B 203 1555 1555 2.43 LINK MN MN B 203 O HOH B 318 1555 1555 2.25 LINK MN MN B 203 O BHOH B 350 1555 1555 2.01 LINK MN MN B 203 O HOH B 378 1555 1555 2.07 LINK MN MN B 204 O HOH B 337 1555 1555 2.54 LINK MN MN B 204 O BHOH B 350 1555 1555 1.85 LINK MN MN B 204 O HOH B 360 1555 1555 1.92 CRYST1 46.091 47.374 123.467 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008099 0.00000 CONECT 299 2963 CONECT 421 2964 CONECT 422 2965 CONECT 456 2963 2964 CONECT 849 2964 CONECT 1792 3020 CONECT 1914 3021 CONECT 1958 3020 3021 CONECT 2909 2910 2911 2912 2916 CONECT 2910 2909 CONECT 2911 2909 CONECT 2912 2909 CONECT 2913 2914 2915 2916 2920 CONECT 2914 2913 2965 CONECT 2915 2913 2963 2964 CONECT 2916 2909 2913 CONECT 2917 2918 2919 2920 2921 CONECT 2918 2917 CONECT 2919 2917 2963 CONECT 2920 2913 2917 CONECT 2921 2917 2922 CONECT 2922 2921 2923 CONECT 2923 2922 2924 2925 CONECT 2924 2923 2928 CONECT 2925 2923 2926 2927 CONECT 2926 2925 CONECT 2927 2925 2928 CONECT 2928 2924 2927 2929 CONECT 2929 2928 2930 2938 CONECT 2930 2929 2931 CONECT 2931 2930 2932 CONECT 2932 2931 2933 2938 CONECT 2933 2932 2934 2935 CONECT 2934 2933 CONECT 2935 2933 2936 CONECT 2936 2935 2937 2939 CONECT 2937 2936 2938 CONECT 2938 2929 2932 2937 CONECT 2939 2936 CONECT 2940 2941 2942 2943 2944 CONECT 2941 2940 CONECT 2942 2940 2963 CONECT 2943 2940 CONECT 2944 2940 2945 CONECT 2945 2944 2946 CONECT 2946 2945 2947 2948 CONECT 2947 2946 2951 CONECT 2948 2946 2949 2950 CONECT 2949 2948 CONECT 2950 2948 2951 CONECT 2951 2947 2950 2952 CONECT 2952 2951 2953 2962 CONECT 2953 2952 2954 CONECT 2954 2953 2957 CONECT 2955 2956 2957 2958 CONECT 2956 2955 CONECT 2957 2954 2955 2962 CONECT 2958 2955 2959 CONECT 2959 2958 2960 2961 CONECT 2960 2959 CONECT 2961 2959 2962 CONECT 2962 2952 2957 2961 CONECT 2963 299 456 2915 2919 CONECT 2963 2942 3025 3096 3121 CONECT 2964 421 456 849 2915 CONECT 2964 3033 3063 3096 CONECT 2965 422 2914 3023 3063 CONECT 2965 3078 3109 CONECT 2966 2967 2968 2969 2973 CONECT 2967 2966 CONECT 2968 2966 CONECT 2969 2966 CONECT 2970 2971 2972 2973 2977 CONECT 2971 2970 CONECT 2972 2970 3020 3021 CONECT 2973 2966 2970 CONECT 2974 2975 2976 2977 2978 CONECT 2975 2974 CONECT 2976 2974 3020 CONECT 2977 2970 2974 CONECT 2978 2974 2979 CONECT 2979 2978 2980 CONECT 2980 2979 2981 2982 CONECT 2981 2980 2985 CONECT 2982 2980 2983 2984 CONECT 2983 2982 CONECT 2984 2982 2985 CONECT 2985 2981 2984 2986 CONECT 2986 2985 2987 2995 CONECT 2987 2986 2988 CONECT 2988 2987 2989 CONECT 2989 2988 2990 2995 CONECT 2990 2989 2991 2992 CONECT 2991 2990 CONECT 2992 2990 2993 CONECT 2993 2992 2994 2996 CONECT 2994 2993 2995 CONECT 2995 2986 2989 2994 CONECT 2996 2993 CONECT 2997 2998 2999 3000 3001 CONECT 2998 2997 CONECT 2999 2997 3020 CONECT 3000 2997 CONECT 3001 2997 3002 CONECT 3002 3001 3003 CONECT 3003 3002 3004 3005 CONECT 3004 3003 3008 CONECT 3005 3003 3006 3007 CONECT 3006 3005 CONECT 3007 3005 3008 CONECT 3008 3004 3007 3009 CONECT 3009 3008 3010 3019 CONECT 3010 3009 3011 CONECT 3011 3010 3014 CONECT 3012 3013 3014 3015 CONECT 3013 3012 CONECT 3014 3011 3012 3019 CONECT 3015 3012 3016 CONECT 3016 3015 3017 3018 CONECT 3017 3016 CONECT 3018 3016 3019 CONECT 3019 3009 3014 3018 CONECT 3020 1792 1958 2972 2976 CONECT 3020 2999 3226 3258 3286 CONECT 3021 1914 1958 2972 3245 CONECT 3021 3258 3268 CONECT 3023 2965 CONECT 3025 2963 CONECT 3033 2964 CONECT 3063 2964 2965 CONECT 3078 2965 CONECT 3096 2963 2964 CONECT 3109 2965 CONECT 3121 2963 CONECT 3226 3020 CONECT 3245 3021 CONECT 3258 3020 3021 CONECT 3268 3021 CONECT 3286 3020 MASTER 318 0 9 8 20 0 0 6 3004 2 139 24 END