data_9MFU # _entry.id 9MFU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MFU pdb_00009mfu 10.2210/pdb9mfu/pdb WWPDB D_1000290893 ? ? EMDB EMD-48237 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-07 ? 2 'Structure model' 1 1 2025-05-14 ? 3 'Structure model' 1 2 2025-07-09 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin 3 3 'Structure model' citation 4 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_em_admin.last_update' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.title' 10 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MFU _pdbx_database_status.recvd_initial_deposition_date 2024-12-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of helical fibers formed by (NAP)FFGPQYQP' _pdbx_database_related.db_id EMD-48237 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zia, A.' 1 ? 'Qiao, Y.' 2 ? 'Xu, B.' 3 ? 'Wang, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e202425456 _citation.page_last e202425456 _citation.title 'Intrinsically Disordered Peptide Nanofibers from a Structured Motif Within Proteins.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202425456 _citation.pdbx_database_id_PubMed 40294067 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qiao, Y.' 1 ? primary 'Zia, A.' 2 ? primary 'Shy, A.' 3 ? primary 'Wu, G.' 4 ? primary 'Chu, M.' 5 ? primary 'Liu, Z.' 6 ? primary 'Wang, F.' 7 ? primary 'Xu, B.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description '(I7L)FFGPQYQP' _entity.formula_weight 1151.267 _entity.pdbx_number_of_molecules 7 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(I7L)FFGPQYQP' _entity_poly.pdbx_seq_one_letter_code_can XFFGPQYQP _entity_poly.pdbx_strand_id A,B,D,E,F,G,X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 I7L n 1 2 PHE n 1 3 PHE n 1 4 GLY n 1 5 PRO n 1 6 GLN n 1 7 TYR n 1 8 GLN n 1 9 PRO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 I7L non-polymer . '2-naphthalen-2-ylethanoic acid' ? 'C12 H10 O2' 186.207 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 I7L 1 1 1 I7L NAP A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 PRO 9 9 ? ? ? A . n B 1 1 I7L 1 1 1 I7L NAP B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 GLN 6 6 ? ? ? B . n B 1 7 TYR 7 7 ? ? ? B . n B 1 8 GLN 8 8 ? ? ? B . n B 1 9 PRO 9 9 ? ? ? B . n C 1 1 I7L 1 1 1 I7L NAP D . n C 1 2 PHE 2 2 2 PHE PHE D . n C 1 3 PHE 3 3 3 PHE PHE D . n C 1 4 GLY 4 4 4 GLY GLY D . n C 1 5 PRO 5 5 5 PRO PRO D . n C 1 6 GLN 6 6 6 GLN GLN D . n C 1 7 TYR 7 7 7 TYR TYR D . n C 1 8 GLN 8 8 8 GLN GLN D . n C 1 9 PRO 9 9 ? ? ? D . n D 1 1 I7L 1 1 1 I7L NAP E . n D 1 2 PHE 2 2 2 PHE PHE E . n D 1 3 PHE 3 3 3 PHE PHE E . n D 1 4 GLY 4 4 4 GLY GLY E . n D 1 5 PRO 5 5 5 PRO PRO E . n D 1 6 GLN 6 6 6 GLN GLN E . n D 1 7 TYR 7 7 7 TYR TYR E . n D 1 8 GLN 8 8 8 GLN GLN E . n D 1 9 PRO 9 9 ? ? ? E . n E 1 1 I7L 1 1 1 I7L NAP F . n E 1 2 PHE 2 2 2 PHE PHE F . n E 1 3 PHE 3 3 3 PHE PHE F . n E 1 4 GLY 4 4 4 GLY GLY F . n E 1 5 PRO 5 5 5 PRO PRO F . n E 1 6 GLN 6 6 6 GLN GLN F . n E 1 7 TYR 7 7 7 TYR TYR F . n E 1 8 GLN 8 8 ? ? ? F . n E 1 9 PRO 9 9 ? ? ? F . n F 1 1 I7L 1 1 1 I7L NAP G . n F 1 2 PHE 2 2 2 PHE PHE G . n F 1 3 PHE 3 3 3 PHE PHE G . n F 1 4 GLY 4 4 4 GLY GLY G . n F 1 5 PRO 5 5 5 PRO PRO G . n F 1 6 GLN 6 6 6 GLN GLN G . n F 1 7 TYR 7 7 7 TYR TYR G . n F 1 8 GLN 8 8 8 GLN GLN G . n F 1 9 PRO 9 9 ? ? ? G . n G 1 1 I7L 1 1 1 I7L NAP X . n G 1 2 PHE 2 2 2 PHE PHE X . n G 1 3 PHE 3 3 3 PHE PHE X . n G 1 4 GLY 4 4 4 GLY GLY X . n G 1 5 PRO 5 5 5 PRO PRO X . n G 1 6 GLN 6 6 6 GLN GLN X . n G 1 7 TYR 7 7 7 TYR TYR X . n G 1 8 GLN 8 8 ? ? ? X . n G 1 9 PRO 9 9 ? ? ? X . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id I7L _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id I7L _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9MFU _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MFU _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MFU _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 4088 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.734 ? 5408 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 14.524 ? 456 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.028 ? 296 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.010 ? 648 ? f_plane_restr ? ? # _struct.entry_id 9MFU _struct.title 'Cryo-EM of helical fibers formed by (NAP)FFGPQYQP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MFU _struct_keywords.text 'peptide fiber, helical polymer, protein fibril' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9MFU _struct_ref.pdbx_db_accession 9MFU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9MFU A 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 2 1 9MFU B 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 3 1 9MFU D 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 4 1 9MFU E 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 5 1 9MFU F 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 6 1 9MFU G 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 7 1 9MFU X 1 ? 9 ? 9MFU 1 ? 9 ? 1 9 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 98-meric 98 2 'helical asymmetric unit' ? heptameric 7 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-14)' A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.99110000 -0.13312100 0.00000000 0.00000 0.13312100 0.99110000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -15.12000 3 'helical symmetry operation' ? ? 0.99604100 -0.08889430 0.00000000 0.00000 0.08889430 0.99604100 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -10.08000 4 'helical symmetry operation' ? ? 0.99901000 -0.04449120 0.00000000 0.00000 0.04449120 0.99901000 0.00000000 0.00000 -0.00000000 0.00000000 1.00000000 -5.04000 5 'helical symmetry operation' ? ? 0.99901000 0.04449120 0.00000000 0.00000 -0.04449120 0.99901000 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 5.04000 6 'helical symmetry operation' ? ? 0.99604100 0.08889430 0.00000000 0.00000 -0.08889430 0.99604100 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 10.08000 7 'helical symmetry operation' ? ? 0.99110000 0.13312100 0.00000000 0.00000 -0.13312100 0.99110000 0.00000000 0.00000 0.00000000 -0.00000000 1.00000000 15.12000 8 'helical symmetry operation' ? ? -0.99110000 0.13312100 0.00000000 0.00000 -0.13312100 -0.99110000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.12000 9 'helical symmetry operation' ? ? -0.99604100 0.08889430 0.00000000 0.00000 -0.08889430 -0.99604100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -10.08000 10 'helical symmetry operation' ? ? -0.99901000 0.04449120 0.00000000 0.00000 -0.04449120 -0.99901000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.04000 11 'helical symmetry operation' ? ? -1.00000000 -0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 12 'helical symmetry operation' ? ? -0.99901000 -0.04449120 0.00000000 0.00000 0.04449120 -0.99901000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.04000 13 'helical symmetry operation' ? ? -0.99604100 -0.08889430 0.00000000 0.00000 0.08889430 -0.99604100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 10.08000 14 'helical symmetry operation' ? ? -0.99110000 -0.13312100 0.00000000 0.00000 0.13312100 -0.99110000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.12000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A I7L 1 C02 ? ? ? 1_555 A PHE 2 N ? ? A I7L 1 A PHE 2 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale2 covale both ? B I7L 1 C02 ? ? ? 1_555 B PHE 2 N ? ? B I7L 1 B PHE 2 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale3 covale both ? C I7L 1 C02 ? ? ? 1_555 C PHE 2 N ? ? D I7L 1 D PHE 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale4 covale both ? D I7L 1 C02 ? ? ? 1_555 D PHE 2 N ? ? E I7L 1 E PHE 2 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale5 covale both ? E I7L 1 C02 ? ? ? 1_555 E PHE 2 N ? ? F I7L 1 F PHE 2 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale6 covale both ? F I7L 1 C02 ? ? ? 1_555 F PHE 2 N ? ? G I7L 1 G PHE 2 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale7 covale both ? G I7L 1 C02 ? ? ? 1_555 G PHE 2 N ? ? X I7L 1 X PHE 2 1_555 ? ? ? ? ? ? ? 1.410 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 I7L A 1 ? . . . . I7L A 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 2 I7L B 1 ? . . . . I7L B 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 3 I7L C 1 ? . . . . I7L D 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 4 I7L D 1 ? . . . . I7L E 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 5 I7L E 1 ? . . . . I7L F 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 6 I7L F 1 ? . . . . I7L G 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 7 I7L G 1 ? . . . . I7L X 1 ? 1_555 . . . . . . . ? 1 I7L None 'Non-standard residue' 8 I7L A 1 ? PHE A 2 ? I7L A 1 ? 1_555 PHE A 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 9 I7L B 1 ? PHE B 2 ? I7L B 1 ? 1_555 PHE B 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 10 I7L C 1 ? PHE C 2 ? I7L D 1 ? 1_555 PHE D 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 11 I7L D 1 ? PHE D 2 ? I7L E 1 ? 1_555 PHE E 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 12 I7L E 1 ? PHE E 2 ? I7L F 1 ? 1_555 PHE F 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 13 I7L F 1 ? PHE F 2 ? I7L G 1 ? 1_555 PHE G 2 ? 1_555 C02 N . . . None 'Non-standard linkage' 14 I7L G 1 ? PHE G 2 ? I7L X 1 ? 1_555 PHE X 2 ? 1_555 C02 N . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 9MFU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE1 A TYR 7 ? ? CZ A TYR 7 ? ? 1.285 1.381 -0.096 0.013 N 2 1 CE1 E TYR 7 ? ? CZ E TYR 7 ? ? 1.270 1.381 -0.111 0.013 N 3 1 CE1 G TYR 7 ? ? CZ G TYR 7 ? ? 1.301 1.381 -0.080 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C E GLY 4 ? ? N E PRO 5 ? ? CA E PRO 5 ? ? 132.13 119.30 12.83 1.50 Y 2 1 C G GLY 4 ? ? N G PRO 5 ? ? CA G PRO 5 ? ? 131.77 119.30 12.47 1.50 Y 3 1 C X GLY 4 ? ? N X PRO 5 ? ? CA X PRO 5 ? ? 135.16 119.30 15.86 1.50 Y 4 1 C X GLY 4 ? ? N X PRO 5 ? ? CD X PRO 5 ? ? 115.71 128.40 -12.69 2.10 Y # _pdbx_helical_symmetry.entry_id 9MFU _pdbx_helical_symmetry.number_of_operations 7 _pdbx_helical_symmetry.rotation_per_n_subunits -2.55 _pdbx_helical_symmetry.rise_per_n_subunits 5.04 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9MFU _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9MFU _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.87 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 858964 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source SYNTHETIC _em_entity_assembly.type COMPLEX _em_entity_assembly.name '(I7L)FFGPQYQP' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9MFU _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9MFU _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9MFU _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 9 ? A PRO 9 2 1 Y 1 B GLN 6 ? B GLN 6 3 1 Y 1 B TYR 7 ? B TYR 7 4 1 Y 1 B GLN 8 ? B GLN 8 5 1 Y 1 B PRO 9 ? B PRO 9 6 1 Y 1 D PRO 9 ? C PRO 9 7 1 Y 1 E PRO 9 ? D PRO 9 8 1 Y 1 F GLN 8 ? E GLN 8 9 1 Y 1 F PRO 9 ? E PRO 9 10 1 Y 1 G PRO 9 ? F PRO 9 11 1 Y 1 X GLN 8 ? G GLN 8 12 1 Y 1 X PRO 9 ? G PRO 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 GLY N N N N 21 GLY CA C N N 22 GLY C C N N 23 GLY O O N N 24 GLY OXT O N N 25 GLY H H N N 26 GLY H2 H N N 27 GLY HA2 H N N 28 GLY HA3 H N N 29 GLY HXT H N N 30 I7L C10 C Y N 31 I7L C13 C Y N 32 I7L O01 O N N 33 I7L C02 C N N 34 I7L O03 O N N 35 I7L C04 C N N 36 I7L C05 C Y N 37 I7L C06 C Y N 38 I7L C07 C Y N 39 I7L C08 C Y N 40 I7L C09 C Y N 41 I7L C11 C Y N 42 I7L C12 C Y N 43 I7L C14 C Y N 44 I7L H1 H N N 45 I7L H2 H N N 46 I7L H3 H N N 47 I7L H4 H N N 48 I7L H5 H N N 49 I7L H6 H N N 50 I7L H7 H N N 51 I7L H8 H N N 52 I7L H9 H N N 53 I7L H10 H N N 54 PHE N N N N 55 PHE CA C N S 56 PHE C C N N 57 PHE O O N N 58 PHE CB C N N 59 PHE CG C Y N 60 PHE CD1 C Y N 61 PHE CD2 C Y N 62 PHE CE1 C Y N 63 PHE CE2 C Y N 64 PHE CZ C Y N 65 PHE OXT O N N 66 PHE H H N N 67 PHE H2 H N N 68 PHE HA H N N 69 PHE HB2 H N N 70 PHE HB3 H N N 71 PHE HD1 H N N 72 PHE HD2 H N N 73 PHE HE1 H N N 74 PHE HE2 H N N 75 PHE HZ H N N 76 PHE HXT H N N 77 PRO N N N N 78 PRO CA C N S 79 PRO C C N N 80 PRO O O N N 81 PRO CB C N N 82 PRO CG C N N 83 PRO CD C N N 84 PRO OXT O N N 85 PRO H H N N 86 PRO HA H N N 87 PRO HB2 H N N 88 PRO HB3 H N N 89 PRO HG2 H N N 90 PRO HG3 H N N 91 PRO HD2 H N N 92 PRO HD3 H N N 93 PRO HXT H N N 94 TYR N N N N 95 TYR CA C N S 96 TYR C C N N 97 TYR O O N N 98 TYR CB C N N 99 TYR CG C Y N 100 TYR CD1 C Y N 101 TYR CD2 C Y N 102 TYR CE1 C Y N 103 TYR CE2 C Y N 104 TYR CZ C Y N 105 TYR OH O N N 106 TYR OXT O N N 107 TYR H H N N 108 TYR H2 H N N 109 TYR HA H N N 110 TYR HB2 H N N 111 TYR HB3 H N N 112 TYR HD1 H N N 113 TYR HD2 H N N 114 TYR HE1 H N N 115 TYR HE2 H N N 116 TYR HH H N N 117 TYR HXT H N N 118 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 GLY N CA sing N N 20 GLY N H sing N N 21 GLY N H2 sing N N 22 GLY CA C sing N N 23 GLY CA HA2 sing N N 24 GLY CA HA3 sing N N 25 GLY C O doub N N 26 GLY C OXT sing N N 27 GLY OXT HXT sing N N 28 I7L C10 C09 doub Y N 29 I7L C10 C11 sing Y N 30 I7L C09 C08 sing Y N 31 I7L C11 C12 doub Y N 32 I7L C08 C07 doub Y N 33 I7L C08 C13 sing Y N 34 I7L C07 C06 sing Y N 35 I7L C12 C13 sing Y N 36 I7L C13 C14 doub Y N 37 I7L C06 C05 doub Y N 38 I7L C14 C05 sing Y N 39 I7L C05 C04 sing N N 40 I7L O01 C02 doub N N 41 I7L C02 C04 sing N N 42 I7L C02 O03 sing N N 43 I7L C10 H1 sing N N 44 I7L O03 H2 sing N N 45 I7L C04 H3 sing N N 46 I7L C04 H4 sing N N 47 I7L C06 H5 sing N N 48 I7L C07 H6 sing N N 49 I7L C09 H7 sing N N 50 I7L C11 H8 sing N N 51 I7L C12 H9 sing N N 52 I7L C14 H10 sing N N 53 PHE N CA sing N N 54 PHE N H sing N N 55 PHE N H2 sing N N 56 PHE CA C sing N N 57 PHE CA CB sing N N 58 PHE CA HA sing N N 59 PHE C O doub N N 60 PHE C OXT sing N N 61 PHE CB CG sing N N 62 PHE CB HB2 sing N N 63 PHE CB HB3 sing N N 64 PHE CG CD1 doub Y N 65 PHE CG CD2 sing Y N 66 PHE CD1 CE1 sing Y N 67 PHE CD1 HD1 sing N N 68 PHE CD2 CE2 doub Y N 69 PHE CD2 HD2 sing N N 70 PHE CE1 CZ doub Y N 71 PHE CE1 HE1 sing N N 72 PHE CE2 CZ sing Y N 73 PHE CE2 HE2 sing N N 74 PHE CZ HZ sing N N 75 PHE OXT HXT sing N N 76 PRO N CA sing N N 77 PRO N CD sing N N 78 PRO N H sing N N 79 PRO CA C sing N N 80 PRO CA CB sing N N 81 PRO CA HA sing N N 82 PRO C O doub N N 83 PRO C OXT sing N N 84 PRO CB CG sing N N 85 PRO CB HB2 sing N N 86 PRO CB HB3 sing N N 87 PRO CG CD sing N N 88 PRO CG HG2 sing N N 89 PRO CG HG3 sing N N 90 PRO CD HD2 sing N N 91 PRO CD HD3 sing N N 92 PRO OXT HXT sing N N 93 TYR N CA sing N N 94 TYR N H sing N N 95 TYR N H2 sing N N 96 TYR CA C sing N N 97 TYR CA CB sing N N 98 TYR CA HA sing N N 99 TYR C O doub N N 100 TYR C OXT sing N N 101 TYR CB CG sing N N 102 TYR CB HB2 sing N N 103 TYR CB HB3 sing N N 104 TYR CG CD1 doub Y N 105 TYR CG CD2 sing Y N 106 TYR CD1 CE1 sing Y N 107 TYR CD1 HD1 sing N N 108 TYR CD2 CE2 doub Y N 109 TYR CD2 HD2 sing N N 110 TYR CE1 CZ doub Y N 111 TYR CE1 HE1 sing N N 112 TYR CE2 CZ sing Y N 113 TYR CE2 HE2 sing N N 114 TYR CZ OH sing N N 115 TYR OH HH sing N N 116 TYR OXT HXT sing N N 117 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-10 _em_admin.deposition_site RCSB _em_admin.entry_id 9MFU _em_admin.last_update 2025-07-09 _em_admin.map_release_date 2025-05-07 _em_admin.title 'Cryo-EM of helical fibers formed by (NAP)FFGPQYQP' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -2.55 _em_helical_entity.axial_rise_per_subunit 5.04 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.18.2_3874 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM138756 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 2 # _atom_sites.entry_id 9MFU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #