data_9MIL # _entry.id 9MIL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MIL pdb_00009mil 10.2210/pdb9mil/pdb WWPDB D_1000291050 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-06-04 ? 2 'Structure model' 1 1 2025-06-18 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MIL _pdbx_database_status.recvd_initial_deposition_date 2024-12-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email tdo5@utk.edu _pdbx_contact_author.name_first Thanh _pdbx_contact_author.name_last Do _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1978-4365 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Hirschbeck, S.S.' 2 0009-0000-0201-6960 'Eisenberg, D.S.' 3 0000-0003-2432-5419 'Do, T.' 4 0000-0002-1978-4365 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 147 _citation.language ? _citation.page_first 18594 _citation.page_last 18605 _citation.title 'Amyloid Oligomers: Expediting Crystal Growth and Revisiting the Corkscrew Structures.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.5c00656 _citation.pdbx_database_id_PubMed 40398050 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hirschbeck, S.S.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Lindberg, E.T.' 3 ? primary 'Limbach, M.N.' 4 ? primary 'Jang, J.H.' 5 ? primary 'Lazar Cantrell, K.L.' 6 ? primary 'Eisenberg, D.S.' 7 ? primary 'Do, T.D.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Superoxide dismutase [Cu-Zn]' 1386.704 10 1.15.1.1 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Superoxide dismutase 1,hSod1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code PVKVWGSIKRLT _entity_poly.pdbx_seq_one_letter_code_can PVKVWGSIKRLT _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'TETRAETHYLENE GLYCOL' PG4 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 LYS n 1 4 VAL n 1 5 TRP n 1 6 GLY n 1 7 SER n 1 8 ILE n 1 9 LYS n 1 10 ARG n 1 11 LEU n 1 12 THR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 28 28 PRO PRO A . n A 1 2 VAL 2 29 29 VAL VAL A . n A 1 3 LYS 3 30 30 LYS LYS A . n A 1 4 VAL 4 31 31 VAL VAL A . n A 1 5 TRP 5 32 32 TRP TRP A . n A 1 6 GLY 6 33 33 GLY GLY A . n A 1 7 SER 7 34 34 SER SER A . n A 1 8 ILE 8 35 35 ILE ILE A . n A 1 9 LYS 9 36 36 LYS LYS A . n A 1 10 ARG 10 37 37 ARG ARG A . n A 1 11 LEU 11 38 38 LEU LEU A . n A 1 12 THR 12 39 39 THR THR A . n B 1 1 PRO 1 28 28 PRO PRO B . n B 1 2 VAL 2 29 29 VAL VAL B . n B 1 3 LYS 3 30 30 LYS LYS B . n B 1 4 VAL 4 31 31 VAL VAL B . n B 1 5 TRP 5 32 32 TRP TRP B . n B 1 6 GLY 6 33 33 GLY GLY B . n B 1 7 SER 7 34 34 SER SER B . n B 1 8 ILE 8 35 35 ILE ILE B . n B 1 9 LYS 9 36 36 LYS LYS B . n B 1 10 ARG 10 37 37 ARG ARG B . n B 1 11 LEU 11 38 38 LEU LEU B . n B 1 12 THR 12 39 39 THR THR B . n C 1 1 PRO 1 28 28 PRO PRO C . n C 1 2 VAL 2 29 29 VAL VAL C . n C 1 3 LYS 3 30 30 LYS LYS C . n C 1 4 VAL 4 31 31 VAL VAL C . n C 1 5 TRP 5 32 32 TRP TRP C . n C 1 6 GLY 6 33 33 GLY GLY C . n C 1 7 SER 7 34 34 SER SER C . n C 1 8 ILE 8 35 35 ILE ILE C . n C 1 9 LYS 9 36 36 LYS LYS C . n C 1 10 ARG 10 37 37 ARG ARG C . n C 1 11 LEU 11 38 38 LEU LEU C . n C 1 12 THR 12 39 39 THR THR C . n D 1 1 PRO 1 28 28 PRO PRO D . n D 1 2 VAL 2 29 29 VAL VAL D . n D 1 3 LYS 3 30 30 LYS LYS D . n D 1 4 VAL 4 31 31 VAL VAL D . n D 1 5 TRP 5 32 32 TRP TRP D . n D 1 6 GLY 6 33 33 GLY GLY D . n D 1 7 SER 7 34 34 SER SER D . n D 1 8 ILE 8 35 35 ILE ILE D . n D 1 9 LYS 9 36 36 LYS LYS D . n D 1 10 ARG 10 37 37 ARG ARG D . n D 1 11 LEU 11 38 38 LEU LEU D . n D 1 12 THR 12 39 39 THR THR D . n E 1 1 PRO 1 28 28 PRO PRO E . n E 1 2 VAL 2 29 29 VAL VAL E . n E 1 3 LYS 3 30 30 LYS LYS E . n E 1 4 VAL 4 31 31 VAL VAL E . n E 1 5 TRP 5 32 32 TRP TRP E . n E 1 6 GLY 6 33 33 GLY GLY E . n E 1 7 SER 7 34 34 SER SER E . n E 1 8 ILE 8 35 35 ILE ILE E . n E 1 9 LYS 9 36 36 LYS LYS E . n E 1 10 ARG 10 37 37 ARG ARG E . n E 1 11 LEU 11 38 38 LEU LEU E . n E 1 12 THR 12 39 39 THR THR E . n F 1 1 PRO 1 28 28 PRO PRO F . n F 1 2 VAL 2 29 29 VAL VAL F . n F 1 3 LYS 3 30 30 LYS LYS F . n F 1 4 VAL 4 31 31 VAL VAL F . n F 1 5 TRP 5 32 32 TRP TRP F . n F 1 6 GLY 6 33 33 GLY GLY F . n F 1 7 SER 7 34 34 SER SER F . n F 1 8 ILE 8 35 35 ILE ILE F . n F 1 9 LYS 9 36 36 LYS LYS F . n F 1 10 ARG 10 37 37 ARG ARG F . n F 1 11 LEU 11 38 38 LEU LEU F . n F 1 12 THR 12 39 39 THR THR F . n G 1 1 PRO 1 28 28 PRO PRO G . n G 1 2 VAL 2 29 29 VAL VAL G . n G 1 3 LYS 3 30 30 LYS LYS G . n G 1 4 VAL 4 31 31 VAL VAL G . n G 1 5 TRP 5 32 32 TRP TRP G . n G 1 6 GLY 6 33 33 GLY GLY G . n G 1 7 SER 7 34 34 SER SER G . n G 1 8 ILE 8 35 35 ILE ILE G . n G 1 9 LYS 9 36 36 LYS LYS G . n G 1 10 ARG 10 37 37 ARG ARG G . n G 1 11 LEU 11 38 38 LEU LEU G . n G 1 12 THR 12 39 39 THR THR G . n H 1 1 PRO 1 28 28 PRO PRO H . n H 1 2 VAL 2 29 29 VAL VAL H . n H 1 3 LYS 3 30 30 LYS LYS H . n H 1 4 VAL 4 31 31 VAL VAL H . n H 1 5 TRP 5 32 32 TRP TRP H . n H 1 6 GLY 6 33 33 GLY GLY H . n H 1 7 SER 7 34 34 SER SER H . n H 1 8 ILE 8 35 35 ILE ILE H . n H 1 9 LYS 9 36 36 LYS LYS H . n H 1 10 ARG 10 37 37 ARG ARG H . n H 1 11 LEU 11 38 38 LEU LEU H . n H 1 12 THR 12 39 39 THR THR H . n I 1 1 PRO 1 28 28 PRO PRO I . n I 1 2 VAL 2 29 29 VAL VAL I . n I 1 3 LYS 3 30 30 LYS LYS I . n I 1 4 VAL 4 31 31 VAL VAL I . n I 1 5 TRP 5 32 32 TRP TRP I . n I 1 6 GLY 6 33 33 GLY GLY I . n I 1 7 SER 7 34 34 SER SER I . n I 1 8 ILE 8 35 35 ILE ILE I . n I 1 9 LYS 9 36 36 LYS LYS I . n I 1 10 ARG 10 37 37 ARG ARG I . n I 1 11 LEU 11 38 38 LEU LEU I . n I 1 12 THR 12 39 39 THR THR I . n J 1 1 PRO 1 28 28 PRO PRO J . n J 1 2 VAL 2 29 29 VAL VAL J . n J 1 3 LYS 3 30 30 LYS LYS J . n J 1 4 VAL 4 31 31 VAL VAL J . n J 1 5 TRP 5 32 32 TRP TRP J . n J 1 6 GLY 6 33 33 GLY GLY J . n J 1 7 SER 7 34 34 SER SER J . n J 1 8 ILE 8 35 35 ILE ILE J . n J 1 9 LYS 9 36 36 LYS LYS J . n J 1 10 ARG 10 37 37 ARG ARG J . n J 1 11 LEU 11 38 38 LEU LEU J . n J 1 12 THR 12 39 39 THR THR J . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 SO4 1 101 102 SO4 SO4 A . L 3 PG4 1 102 101 PG4 PG4 A . M 4 PEG 1 101 101 PEG PEG D . N 2 SO4 1 101 102 SO4 SO4 F . O 2 SO4 1 101 102 SO4 SO4 G . P 2 SO4 1 101 102 SO4 SO4 H . Q 2 SO4 1 101 102 SO4 SO4 I . R 3 PG4 1 101 101 PG4 PG4 J . S 5 HOH 1 101 103 HOH HOH B . T 5 HOH 1 101 106 HOH HOH C . T 5 HOH 2 102 103 HOH HOH C . T 5 HOH 3 103 105 HOH HOH C . T 5 HOH 4 104 104 HOH HOH C . U 5 HOH 1 201 104 HOH HOH D . U 5 HOH 2 202 103 HOH HOH D . V 5 HOH 1 101 103 HOH HOH E . W 5 HOH 1 201 103 HOH HOH F . X 5 HOH 1 201 104 HOH HOH G . Y 5 HOH 1 201 103 HOH HOH I . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21_5207 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20220820 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20220820 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9MIL _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.890 _cell.length_a_esd ? _cell.length_b 59.890 _cell.length_b_esd ? _cell.length_c 93.760 _cell.length_c_esd ? _cell.volume 291243.913 _cell.volume_esd ? _cell.Z_PDB 60 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MIL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65 _exptl_crystal.description 'thick hexagonal plate' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.0 M Ammonium sulfate, 0.1 M BIS-TRIS pH 5.5, 1% w/v Polyethylene glycol 3,350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-08-06 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979340 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979340 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 76.76 _reflns.entry_id 9MIL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 19.6 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7087 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.03 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.129 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.50 2.56 ? ? ? ? ? ? 493 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? ? 1 1 0.35 ? ? ? ? 1.835 ? ? ? ? ? ? ? ? ? 2.56 2.63 ? ? ? ? ? ? 500 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? ? 2 1 0.446 ? ? ? ? 1.737 ? ? ? ? ? ? ? ? ? 2.63 2.71 ? ? ? ? ? ? 504 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? ? 3 1 0.587 ? ? ? ? 1.372 ? ? ? ? ? ? ? ? ? 2.71 2.79 ? ? ? ? ? ? 462 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.077 ? ? 4 1 0.711 ? ? ? ? 1.012 ? ? ? ? ? ? ? ? ? 2.79 2.88 ? ? ? ? ? ? 473 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.855 ? ? 5 1 0.762 ? ? ? ? 0.802 ? ? ? ? ? ? ? ? ? 2.88 2.98 ? ? ? ? ? ? 452 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.593 ? ? 6 1 0.898 ? ? ? ? 0.556 ? ? ? ? ? ? ? ? ? 2.98 3.1 ? ? ? ? ? ? 417 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.384 ? ? 7 1 0.939 ? ? ? ? 0.36 ? ? ? ? ? ? ? ? ? 3.10 3.22 ? ? ? ? ? ? 427 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.286 ? ? 8 1 0.965 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? ? 3.22 3.37 ? ? ? ? ? ? 400 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.254 ? ? 9 1 0.98 ? ? ? ? 0.236 ? ? ? ? ? ? ? ? ? 3.37 3.53 ? ? ? ? ? ? 384 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.207 ? ? 10 1 0.981 ? ? ? ? 0.191 ? ? ? ? ? ? ? ? ? 3.53 3.72 ? ? ? ? ? ? 360 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.197 ? ? 11 1 0.981 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? ? 3.72 3.95 ? ? ? ? ? ? 340 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.139 ? ? 12 1 0.99 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? ? 3.95 4.22 ? ? ? ? ? ? 336 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.115 ? ? 13 1 0.99 ? ? ? ? 0.107 ? ? ? ? ? ? ? ? ? 4.22 4.56 ? ? ? ? ? ? 308 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.1 ? ? 14 1 0.994 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? ? 4.56 4.99 ? ? ? ? ? ? 295 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.094 ? ? 15 1 0.995 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? ? 4.99 5.58 ? ? ? ? ? ? 256 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.092 ? ? 16 1 0.994 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? ? 5.58 6.45 ? ? ? ? ? ? 232 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.097 ? ? 17 1 0.991 ? ? ? ? 0.09 ? ? ? ? ? ? ? ? ? 6.45 7.9 ? ? ? ? ? ? 207 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.086 ? ? 18 1 0.991 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? ? 7.90 11.17 ? ? ? ? ? ? 161 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.069 ? ? 19 1 0.999 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? ? 11.17 19.6 ? ? ? ? ? ? 80 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.064 ? ? 20 1 0.996 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 87.64 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MIL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 19.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7085 _refine.ls_number_reflns_R_free 709 _refine.ls_number_reflns_R_work 6376 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.76 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2231 _refine.ls_R_factor_R_free 0.2628 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2187 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.5062 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4045 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 19.60 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1049 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 980 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0042 ? 1050 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.6817 ? 1397 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0620 ? 160 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0044 ? 140 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.7031 ? 404 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.ncs_model_details 1 'X-RAY DIFFRACTION' d_2 ens_1 1.16013385867 ? ? ? 'Torsion NCS' A A ? ? ? ? 2 'X-RAY DIFFRACTION' d_3 ens_1 0.904171500083 ? ? ? 'Torsion NCS' A A ? ? ? ? 3 'X-RAY DIFFRACTION' d_4 ens_1 1.21670148224 ? ? ? 'Torsion NCS' A A ? ? ? ? 4 'X-RAY DIFFRACTION' d_5 ens_1 1.54422206447 ? ? ? 'Torsion NCS' A A ? ? ? ? 5 'X-RAY DIFFRACTION' d_2 ens_2 1.04831399398 ? ? ? 'Torsion NCS' B B ? ? ? ? 6 'X-RAY DIFFRACTION' d_3 ens_2 1.20386726995 ? ? ? 'Torsion NCS' B B ? ? ? ? 7 'X-RAY DIFFRACTION' d_4 ens_2 1.38598078665 ? ? ? 'Torsion NCS' B B ? ? ? ? 8 'X-RAY DIFFRACTION' d_5 ens_2 1.75080390407 ? ? ? 'Torsion NCS' B B ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.50 2.69 . . 137 1236 99.56 . . . . 0.3498 . . . . . . . . . . . 0.3976 'X-RAY DIFFRACTION' 2.69 2.96 . . 138 1241 100.00 . . . . 0.3262 . . . . . . . . . . . 0.3959 'X-RAY DIFFRACTION' 2.96 3.39 . . 142 1274 100.00 . . . . 0.2247 . . . . . . . . . . . 0.2893 'X-RAY DIFFRACTION' 3.39 4.25 . . 141 1274 99.37 . . . . 0.2084 . . . . . . . . . . . 0.2836 'X-RAY DIFFRACTION' 4.26 19.60 . . 151 1351 99.87 . . . . 0.1985 . . . . . . . . . . . 0.2192 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 0.81810023081 0.0172297057759 -0.574817492416 -0.211535401485 0.938488016557 -0.272934088559 0.534756754297 0.344881689885 0.771421955687 11.9079658544 14.4861411219 -8.86924356049 ? 2 given 0.18421863994 -0.300985095307 -0.935666321453 -0.51300705287 0.782560026869 -0.35273725073 0.838383716686 0.544984198624 -0.01024533288 31.0582253036 28.0761634257 -3.32834022614 ? 3 given -0.385663912587 -0.644109864804 -0.660595056437 -0.746914651464 0.638287293338 -0.186300388062 0.541647348333 0.421558789761 -0.727259470078 38.1763628949 36.4294081852 15.4234880902 ? 4 given -0.489433831201 -0.832911497981 -0.258288523567 -0.852267911371 0.519588104124 -0.0605607901234 0.184645422697 0.190490520981 -0.964167739189 32.3686854323 43.0082299991 27.087904641 ? 5 given 0.750158386826 -0.0561708089204 -0.658868146825 -0.173285062185 0.944866554611 -0.277847946188 0.638149419728 0.322601974889 0.699066008256 14.4299182634 13.6103507292 -11.0656849605 ? 6 given 0.182326823214 -0.271806979073 -0.944922163812 -0.477586188799 0.815564888961 -0.326749665894 0.859458179206 0.510857003496 0.0188880961043 32.2241376447 27.3171303541 -5.36789775379 ? 7 given -0.381268528803 -0.649775223686 -0.657591413895 -0.720130738009 0.654790774724 -0.229479326978 0.579694772375 0.386058544809 -0.717574226726 37.5533499336 36.7936512662 13.2953396931 ? 8 given -0.555174036488 -0.796683539474 -0.238908198146 -0.806854308395 0.585601092995 -0.0778298458648 0.20191065904 0.149554999297 -0.967918068822 34.4378159624 44.162027841 25.1793061136 ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and resid 28 through 36) ; ens_1 d_2 ;(chain "C" and resid 28 through 36) ; ens_1 d_3 ;(chain "E" and resid 28 through 36) ; ens_1 d_4 ;(chain "G" and resid 28 through 36) ; ens_1 d_5 ;(chain "I" and resid 28 through 36) ; ens_2 d_1 ;(chain "B" and resid 28 through 36) ; ens_2 d_2 ;(chain "D" and resid 28 through 36) ; ens_2 d_3 ;(chain "F" and resid 28 through 36) ; ens_2 d_4 ;(chain "H" and resid 28 through 36) ; ens_2 d_5 ;(chain "J" and resid 28 through 36) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A PRO 1 . A LYS 9 . A PRO 28 A LYS 36 ? ? ens_1 d_2 1 C PRO 1 . C LYS 9 . C PRO 28 C LYS 36 ? ? ens_1 d_3 1 E PRO 1 . E LYS 9 . E PRO 28 E LYS 36 ? ? ens_1 d_4 1 G PRO 1 . G LYS 9 . G PRO 28 G LYS 36 ? ? ens_1 d_5 1 I PRO 1 . I LYS 9 . I PRO 28 I LYS 36 ? ? ens_2 d_1 1 B PRO 1 . B LYS 9 . B PRO 28 B LYS 36 ? ? ens_2 d_2 1 D PRO 1 . D LYS 9 . D PRO 28 D LYS 36 ? ? ens_2 d_3 1 F PRO 1 . F LYS 9 . F PRO 28 F LYS 36 ? ? ens_2 d_4 1 H PRO 1 . H LYS 9 . H PRO 28 H LYS 36 ? ? ens_2 d_5 1 J PRO 1 . J LYS 9 . J PRO 28 J LYS 36 ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details ens_1 ? ens_2 ? # loop_ _struct_ncs_ens_gen.ens_id _struct_ncs_ens_gen.dom_id_1 _struct_ncs_ens_gen.dom_id_2 _struct_ncs_ens_gen.oper_id ens_1 d_2 d_1 1 ens_1 d_3 d_1 2 ens_1 d_4 d_1 3 ens_1 d_5 d_1 4 ens_2 d_2 d_1 5 ens_2 d_3 d_1 6 ens_2 d_4 d_1 7 ens_2 d_5 d_1 8 # _struct.entry_id 9MIL _struct.title 'Superoxide dismutase residues 28-39 with G37R mutation' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MIL _struct_keywords.text 'Corkescrew, amyloid oligomer, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 3 ? S N N 5 ? T N N 5 ? U N N 5 ? V N N 5 ? W N N 5 ? X N N 5 ? Y N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_HUMAN _struct_ref.pdbx_db_accession P00441 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PVKVWGSIKGLT _struct_ref.pdbx_align_begin 29 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9MIL A 1 ? 12 ? P00441 29 ? 40 ? 28 39 2 1 9MIL B 1 ? 12 ? P00441 29 ? 40 ? 28 39 3 1 9MIL C 1 ? 12 ? P00441 29 ? 40 ? 28 39 4 1 9MIL D 1 ? 12 ? P00441 29 ? 40 ? 28 39 5 1 9MIL E 1 ? 12 ? P00441 29 ? 40 ? 28 39 6 1 9MIL F 1 ? 12 ? P00441 29 ? 40 ? 28 39 7 1 9MIL G 1 ? 12 ? P00441 29 ? 40 ? 28 39 8 1 9MIL H 1 ? 12 ? P00441 29 ? 40 ? 28 39 9 1 9MIL I 1 ? 12 ? P00441 29 ? 40 ? 28 39 10 1 9MIL J 1 ? 12 ? P00441 29 ? 40 ? 28 39 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9MIL ARG A 10 ? UNP P00441 GLY 38 variant 37 1 2 9MIL ARG B 10 ? UNP P00441 GLY 38 variant 37 2 3 9MIL ARG C 10 ? UNP P00441 GLY 38 variant 37 3 4 9MIL ARG D 10 ? UNP P00441 GLY 38 variant 37 4 5 9MIL ARG E 10 ? UNP P00441 GLY 38 variant 37 5 6 9MIL ARG F 10 ? UNP P00441 GLY 38 variant 37 6 7 9MIL ARG G 10 ? UNP P00441 GLY 38 variant 37 7 8 9MIL ARG H 10 ? UNP P00441 GLY 38 variant 37 8 9 9MIL ARG I 10 ? UNP P00441 GLY 38 variant 37 9 10 9MIL ARG J 10 ? UNP P00441 GLY 38 variant 37 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? ILE A 8 ? VAL A 29 ILE A 35 AA1 2 VAL B 2 ? ILE B 8 ? VAL B 29 ILE B 35 AA1 3 VAL C 2 ? ILE C 8 ? VAL C 29 ILE C 35 AA1 4 VAL D 2 ? ILE D 8 ? VAL D 29 ILE D 35 AA1 5 VAL E 2 ? ILE E 8 ? VAL E 29 ILE E 35 AA1 6 VAL F 2 ? ILE F 8 ? VAL F 29 ILE F 35 AA1 7 VAL G 2 ? ILE G 8 ? VAL G 29 ILE G 35 AA1 8 VAL H 2 ? ILE H 8 ? VAL H 29 ILE H 35 AA1 9 VAL I 2 ? ILE I 8 ? VAL I 29 ILE I 35 AA1 10 VAL J 2 ? SER J 7 ? VAL J 29 SER J 34 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL A 31 O GLY B 6 ? O GLY B 33 AA1 2 3 N TRP B 5 ? N TRP B 32 O LYS C 3 ? O LYS C 30 AA1 3 4 N VAL C 4 ? N VAL C 31 O GLY D 6 ? O GLY D 33 AA1 4 5 N TRP D 5 ? N TRP D 32 O LYS E 3 ? O LYS E 30 AA1 5 6 N VAL E 4 ? N VAL E 31 O GLY F 6 ? O GLY F 33 AA1 6 7 N LYS F 3 ? N LYS F 30 O TRP G 5 ? O TRP G 32 AA1 7 8 N ILE G 8 ? N ILE G 35 O VAL H 2 ? O VAL H 29 AA1 8 9 N TRP H 5 ? N TRP H 32 O LYS I 3 ? O LYS I 30 AA1 9 10 N VAL I 4 ? N VAL I 31 O GLY J 6 ? O GLY J 33 # _pdbx_entry_details.entry_id 9MIL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 38 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -71.05 _pdbx_validate_torsion.psi -71.57 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 GLY N N N N 28 GLY CA C N N 29 GLY C C N N 30 GLY O O N N 31 GLY OXT O N N 32 GLY H H N N 33 GLY H2 H N N 34 GLY HA2 H N N 35 GLY HA3 H N N 36 GLY HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 ILE N N N N 41 ILE CA C N S 42 ILE C C N N 43 ILE O O N N 44 ILE CB C N S 45 ILE CG1 C N N 46 ILE CG2 C N N 47 ILE CD1 C N N 48 ILE OXT O N N 49 ILE H H N N 50 ILE H2 H N N 51 ILE HA H N N 52 ILE HB H N N 53 ILE HG12 H N N 54 ILE HG13 H N N 55 ILE HG21 H N N 56 ILE HG22 H N N 57 ILE HG23 H N N 58 ILE HD11 H N N 59 ILE HD12 H N N 60 ILE HD13 H N N 61 ILE HXT H N N 62 LEU N N N N 63 LEU CA C N S 64 LEU C C N N 65 LEU O O N N 66 LEU CB C N N 67 LEU CG C N N 68 LEU CD1 C N N 69 LEU CD2 C N N 70 LEU OXT O N N 71 LEU H H N N 72 LEU H2 H N N 73 LEU HA H N N 74 LEU HB2 H N N 75 LEU HB3 H N N 76 LEU HG H N N 77 LEU HD11 H N N 78 LEU HD12 H N N 79 LEU HD13 H N N 80 LEU HD21 H N N 81 LEU HD22 H N N 82 LEU HD23 H N N 83 LEU HXT H N N 84 LYS N N N N 85 LYS CA C N S 86 LYS C C N N 87 LYS O O N N 88 LYS CB C N N 89 LYS CG C N N 90 LYS CD C N N 91 LYS CE C N N 92 LYS NZ N N N 93 LYS OXT O N N 94 LYS H H N N 95 LYS H2 H N N 96 LYS HA H N N 97 LYS HB2 H N N 98 LYS HB3 H N N 99 LYS HG2 H N N 100 LYS HG3 H N N 101 LYS HD2 H N N 102 LYS HD3 H N N 103 LYS HE2 H N N 104 LYS HE3 H N N 105 LYS HZ1 H N N 106 LYS HZ2 H N N 107 LYS HZ3 H N N 108 LYS HXT H N N 109 PEG C1 C N N 110 PEG O1 O N N 111 PEG C2 C N N 112 PEG O2 O N N 113 PEG C3 C N N 114 PEG C4 C N N 115 PEG O4 O N N 116 PEG H11 H N N 117 PEG H12 H N N 118 PEG HO1 H N N 119 PEG H21 H N N 120 PEG H22 H N N 121 PEG H31 H N N 122 PEG H32 H N N 123 PEG H41 H N N 124 PEG H42 H N N 125 PEG HO4 H N N 126 PG4 O1 O N N 127 PG4 C1 C N N 128 PG4 C2 C N N 129 PG4 O2 O N N 130 PG4 C3 C N N 131 PG4 C4 C N N 132 PG4 O3 O N N 133 PG4 C5 C N N 134 PG4 C6 C N N 135 PG4 O4 O N N 136 PG4 C7 C N N 137 PG4 C8 C N N 138 PG4 O5 O N N 139 PG4 HO1 H N N 140 PG4 H11 H N N 141 PG4 H12 H N N 142 PG4 H21 H N N 143 PG4 H22 H N N 144 PG4 H31 H N N 145 PG4 H32 H N N 146 PG4 H41 H N N 147 PG4 H42 H N N 148 PG4 H51 H N N 149 PG4 H52 H N N 150 PG4 H61 H N N 151 PG4 H62 H N N 152 PG4 H71 H N N 153 PG4 H72 H N N 154 PG4 H81 H N N 155 PG4 H82 H N N 156 PG4 HO5 H N N 157 PRO N N N N 158 PRO CA C N S 159 PRO C C N N 160 PRO O O N N 161 PRO CB C N N 162 PRO CG C N N 163 PRO CD C N N 164 PRO OXT O N N 165 PRO H H N N 166 PRO HA H N N 167 PRO HB2 H N N 168 PRO HB3 H N N 169 PRO HG2 H N N 170 PRO HG3 H N N 171 PRO HD2 H N N 172 PRO HD3 H N N 173 PRO HXT H N N 174 SER N N N N 175 SER CA C N S 176 SER C C N N 177 SER O O N N 178 SER CB C N N 179 SER OG O N N 180 SER OXT O N N 181 SER H H N N 182 SER H2 H N N 183 SER HA H N N 184 SER HB2 H N N 185 SER HB3 H N N 186 SER HG H N N 187 SER HXT H N N 188 SO4 S S N N 189 SO4 O1 O N N 190 SO4 O2 O N N 191 SO4 O3 O N N 192 SO4 O4 O N N 193 THR N N N N 194 THR CA C N S 195 THR C C N N 196 THR O O N N 197 THR CB C N R 198 THR OG1 O N N 199 THR CG2 C N N 200 THR OXT O N N 201 THR H H N N 202 THR H2 H N N 203 THR HA H N N 204 THR HB H N N 205 THR HG1 H N N 206 THR HG21 H N N 207 THR HG22 H N N 208 THR HG23 H N N 209 THR HXT H N N 210 TRP N N N N 211 TRP CA C N S 212 TRP C C N N 213 TRP O O N N 214 TRP CB C N N 215 TRP CG C Y N 216 TRP CD1 C Y N 217 TRP CD2 C Y N 218 TRP NE1 N Y N 219 TRP CE2 C Y N 220 TRP CE3 C Y N 221 TRP CZ2 C Y N 222 TRP CZ3 C Y N 223 TRP CH2 C Y N 224 TRP OXT O N N 225 TRP H H N N 226 TRP H2 H N N 227 TRP HA H N N 228 TRP HB2 H N N 229 TRP HB3 H N N 230 TRP HD1 H N N 231 TRP HE1 H N N 232 TRP HE3 H N N 233 TRP HZ2 H N N 234 TRP HZ3 H N N 235 TRP HH2 H N N 236 TRP HXT H N N 237 VAL N N N N 238 VAL CA C N S 239 VAL C C N N 240 VAL O O N N 241 VAL CB C N N 242 VAL CG1 C N N 243 VAL CG2 C N N 244 VAL OXT O N N 245 VAL H H N N 246 VAL H2 H N N 247 VAL HA H N N 248 VAL HB H N N 249 VAL HG11 H N N 250 VAL HG12 H N N 251 VAL HG13 H N N 252 VAL HG21 H N N 253 VAL HG22 H N N 254 VAL HG23 H N N 255 VAL HXT H N N 256 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 GLY N CA sing N N 27 GLY N H sing N N 28 GLY N H2 sing N N 29 GLY CA C sing N N 30 GLY CA HA2 sing N N 31 GLY CA HA3 sing N N 32 GLY C O doub N N 33 GLY C OXT sing N N 34 GLY OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 ILE N CA sing N N 38 ILE N H sing N N 39 ILE N H2 sing N N 40 ILE CA C sing N N 41 ILE CA CB sing N N 42 ILE CA HA sing N N 43 ILE C O doub N N 44 ILE C OXT sing N N 45 ILE CB CG1 sing N N 46 ILE CB CG2 sing N N 47 ILE CB HB sing N N 48 ILE CG1 CD1 sing N N 49 ILE CG1 HG12 sing N N 50 ILE CG1 HG13 sing N N 51 ILE CG2 HG21 sing N N 52 ILE CG2 HG22 sing N N 53 ILE CG2 HG23 sing N N 54 ILE CD1 HD11 sing N N 55 ILE CD1 HD12 sing N N 56 ILE CD1 HD13 sing N N 57 ILE OXT HXT sing N N 58 LEU N CA sing N N 59 LEU N H sing N N 60 LEU N H2 sing N N 61 LEU CA C sing N N 62 LEU CA CB sing N N 63 LEU CA HA sing N N 64 LEU C O doub N N 65 LEU C OXT sing N N 66 LEU CB CG sing N N 67 LEU CB HB2 sing N N 68 LEU CB HB3 sing N N 69 LEU CG CD1 sing N N 70 LEU CG CD2 sing N N 71 LEU CG HG sing N N 72 LEU CD1 HD11 sing N N 73 LEU CD1 HD12 sing N N 74 LEU CD1 HD13 sing N N 75 LEU CD2 HD21 sing N N 76 LEU CD2 HD22 sing N N 77 LEU CD2 HD23 sing N N 78 LEU OXT HXT sing N N 79 LYS N CA sing N N 80 LYS N H sing N N 81 LYS N H2 sing N N 82 LYS CA C sing N N 83 LYS CA CB sing N N 84 LYS CA HA sing N N 85 LYS C O doub N N 86 LYS C OXT sing N N 87 LYS CB CG sing N N 88 LYS CB HB2 sing N N 89 LYS CB HB3 sing N N 90 LYS CG CD sing N N 91 LYS CG HG2 sing N N 92 LYS CG HG3 sing N N 93 LYS CD CE sing N N 94 LYS CD HD2 sing N N 95 LYS CD HD3 sing N N 96 LYS CE NZ sing N N 97 LYS CE HE2 sing N N 98 LYS CE HE3 sing N N 99 LYS NZ HZ1 sing N N 100 LYS NZ HZ2 sing N N 101 LYS NZ HZ3 sing N N 102 LYS OXT HXT sing N N 103 PEG C1 O1 sing N N 104 PEG C1 C2 sing N N 105 PEG C1 H11 sing N N 106 PEG C1 H12 sing N N 107 PEG O1 HO1 sing N N 108 PEG C2 O2 sing N N 109 PEG C2 H21 sing N N 110 PEG C2 H22 sing N N 111 PEG O2 C3 sing N N 112 PEG C3 C4 sing N N 113 PEG C3 H31 sing N N 114 PEG C3 H32 sing N N 115 PEG C4 O4 sing N N 116 PEG C4 H41 sing N N 117 PEG C4 H42 sing N N 118 PEG O4 HO4 sing N N 119 PG4 O1 C1 sing N N 120 PG4 O1 HO1 sing N N 121 PG4 C1 C2 sing N N 122 PG4 C1 H11 sing N N 123 PG4 C1 H12 sing N N 124 PG4 C2 O2 sing N N 125 PG4 C2 H21 sing N N 126 PG4 C2 H22 sing N N 127 PG4 O2 C3 sing N N 128 PG4 C3 C4 sing N N 129 PG4 C3 H31 sing N N 130 PG4 C3 H32 sing N N 131 PG4 C4 O3 sing N N 132 PG4 C4 H41 sing N N 133 PG4 C4 H42 sing N N 134 PG4 O3 C5 sing N N 135 PG4 C5 C6 sing N N 136 PG4 C5 H51 sing N N 137 PG4 C5 H52 sing N N 138 PG4 C6 O4 sing N N 139 PG4 C6 H61 sing N N 140 PG4 C6 H62 sing N N 141 PG4 O4 C7 sing N N 142 PG4 C7 C8 sing N N 143 PG4 C7 H71 sing N N 144 PG4 C7 H72 sing N N 145 PG4 C8 O5 sing N N 146 PG4 C8 H81 sing N N 147 PG4 C8 H82 sing N N 148 PG4 O5 HO5 sing N N 149 PRO N CA sing N N 150 PRO N CD sing N N 151 PRO N H sing N N 152 PRO CA C sing N N 153 PRO CA CB sing N N 154 PRO CA HA sing N N 155 PRO C O doub N N 156 PRO C OXT sing N N 157 PRO CB CG sing N N 158 PRO CB HB2 sing N N 159 PRO CB HB3 sing N N 160 PRO CG CD sing N N 161 PRO CG HG2 sing N N 162 PRO CG HG3 sing N N 163 PRO CD HD2 sing N N 164 PRO CD HD3 sing N N 165 PRO OXT HXT sing N N 166 SER N CA sing N N 167 SER N H sing N N 168 SER N H2 sing N N 169 SER CA C sing N N 170 SER CA CB sing N N 171 SER CA HA sing N N 172 SER C O doub N N 173 SER C OXT sing N N 174 SER CB OG sing N N 175 SER CB HB2 sing N N 176 SER CB HB3 sing N N 177 SER OG HG sing N N 178 SER OXT HXT sing N N 179 SO4 S O1 doub N N 180 SO4 S O2 doub N N 181 SO4 S O3 sing N N 182 SO4 S O4 sing N N 183 THR N CA sing N N 184 THR N H sing N N 185 THR N H2 sing N N 186 THR CA C sing N N 187 THR CA CB sing N N 188 THR CA HA sing N N 189 THR C O doub N N 190 THR C OXT sing N N 191 THR CB OG1 sing N N 192 THR CB CG2 sing N N 193 THR CB HB sing N N 194 THR OG1 HG1 sing N N 195 THR CG2 HG21 sing N N 196 THR CG2 HG22 sing N N 197 THR CG2 HG23 sing N N 198 THR OXT HXT sing N N 199 TRP N CA sing N N 200 TRP N H sing N N 201 TRP N H2 sing N N 202 TRP CA C sing N N 203 TRP CA CB sing N N 204 TRP CA HA sing N N 205 TRP C O doub N N 206 TRP C OXT sing N N 207 TRP CB CG sing N N 208 TRP CB HB2 sing N N 209 TRP CB HB3 sing N N 210 TRP CG CD1 doub Y N 211 TRP CG CD2 sing Y N 212 TRP CD1 NE1 sing Y N 213 TRP CD1 HD1 sing N N 214 TRP CD2 CE2 doub Y N 215 TRP CD2 CE3 sing Y N 216 TRP NE1 CE2 sing Y N 217 TRP NE1 HE1 sing N N 218 TRP CE2 CZ2 sing Y N 219 TRP CE3 CZ3 doub Y N 220 TRP CE3 HE3 sing N N 221 TRP CZ2 CH2 doub Y N 222 TRP CZ2 HZ2 sing N N 223 TRP CZ3 CH2 sing Y N 224 TRP CZ3 HZ3 sing N N 225 TRP CH2 HH2 sing N N 226 TRP OXT HXT sing N N 227 VAL N CA sing N N 228 VAL N H sing N N 229 VAL N H2 sing N N 230 VAL CA C sing N N 231 VAL CA CB sing N N 232 VAL CA HA sing N N 233 VAL C O doub N N 234 VAL C OXT sing N N 235 VAL CB CG1 sing N N 236 VAL CB CG2 sing N N 237 VAL CB HB sing N N 238 VAL CG1 HG11 sing N N 239 VAL CG1 HG12 sing N N 240 VAL CG1 HG13 sing N N 241 VAL CG2 HG21 sing N N 242 VAL CG2 HG22 sing N N 243 VAL CG2 HG23 sing N N 244 VAL OXT HXT sing N N 245 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R01AG070895-01A1 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5wor _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 9MIL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016697 _atom_sites.fract_transf_matrix[1][2] 0.009640 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019280 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010666 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #