data_9MP1 # _entry.id 9MP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MP1 pdb_00009mp1 10.2210/pdb9mp1/pdb WWPDB D_1000291493 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-30 ? 2 'Structure model' 1 1 2025-05-14 ? 3 'Structure model' 1 2 2025-06-11 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MP1 _pdbx_database_status.recvd_initial_deposition_date 2024-12-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name PDB _pdbx_database_related.details '1MOZ contains the same DNA bound to another analogue, MTM SA-5-methyl-Trp' _pdbx_database_related.db_id 9MOZ _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email ovts222@uky.edu _pdbx_contact_author.name_first Oleg _pdbx_contact_author.name_last Tsodikov _pdbx_contact_author.name_mi V. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7094-4216 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, C.' 1 ? 'Tsodikov, O.V.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chembiochem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1439-7633 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first e202401084 _citation.page_last e202401084 _citation.title 'The Position of Indole Methylation Controls the Structure, DNA Binding, and Cellular Functions of Mithramycin SA-Trp Analogues.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cbic.202401084 _citation.pdbx_database_id_PubMed 40246689 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, C.' 1 ? primary 'Bhosale, S.' 2 ? primary 'Yasuda, K.' 3 ? primary 'Yetirajam, R.' 4 ? primary 'Leggas, M.' 5 0000-0003-4314-4533 primary 'Rohr, J.' 6 0000-0001-6447-5951 primary 'Tsodikov, O.V.' 7 0000-0001-7094-4216 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*AP*GP*GP*CP*CP*TP*CP*T)-3') ; 3045.005 2 ? ? ? ? 2 non-polymer syn ;methyl (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-dihydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5,10-dihydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-2-methoxyacetyl}amino)-3-(7-methyl-1H-indol-3-yl)propanoate (non-preferred name) ; 1241.329 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 7 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 5 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DG)(DA)(DG)(DG)(DC)(DC)(DT)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AGAGGCCTCT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;methyl (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-dihydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5,10-dihydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-2-methoxyacetyl}amino)-3-(7-methyl-1H-indol-3-yl)propanoate (non-preferred name) ; A1BNK 3 'ZINC ION' ZN 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DC n 1 10 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1BNK non-polymer . ;methyl (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-dihydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5,10-dihydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-2-methoxyacetyl}amino)-3-(7-methyl-1H-indol-3-yl)propanoate (non-preferred name) ; ? 'C62 H84 N2 O24' 1241.329 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DC 9 9 9 DC DC B . n B 1 10 DT 10 10 10 DT DT B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1BNK _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1BNK _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1BNK 1 101 101 A1BNK WWW A . D 3 ZN 1 102 3 ZN ZN A . E 3 ZN 1 103 9 ZN ZN A . F 3 ZN 1 104 13 ZN ZN A . G 3 ZN 1 105 15 ZN ZN A . H 4 NA 1 106 1 NA NA A . I 4 NA 1 107 3 NA NA A . J 4 NA 1 108 4 NA NA A . K 2 A1BNK 1 101 101 A1BNK WWW B . L 3 ZN 1 102 5 ZN ZN B . M 3 ZN 1 103 7 ZN ZN B . N 3 ZN 1 104 16 ZN ZN B . O 5 HOH 1 201 60 HOH HOH A . O 5 HOH 2 202 46 HOH HOH A . O 5 HOH 3 203 117 HOH HOH A . O 5 HOH 4 204 119 HOH HOH A . O 5 HOH 5 205 64 HOH HOH A . O 5 HOH 6 206 1 HOH HOH A . O 5 HOH 7 207 137 HOH HOH A . O 5 HOH 8 208 31 HOH HOH A . O 5 HOH 9 209 67 HOH HOH A . O 5 HOH 10 210 57 HOH HOH A . O 5 HOH 11 211 37 HOH HOH A . O 5 HOH 12 212 41 HOH HOH A . O 5 HOH 13 213 135 HOH HOH A . O 5 HOH 14 214 130 HOH HOH A . O 5 HOH 15 215 123 HOH HOH A . O 5 HOH 16 216 133 HOH HOH A . O 5 HOH 17 217 35 HOH HOH A . O 5 HOH 18 218 36 HOH HOH A . O 5 HOH 19 219 17 HOH HOH A . O 5 HOH 20 220 13 HOH HOH A . O 5 HOH 21 221 34 HOH HOH A . O 5 HOH 22 222 61 HOH HOH A . O 5 HOH 23 223 18 HOH HOH A . O 5 HOH 24 224 129 HOH HOH A . O 5 HOH 25 225 120 HOH HOH A . O 5 HOH 26 226 131 HOH HOH A . O 5 HOH 27 227 14 HOH HOH A . O 5 HOH 28 228 21 HOH HOH A . O 5 HOH 29 229 49 HOH HOH A . O 5 HOH 30 230 126 HOH HOH A . O 5 HOH 31 231 26 HOH HOH A . O 5 HOH 32 232 19 HOH HOH A . O 5 HOH 33 233 27 HOH HOH A . O 5 HOH 34 234 22 HOH HOH A . O 5 HOH 35 235 16 HOH HOH A . O 5 HOH 36 236 121 HOH HOH A . O 5 HOH 37 237 15 HOH HOH A . O 5 HOH 38 238 124 HOH HOH A . P 5 HOH 1 201 76 HOH HOH B . P 5 HOH 2 202 77 HOH HOH B . P 5 HOH 3 203 39 HOH HOH B . P 5 HOH 4 204 2 HOH HOH B . P 5 HOH 5 205 33 HOH HOH B . P 5 HOH 6 206 127 HOH HOH B . P 5 HOH 7 207 128 HOH HOH B . P 5 HOH 8 208 118 HOH HOH B . P 5 HOH 9 209 113 HOH HOH B . P 5 HOH 10 210 40 HOH HOH B . P 5 HOH 11 211 4 HOH HOH B . P 5 HOH 12 212 134 HOH HOH B . P 5 HOH 13 213 32 HOH HOH B . P 5 HOH 14 214 30 HOH HOH B . P 5 HOH 15 215 6 HOH HOH B . P 5 HOH 16 216 44 HOH HOH B . P 5 HOH 17 217 48 HOH HOH B . P 5 HOH 18 218 55 HOH HOH B . P 5 HOH 19 219 10 HOH HOH B . P 5 HOH 20 220 136 HOH HOH B . P 5 HOH 21 221 114 HOH HOH B . P 5 HOH 22 222 43 HOH HOH B . P 5 HOH 23 223 3 HOH HOH B . P 5 HOH 24 224 28 HOH HOH B . P 5 HOH 25 225 8 HOH HOH B . P 5 HOH 26 226 12 HOH HOH B . P 5 HOH 27 227 5 HOH HOH B . P 5 HOH 28 228 11 HOH HOH B . P 5 HOH 29 229 99 HOH HOH B . P 5 HOH 30 230 29 HOH HOH B . P 5 HOH 31 231 122 HOH HOH B . P 5 HOH 32 232 115 HOH HOH B . P 5 HOH 33 233 9 HOH HOH B . P 5 HOH 34 234 7 HOH HOH B . P 5 HOH 35 235 125 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9MP1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 94.184 _cell.length_a_esd ? _cell.length_b 94.184 _cell.length_b_esd ? _cell.length_c 94.184 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MP1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 78.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Reservoir: 10-35% v/v 2-methyl-2,4-pentanediol Drop: 0.5 mM double-stranded DNA, 1.0 mM MTM analogue, 10 mM sodium cacodylate pH 6.0, 4 mM zinc acetate dihydrate and 2 mM spermine ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.975 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9MP1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.08 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9078 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 23.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 47.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 434 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 24.8 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.958 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 43.614 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MP1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.08 _refine.ls_d_res_low 38.48 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8615 _refine.ls_number_reflns_R_free 424 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.94 _refine.ls_percent_reflns_R_free 4.7 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22060 _refine.ls_R_factor_R_free 0.24810 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21940 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.146 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.050 _refine.overall_SU_ML 0.101 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 2.08 _refine_hist.d_res_low 38.48 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 663 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 186 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.014 674 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 378 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.186 1.711 988 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.214 3.000 896 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.050 0.200 108 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 326 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 122 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.477 4.429 674 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.462 4.414 656 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.082 6.625 989 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.030 42.763 971 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.926 42.204 955 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.082 _refine_ls_shell.d_res_low 2.136 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_R_work 628 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.294 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.357 # _struct.entry_id 9MP1 _struct.title 'Crystal structure of mithramycin analogue MTM SA-7-methyl-Trp in complex with double-stranded DNA AGAGGCCTCT' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MP1 _struct_keywords.text 'DNA-drug complex, transcription, minor groove, natural product, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 5 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9MP1 _struct_ref.pdbx_db_accession 9MP1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9MP1 A 1 ? 10 ? 9MP1 1 ? 10 ? 1 10 2 1 9MP1 B 1 ? 10 ? 9MP1 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2810 ? 1 MORE -245 ? 1 'SSA (A^2)' 4610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DA 1 N7 ? ? ? 1_555 E ZN . ZN ? ? A DA 1 A ZN 103 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc2 metalc ? ? A DA 1 "O5'" ? ? ? 1_555 I NA . NA ? ? A DA 1 A NA 107 1_555 ? ? ? ? ? ? ? 2.827 ? ? metalc3 metalc ? ? A DG 2 OP2 ? ? ? 1_555 I NA . NA ? ? A DG 2 A NA 107 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc4 metalc ? ? A DG 4 N7 ? ? ? 1_555 G ZN . ZN ? ? A DG 4 A ZN 105 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc5 metalc ? ? A DG 4 OP1 ? ? ? 1_555 J NA . NA ? ? A DG 4 A NA 108 1_555 ? ? ? ? ? ? ? 2.851 ? ? metalc6 metalc ? ? A DG 5 N7 ? ? ? 1_555 F ZN . ZN ? ? A DG 5 A ZN 104 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc7 metalc ? ? A DG 5 OP2 ? ? ? 1_555 H NA . NA ? ? A DG 5 A NA 106 1_555 ? ? ? ? ? ? ? 2.596 ? ? metalc8 metalc ? ? A DG 5 "O5'" ? ? ? 1_555 H NA . NA ? ? A DG 5 A NA 106 1_555 ? ? ? ? ? ? ? 2.886 ? ? metalc9 metalc ? ? C A1BNK . O14 ? ? ? 1_555 D ZN . ZN ? ? A A1BNK 101 A ZN 102 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc10 metalc ? ? C A1BNK . O15 ? ? ? 1_555 D ZN . ZN ? ? A A1BNK 101 A ZN 102 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc11 metalc ? ? D ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc12 metalc ? ? D ZN . ZN ? ? ? 1_555 K A1BNK . O14 ? ? A ZN 102 B A1BNK 101 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc13 metalc ? ? D ZN . ZN ? ? ? 1_555 K A1BNK . O15 ? ? A ZN 102 B A1BNK 101 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc14 metalc ? ? D ZN . ZN ? ? ? 1_555 P HOH . O ? ? A ZN 102 B HOH 204 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc15 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 A HOH 219 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc16 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 A HOH 220 21_455 ? ? ? ? ? ? ? 2.044 ? ? metalc17 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 A HOH 223 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc18 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 A HOH 227 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc19 metalc ? ? E ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 103 A HOH 235 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc20 metalc ? ? F ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 104 A HOH 228 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc21 metalc ? ? G ZN . ZN ? ? ? 1_555 O HOH . O ? ? A ZN 105 A HOH 234 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc22 metalc ? ? B DA 1 N7 ? ? ? 1_555 M ZN . ZN ? ? B DA 1 B ZN 103 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc23 metalc ? ? B DA 3 N7 ? ? ? 1_555 N ZN . ZN ? ? B DA 3 B ZN 104 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc24 metalc ? ? B DG 4 N7 ? ? ? 1_555 L ZN . ZN ? ? B DG 4 B ZN 102 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc25 metalc ? ? L ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 102 B HOH 211 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc26 metalc ? ? L ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 102 B HOH 215 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc27 metalc ? ? L ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 102 B HOH 223 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc28 metalc ? ? L ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 102 B HOH 227 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc29 metalc ? ? L ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 102 B HOH 234 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc30 metalc ? ? M ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 103 B HOH 219 23_545 ? ? ? ? ? ? ? 2.045 ? ? metalc31 metalc ? ? M ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 103 B HOH 225 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc32 metalc ? ? M ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 103 B HOH 226 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc33 metalc ? ? M ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 103 B HOH 228 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc34 metalc ? ? M ZN . ZN ? ? ? 1_555 P HOH . O ? ? B ZN 103 B HOH 233 1_555 ? ? ? ? ? ? ? 2.057 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 1 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 1 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 10 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 10 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 219 ? 1_555 100.9 ? 2 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 220 ? 21_455 96.8 ? 3 O ? O HOH . ? A HOH 219 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 220 ? 21_455 93.2 ? 4 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 223 ? 1_555 86.4 ? 5 O ? O HOH . ? A HOH 219 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 223 ? 1_555 93.6 ? 6 O ? O HOH . ? A HOH 220 ? 21_455 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 223 ? 1_555 171.8 ? 7 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 227 ? 1_555 89.1 ? 8 O ? O HOH . ? A HOH 219 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 227 ? 1_555 168.9 ? 9 O ? O HOH . ? A HOH 220 ? 21_455 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 227 ? 1_555 90.3 ? 10 O ? O HOH . ? A HOH 223 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 227 ? 1_555 82.2 ? 11 N7 ? A DA 1 ? A DA 1 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 176.8 ? 12 O ? O HOH . ? A HOH 219 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 81.5 ? 13 O ? O HOH . ? A HOH 220 ? 21_455 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 85.1 ? 14 O ? O HOH . ? A HOH 223 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 91.4 ? 15 O ? O HOH . ? A HOH 227 ? 1_555 ZN ? E ZN . ? A ZN 103 ? 1_555 O ? O HOH . ? A HOH 235 ? 1_555 88.3 ? 16 "O5'" ? A DA 1 ? A DA 1 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 OP2 ? A DG 2 ? A DG 2 ? 1_555 91.6 ? 17 N7 ? A DG 4 ? A DG 4 ? 1_555 ZN ? G ZN . ? A ZN 105 ? 1_555 O ? O HOH . ? A HOH 234 ? 1_555 166.8 ? 18 N7 ? A DG 5 ? A DG 5 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? O HOH . ? A HOH 228 ? 1_555 113.3 ? 19 OP2 ? A DG 5 ? A DG 5 ? 1_555 NA ? H NA . ? A NA 106 ? 1_555 "O5'" ? A DG 5 ? A DG 5 ? 1_555 52.3 ? 20 O14 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O15 ? C A1BNK . ? A A1BNK 101 ? 1_555 78.2 ? 21 O14 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 93.9 ? 22 O15 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 96.6 ? 23 O14 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O14 ? K A1BNK . ? B A1BNK 101 ? 1_555 87.7 ? 24 O15 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O14 ? K A1BNK . ? B A1BNK 101 ? 1_555 98.3 ? 25 O ? O HOH . ? A HOH 206 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O14 ? K A1BNK . ? B A1BNK 101 ? 1_555 165.1 ? 26 O14 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O15 ? K A1BNK . ? B A1BNK 101 ? 1_555 96.0 ? 27 O15 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O15 ? K A1BNK . ? B A1BNK 101 ? 1_555 174.1 ? 28 O ? O HOH . ? A HOH 206 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O15 ? K A1BNK . ? B A1BNK 101 ? 1_555 82.4 ? 29 O14 ? K A1BNK . ? B A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O15 ? K A1BNK . ? B A1BNK 101 ? 1_555 82.7 ? 30 O14 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? P HOH . ? B HOH 204 ? 1_555 164.9 ? 31 O15 ? C A1BNK . ? A A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? P HOH . ? B HOH 204 ? 1_555 87.1 ? 32 O ? O HOH . ? A HOH 206 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? P HOH . ? B HOH 204 ? 1_555 84.0 ? 33 O14 ? K A1BNK . ? B A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? P HOH . ? B HOH 204 ? 1_555 98.2 ? 34 O15 ? K A1BNK . ? B A1BNK 101 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 O ? P HOH . ? B HOH 204 ? 1_555 98.6 ? 35 N7 ? B DA 1 ? B DA 1 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 219 ? 23_545 97.6 ? 36 N7 ? B DA 1 ? B DA 1 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 225 ? 1_555 92.7 ? 37 O ? P HOH . ? B HOH 219 ? 23_545 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 225 ? 1_555 92.7 ? 38 N7 ? B DA 1 ? B DA 1 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 226 ? 1_555 90.2 ? 39 O ? P HOH . ? B HOH 219 ? 23_545 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 226 ? 1_555 170.7 ? 40 O ? P HOH . ? B HOH 225 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 226 ? 1_555 91.9 ? 41 N7 ? B DA 1 ? B DA 1 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 228 ? 1_555 91.6 ? 42 O ? P HOH . ? B HOH 219 ? 23_545 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 228 ? 1_555 88.6 ? 43 O ? P HOH . ? B HOH 225 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 228 ? 1_555 175.4 ? 44 O ? P HOH . ? B HOH 226 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 228 ? 1_555 86.2 ? 45 N7 ? B DA 1 ? B DA 1 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 233 ? 1_555 178.1 ? 46 O ? P HOH . ? B HOH 219 ? 23_545 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 233 ? 1_555 84.3 ? 47 O ? P HOH . ? B HOH 225 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 233 ? 1_555 87.7 ? 48 O ? P HOH . ? B HOH 226 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 233 ? 1_555 87.9 ? 49 O ? P HOH . ? B HOH 228 ? 1_555 ZN ? M ZN . ? B ZN 103 ? 1_555 O ? P HOH . ? B HOH 233 ? 1_555 88.0 ? 50 N7 ? B DG 4 ? B DG 4 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 211 ? 1_555 97.5 ? 51 N7 ? B DG 4 ? B DG 4 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 215 ? 1_555 101.9 ? 52 O ? P HOH . ? B HOH 211 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 215 ? 1_555 114.8 ? 53 N7 ? B DG 4 ? B DG 4 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 223 ? 1_555 85.9 ? 54 O ? P HOH . ? B HOH 211 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 223 ? 1_555 80.2 ? 55 O ? P HOH . ? B HOH 215 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 223 ? 1_555 161.5 ? 56 N7 ? B DG 4 ? B DG 4 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 227 ? 1_555 99.1 ? 57 O ? P HOH . ? B HOH 211 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 227 ? 1_555 160.6 ? 58 O ? P HOH . ? B HOH 215 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 227 ? 1_555 71.3 ? 59 O ? P HOH . ? B HOH 223 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 227 ? 1_555 91.1 ? 60 N7 ? B DG 4 ? B DG 4 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 234 ? 1_555 173.6 ? 61 O ? P HOH . ? B HOH 211 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 234 ? 1_555 87.4 ? 62 O ? P HOH . ? B HOH 215 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 234 ? 1_555 72.3 ? 63 O ? P HOH . ? B HOH 223 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 234 ? 1_555 99.0 ? 64 O ? P HOH . ? B HOH 227 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? P HOH . ? B HOH 234 ? 1_555 76.8 ? # _pdbx_entry_details.entry_id 9MP1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 237 ? 5.82 . 2 1 O ? A HOH 238 ? 6.36 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1BNK O4 O N N 1 A1BNK O3 O N N 2 A1BNK O2 O N N 3 A1BNK C1 C N S 4 A1BNK C2 C N N 5 A1BNK C17 C Y N 6 A1BNK C18 C Y N 7 A1BNK C19 C Y N 8 A1BNK C C N R 9 A1BNK C16 C N N 10 A1BNK C15 C N N 11 A1BNK C21 C N S 12 A1BNK C20 C N N 13 A1BNK O14 O N N 14 A1BNK C43 C Y N 15 A1BNK C42 C Y N 16 A1BNK C41 C Y N 17 A1BNK O15 O N N 18 A1BNK C44 C Y N 19 A1BNK C45 C Y N 20 A1BNK C58 C Y N 21 A1BNK C59 C N N 22 A1BNK C60 C Y N 23 A1BNK O23 O N N 24 A1BNK O16 O N N 25 A1BNK C9 C Y N 26 A1BNK C8 C Y N 27 A1BNK C7 C Y N 28 A1BNK C10 C Y N 29 A1BNK C5 C Y N 30 A1BNK C6 C Y N 31 A1BNK N1 N Y N 32 A1BNK C3 C N S 33 A1BNK C4 C N N 34 A1BNK N N N N 35 A1BNK C11 C Y N 36 A1BNK C14 C N N 37 A1BNK C12 C Y N 38 A1BNK C13 C N N 39 A1BNK O1 O N N 40 A1BNK O O N N 41 A1BNK C61 C N N 42 A1BNK C46 C N S 43 A1BNK C47 C N N 44 A1BNK C48 C N R 45 A1BNK C49 C N R 46 A1BNK C50 C N R 47 A1BNK C51 C N N 48 A1BNK O17 O N N 49 A1BNK O19 O N N 50 A1BNK O18 O N N 51 A1BNK C52 C N S 52 A1BNK C53 C N N 53 A1BNK C54 C N R 54 A1BNK C55 C N S 55 A1BNK C56 C N R 56 A1BNK C57 C N N 57 A1BNK O20 O N N 58 A1BNK O22 O N N 59 A1BNK O21 O N N 60 A1BNK C22 C N S 61 A1BNK C23 C N N 62 A1BNK C24 C N R 63 A1BNK C25 C N R 64 A1BNK C26 C N R 65 A1BNK C27 C N N 66 A1BNK O5 O N N 67 A1BNK O7 O N N 68 A1BNK O6 O N N 69 A1BNK C28 C N S 70 A1BNK C29 C N N 71 A1BNK C30 C N R 72 A1BNK C31 C N S 73 A1BNK C32 C N R 74 A1BNK C33 C N N 75 A1BNK O8 O N N 76 A1BNK O10 O N N 77 A1BNK O9 O N N 78 A1BNK C34 C N S 79 A1BNK C35 C N N 80 A1BNK C36 C N S 81 A1BNK C37 C N R 82 A1BNK C38 C N R 83 A1BNK C39 C N N 84 A1BNK C40 C N N 85 A1BNK O12 O N N 86 A1BNK O11 O N N 87 A1BNK O13 O N N 88 A1BNK H1 H N N 89 A1BNK H2 H N N 90 A1BNK H3 H N N 91 A1BNK H4 H N N 92 A1BNK H5 H N N 93 A1BNK H6 H N N 94 A1BNK H7 H N N 95 A1BNK H8 H N N 96 A1BNK H15 H N N 97 A1BNK H9 H N N 98 A1BNK H14 H N N 99 A1BNK H11 H N N 100 A1BNK H12 H N N 101 A1BNK H13 H N N 102 A1BNK H10 H N N 103 A1BNK H16 H N N 104 A1BNK H17 H N N 105 A1BNK H18 H N N 106 A1BNK H19 H N N 107 A1BNK H20 H N N 108 A1BNK H21 H N N 109 A1BNK H22 H N N 110 A1BNK H23 H N N 111 A1BNK H24 H N N 112 A1BNK H25 H N N 113 A1BNK H26 H N N 114 A1BNK H27 H N N 115 A1BNK H28 H N N 116 A1BNK H29 H N N 117 A1BNK H30 H N N 118 A1BNK H31 H N N 119 A1BNK H32 H N N 120 A1BNK H33 H N N 121 A1BNK H34 H N N 122 A1BNK H35 H N N 123 A1BNK H36 H N N 124 A1BNK H37 H N N 125 A1BNK H38 H N N 126 A1BNK H39 H N N 127 A1BNK H40 H N N 128 A1BNK H41 H N N 129 A1BNK H42 H N N 130 A1BNK H43 H N N 131 A1BNK H44 H N N 132 A1BNK H45 H N N 133 A1BNK H46 H N N 134 A1BNK H47 H N N 135 A1BNK H48 H N N 136 A1BNK H49 H N N 137 A1BNK H50 H N N 138 A1BNK H51 H N N 139 A1BNK H52 H N N 140 A1BNK H53 H N N 141 A1BNK H54 H N N 142 A1BNK H55 H N N 143 A1BNK H56 H N N 144 A1BNK H57 H N N 145 A1BNK H58 H N N 146 A1BNK H59 H N N 147 A1BNK H60 H N N 148 A1BNK H61 H N N 149 A1BNK H62 H N N 150 A1BNK H63 H N N 151 A1BNK H64 H N N 152 A1BNK H65 H N N 153 A1BNK H66 H N N 154 A1BNK H67 H N N 155 A1BNK H68 H N N 156 A1BNK H69 H N N 157 A1BNK H70 H N N 158 A1BNK H71 H N N 159 A1BNK H72 H N N 160 A1BNK H73 H N N 161 A1BNK H74 H N N 162 A1BNK H75 H N N 163 A1BNK H76 H N N 164 A1BNK H77 H N N 165 A1BNK H78 H N N 166 A1BNK H79 H N N 167 A1BNK H80 H N N 168 A1BNK H81 H N N 169 A1BNK H82 H N N 170 A1BNK H83 H N N 171 A1BNK H84 H N N 172 DA OP3 O N N 173 DA P P N N 174 DA OP1 O N N 175 DA OP2 O N N 176 DA "O5'" O N N 177 DA "C5'" C N N 178 DA "C4'" C N R 179 DA "O4'" O N N 180 DA "C3'" C N S 181 DA "O3'" O N N 182 DA "C2'" C N N 183 DA "C1'" C N R 184 DA N9 N Y N 185 DA C8 C Y N 186 DA N7 N Y N 187 DA C5 C Y N 188 DA C6 C Y N 189 DA N6 N N N 190 DA N1 N Y N 191 DA C2 C Y N 192 DA N3 N Y N 193 DA C4 C Y N 194 DA HOP3 H N N 195 DA HOP2 H N N 196 DA "H5'" H N N 197 DA "H5''" H N N 198 DA "H4'" H N N 199 DA "H3'" H N N 200 DA "HO3'" H N N 201 DA "H2'" H N N 202 DA "H2''" H N N 203 DA "H1'" H N N 204 DA H8 H N N 205 DA H61 H N N 206 DA H62 H N N 207 DA H2 H N N 208 DC OP3 O N N 209 DC P P N N 210 DC OP1 O N N 211 DC OP2 O N N 212 DC "O5'" O N N 213 DC "C5'" C N N 214 DC "C4'" C N R 215 DC "O4'" O N N 216 DC "C3'" C N S 217 DC "O3'" O N N 218 DC "C2'" C N N 219 DC "C1'" C N R 220 DC N1 N N N 221 DC C2 C N N 222 DC O2 O N N 223 DC N3 N N N 224 DC C4 C N N 225 DC N4 N N N 226 DC C5 C N N 227 DC C6 C N N 228 DC HOP3 H N N 229 DC HOP2 H N N 230 DC "H5'" H N N 231 DC "H5''" H N N 232 DC "H4'" H N N 233 DC "H3'" H N N 234 DC "HO3'" H N N 235 DC "H2'" H N N 236 DC "H2''" H N N 237 DC "H1'" H N N 238 DC H41 H N N 239 DC H42 H N N 240 DC H5 H N N 241 DC H6 H N N 242 DG OP3 O N N 243 DG P P N N 244 DG OP1 O N N 245 DG OP2 O N N 246 DG "O5'" O N N 247 DG "C5'" C N N 248 DG "C4'" C N R 249 DG "O4'" O N N 250 DG "C3'" C N S 251 DG "O3'" O N N 252 DG "C2'" C N N 253 DG "C1'" C N R 254 DG N9 N Y N 255 DG C8 C Y N 256 DG N7 N Y N 257 DG C5 C Y N 258 DG C6 C N N 259 DG O6 O N N 260 DG N1 N N N 261 DG C2 C N N 262 DG N2 N N N 263 DG N3 N N N 264 DG C4 C Y N 265 DG HOP3 H N N 266 DG HOP2 H N N 267 DG "H5'" H N N 268 DG "H5''" H N N 269 DG "H4'" H N N 270 DG "H3'" H N N 271 DG "HO3'" H N N 272 DG "H2'" H N N 273 DG "H2''" H N N 274 DG "H1'" H N N 275 DG H8 H N N 276 DG H1 H N N 277 DG H21 H N N 278 DG H22 H N N 279 DT OP3 O N N 280 DT P P N N 281 DT OP1 O N N 282 DT OP2 O N N 283 DT "O5'" O N N 284 DT "C5'" C N N 285 DT "C4'" C N R 286 DT "O4'" O N N 287 DT "C3'" C N S 288 DT "O3'" O N N 289 DT "C2'" C N N 290 DT "C1'" C N R 291 DT N1 N N N 292 DT C2 C N N 293 DT O2 O N N 294 DT N3 N N N 295 DT C4 C N N 296 DT O4 O N N 297 DT C5 C N N 298 DT C7 C N N 299 DT C6 C N N 300 DT HOP3 H N N 301 DT HOP2 H N N 302 DT "H5'" H N N 303 DT "H5''" H N N 304 DT "H4'" H N N 305 DT "H3'" H N N 306 DT "HO3'" H N N 307 DT "H2'" H N N 308 DT "H2''" H N N 309 DT "H1'" H N N 310 DT H3 H N N 311 DT H71 H N N 312 DT H72 H N N 313 DT H73 H N N 314 DT H6 H N N 315 HOH O O N N 316 HOH H1 H N N 317 HOH H2 H N N 318 NA NA NA N N 319 ZN ZN ZN N N 320 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BNK O22 C54 sing N N 1 A1BNK O18 C49 sing N N 2 A1BNK C53 C54 sing N N 3 A1BNK C53 C52 sing N N 4 A1BNK C55 C54 sing N N 5 A1BNK C55 O21 sing N N 6 A1BNK C55 C56 sing N N 7 A1BNK O19 C52 sing N N 8 A1BNK O19 C48 sing N N 9 A1BNK C49 C48 sing N N 10 A1BNK C49 C50 sing N N 11 A1BNK O20 C52 sing N N 12 A1BNK O20 C56 sing N N 13 A1BNK C51 C50 sing N N 14 A1BNK C57 C56 sing N N 15 A1BNK C48 C47 sing N N 16 A1BNK C50 O17 sing N N 17 A1BNK C47 C46 sing N N 18 A1BNK O17 C46 sing N N 19 A1BNK C46 O16 sing N N 20 A1BNK O16 C45 sing N N 21 A1BNK C10 C11 doub Y N 22 A1BNK C10 C9 sing Y N 23 A1BNK C11 C12 sing Y N 24 A1BNK C9 C8 doub Y N 25 A1BNK C45 C44 doub Y N 26 A1BNK C45 C58 sing Y N 27 A1BNK C59 C58 sing N N 28 A1BNK C44 C43 sing Y N 29 A1BNK C12 C61 sing N N 30 A1BNK C12 C7 doub Y N 31 A1BNK C58 C60 doub Y N 32 A1BNK C8 C7 sing Y N 33 A1BNK C8 C5 sing Y N 34 A1BNK C7 N1 sing Y N 35 A1BNK C43 C18 doub Y N 36 A1BNK C43 C42 sing Y N 37 A1BNK C60 C42 sing Y N 38 A1BNK C60 O23 sing N N 39 A1BNK C18 C17 sing Y N 40 A1BNK C5 C4 sing N N 41 A1BNK C5 C6 doub Y N 42 A1BNK C4 C3 sing N N 43 A1BNK C42 C41 doub Y N 44 A1BNK N1 C6 sing Y N 45 A1BNK C17 C16 sing N N 46 A1BNK C17 C19 doub Y N 47 A1BNK C41 C19 sing Y N 48 A1BNK C41 O15 sing N N 49 A1BNK O1 C13 doub N N 50 A1BNK C3 C13 sing N N 51 A1BNK C3 N sing N N 52 A1BNK C13 O sing N N 53 A1BNK O C14 sing N N 54 A1BNK C16 C sing N N 55 A1BNK N C2 sing N N 56 A1BNK C19 C20 sing N N 57 A1BNK O3 C1 sing N N 58 A1BNK O3 C15 sing N N 59 A1BNK C2 C1 sing N N 60 A1BNK C2 O2 doub N N 61 A1BNK C C1 sing N N 62 A1BNK C C21 sing N N 63 A1BNK C20 C21 sing N N 64 A1BNK C20 O14 doub N N 65 A1BNK C21 O4 sing N N 66 A1BNK O4 C22 sing N N 67 A1BNK C22 O5 sing N N 68 A1BNK C22 C23 sing N N 69 A1BNK O5 C26 sing N N 70 A1BNK C26 C27 sing N N 71 A1BNK C26 C25 sing N N 72 A1BNK C23 C24 sing N N 73 A1BNK C24 C25 sing N N 74 A1BNK C24 O7 sing N N 75 A1BNK C25 O6 sing N N 76 A1BNK O7 C28 sing N N 77 A1BNK C28 O8 sing N N 78 A1BNK C28 C29 sing N N 79 A1BNK O8 C32 sing N N 80 A1BNK C29 C30 sing N N 81 A1BNK C32 C33 sing N N 82 A1BNK C32 C31 sing N N 83 A1BNK C30 C31 sing N N 84 A1BNK C30 O10 sing N N 85 A1BNK C31 O9 sing N N 86 A1BNK O11 C36 sing N N 87 A1BNK C34 O10 sing N N 88 A1BNK C34 O12 sing N N 89 A1BNK C34 C35 sing N N 90 A1BNK C38 O12 sing N N 91 A1BNK C38 C39 sing N N 92 A1BNK C38 C37 sing N N 93 A1BNK C35 C36 sing N N 94 A1BNK C36 C37 sing N N 95 A1BNK C36 C40 sing N N 96 A1BNK O13 C37 sing N N 97 A1BNK C1 H1 sing N N 98 A1BNK C18 H2 sing N N 99 A1BNK C H3 sing N N 100 A1BNK C16 H4 sing N N 101 A1BNK C16 H5 sing N N 102 A1BNK C15 H6 sing N N 103 A1BNK C15 H7 sing N N 104 A1BNK C15 H8 sing N N 105 A1BNK O15 H9 sing N N 106 A1BNK O23 H10 sing N N 107 A1BNK C59 H11 sing N N 108 A1BNK C59 H12 sing N N 109 A1BNK C59 H13 sing N N 110 A1BNK C44 H14 sing N N 111 A1BNK C21 H15 sing N N 112 A1BNK C9 H16 sing N N 113 A1BNK C10 H17 sing N N 114 A1BNK C6 H18 sing N N 115 A1BNK N1 H19 sing N N 116 A1BNK C3 H20 sing N N 117 A1BNK C4 H21 sing N N 118 A1BNK C4 H22 sing N N 119 A1BNK N H23 sing N N 120 A1BNK C11 H24 sing N N 121 A1BNK C14 H25 sing N N 122 A1BNK C14 H26 sing N N 123 A1BNK C14 H27 sing N N 124 A1BNK C61 H28 sing N N 125 A1BNK C61 H29 sing N N 126 A1BNK C61 H30 sing N N 127 A1BNK C46 H31 sing N N 128 A1BNK C47 H32 sing N N 129 A1BNK C47 H33 sing N N 130 A1BNK C48 H34 sing N N 131 A1BNK C49 H35 sing N N 132 A1BNK C50 H36 sing N N 133 A1BNK C51 H37 sing N N 134 A1BNK C51 H38 sing N N 135 A1BNK C51 H39 sing N N 136 A1BNK O18 H40 sing N N 137 A1BNK C52 H41 sing N N 138 A1BNK C53 H42 sing N N 139 A1BNK C53 H43 sing N N 140 A1BNK C54 H44 sing N N 141 A1BNK C55 H45 sing N N 142 A1BNK C56 H46 sing N N 143 A1BNK C57 H47 sing N N 144 A1BNK C57 H48 sing N N 145 A1BNK C57 H49 sing N N 146 A1BNK O22 H50 sing N N 147 A1BNK O21 H51 sing N N 148 A1BNK C22 H52 sing N N 149 A1BNK C23 H53 sing N N 150 A1BNK C23 H54 sing N N 151 A1BNK C24 H55 sing N N 152 A1BNK C25 H56 sing N N 153 A1BNK C26 H57 sing N N 154 A1BNK C27 H58 sing N N 155 A1BNK C27 H59 sing N N 156 A1BNK C27 H60 sing N N 157 A1BNK O6 H61 sing N N 158 A1BNK C28 H62 sing N N 159 A1BNK C29 H63 sing N N 160 A1BNK C29 H64 sing N N 161 A1BNK C30 H65 sing N N 162 A1BNK C31 H66 sing N N 163 A1BNK C32 H67 sing N N 164 A1BNK C33 H68 sing N N 165 A1BNK C33 H69 sing N N 166 A1BNK C33 H70 sing N N 167 A1BNK O9 H71 sing N N 168 A1BNK C34 H72 sing N N 169 A1BNK C35 H73 sing N N 170 A1BNK C35 H74 sing N N 171 A1BNK C37 H75 sing N N 172 A1BNK C38 H76 sing N N 173 A1BNK C39 H77 sing N N 174 A1BNK C39 H78 sing N N 175 A1BNK C39 H79 sing N N 176 A1BNK C40 H80 sing N N 177 A1BNK C40 H81 sing N N 178 A1BNK C40 H82 sing N N 179 A1BNK O11 H83 sing N N 180 A1BNK O13 H84 sing N N 181 DA OP3 P sing N N 182 DA OP3 HOP3 sing N N 183 DA P OP1 doub N N 184 DA P OP2 sing N N 185 DA P "O5'" sing N N 186 DA OP2 HOP2 sing N N 187 DA "O5'" "C5'" sing N N 188 DA "C5'" "C4'" sing N N 189 DA "C5'" "H5'" sing N N 190 DA "C5'" "H5''" sing N N 191 DA "C4'" "O4'" sing N N 192 DA "C4'" "C3'" sing N N 193 DA "C4'" "H4'" sing N N 194 DA "O4'" "C1'" sing N N 195 DA "C3'" "O3'" sing N N 196 DA "C3'" "C2'" sing N N 197 DA "C3'" "H3'" sing N N 198 DA "O3'" "HO3'" sing N N 199 DA "C2'" "C1'" sing N N 200 DA "C2'" "H2'" sing N N 201 DA "C2'" "H2''" sing N N 202 DA "C1'" N9 sing N N 203 DA "C1'" "H1'" sing N N 204 DA N9 C8 sing Y N 205 DA N9 C4 sing Y N 206 DA C8 N7 doub Y N 207 DA C8 H8 sing N N 208 DA N7 C5 sing Y N 209 DA C5 C6 sing Y N 210 DA C5 C4 doub Y N 211 DA C6 N6 sing N N 212 DA C6 N1 doub Y N 213 DA N6 H61 sing N N 214 DA N6 H62 sing N N 215 DA N1 C2 sing Y N 216 DA C2 N3 doub Y N 217 DA C2 H2 sing N N 218 DA N3 C4 sing Y N 219 DC OP3 P sing N N 220 DC OP3 HOP3 sing N N 221 DC P OP1 doub N N 222 DC P OP2 sing N N 223 DC P "O5'" sing N N 224 DC OP2 HOP2 sing N N 225 DC "O5'" "C5'" sing N N 226 DC "C5'" "C4'" sing N N 227 DC "C5'" "H5'" sing N N 228 DC "C5'" "H5''" sing N N 229 DC "C4'" "O4'" sing N N 230 DC "C4'" "C3'" sing N N 231 DC "C4'" "H4'" sing N N 232 DC "O4'" "C1'" sing N N 233 DC "C3'" "O3'" sing N N 234 DC "C3'" "C2'" sing N N 235 DC "C3'" "H3'" sing N N 236 DC "O3'" "HO3'" sing N N 237 DC "C2'" "C1'" sing N N 238 DC "C2'" "H2'" sing N N 239 DC "C2'" "H2''" sing N N 240 DC "C1'" N1 sing N N 241 DC "C1'" "H1'" sing N N 242 DC N1 C2 sing N N 243 DC N1 C6 sing N N 244 DC C2 O2 doub N N 245 DC C2 N3 sing N N 246 DC N3 C4 doub N N 247 DC C4 N4 sing N N 248 DC C4 C5 sing N N 249 DC N4 H41 sing N N 250 DC N4 H42 sing N N 251 DC C5 C6 doub N N 252 DC C5 H5 sing N N 253 DC C6 H6 sing N N 254 DG OP3 P sing N N 255 DG OP3 HOP3 sing N N 256 DG P OP1 doub N N 257 DG P OP2 sing N N 258 DG P "O5'" sing N N 259 DG OP2 HOP2 sing N N 260 DG "O5'" "C5'" sing N N 261 DG "C5'" "C4'" sing N N 262 DG "C5'" "H5'" sing N N 263 DG "C5'" "H5''" sing N N 264 DG "C4'" "O4'" sing N N 265 DG "C4'" "C3'" sing N N 266 DG "C4'" "H4'" sing N N 267 DG "O4'" "C1'" sing N N 268 DG "C3'" "O3'" sing N N 269 DG "C3'" "C2'" sing N N 270 DG "C3'" "H3'" sing N N 271 DG "O3'" "HO3'" sing N N 272 DG "C2'" "C1'" sing N N 273 DG "C2'" "H2'" sing N N 274 DG "C2'" "H2''" sing N N 275 DG "C1'" N9 sing N N 276 DG "C1'" "H1'" sing N N 277 DG N9 C8 sing Y N 278 DG N9 C4 sing Y N 279 DG C8 N7 doub Y N 280 DG C8 H8 sing N N 281 DG N7 C5 sing Y N 282 DG C5 C6 sing N N 283 DG C5 C4 doub Y N 284 DG C6 O6 doub N N 285 DG C6 N1 sing N N 286 DG N1 C2 sing N N 287 DG N1 H1 sing N N 288 DG C2 N2 sing N N 289 DG C2 N3 doub N N 290 DG N2 H21 sing N N 291 DG N2 H22 sing N N 292 DG N3 C4 sing N N 293 DT OP3 P sing N N 294 DT OP3 HOP3 sing N N 295 DT P OP1 doub N N 296 DT P OP2 sing N N 297 DT P "O5'" sing N N 298 DT OP2 HOP2 sing N N 299 DT "O5'" "C5'" sing N N 300 DT "C5'" "C4'" sing N N 301 DT "C5'" "H5'" sing N N 302 DT "C5'" "H5''" sing N N 303 DT "C4'" "O4'" sing N N 304 DT "C4'" "C3'" sing N N 305 DT "C4'" "H4'" sing N N 306 DT "O4'" "C1'" sing N N 307 DT "C3'" "O3'" sing N N 308 DT "C3'" "C2'" sing N N 309 DT "C3'" "H3'" sing N N 310 DT "O3'" "HO3'" sing N N 311 DT "C2'" "C1'" sing N N 312 DT "C2'" "H2'" sing N N 313 DT "C2'" "H2''" sing N N 314 DT "C1'" N1 sing N N 315 DT "C1'" "H1'" sing N N 316 DT N1 C2 sing N N 317 DT N1 C6 sing N N 318 DT C2 O2 doub N N 319 DT C2 N3 sing N N 320 DT N3 C4 sing N N 321 DT N3 H3 sing N N 322 DT C4 O4 doub N N 323 DT C4 C5 sing N N 324 DT C5 C7 sing N N 325 DT C5 C6 doub N N 326 DT C7 H71 sing N N 327 DT C7 H72 sing N N 328 DT C7 H73 sing N N 329 DT C6 H6 sing N N 330 HOH O H1 sing N N 331 HOH O H2 sing N N 332 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9MP1 'double helix' 9MP1 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 10 1_555 -0.062 -0.081 0.202 -3.204 -24.858 6.343 1 A_DA1:DT10_B A 1 ? B 10 ? 20 1 1 A DG 2 1_555 B DC 9 1_555 -0.239 -0.193 -0.192 -13.820 -14.883 3.039 2 A_DG2:DC9_B A 2 ? B 9 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.085 -0.215 0.259 -9.852 -15.877 4.060 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.378 -0.192 0.100 -6.421 -7.029 -1.042 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.291 -0.140 0.291 1.700 -9.777 -0.005 5 A_DG5:DC6_B A 5 ? B 6 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 0.364 -0.129 0.097 1.129 -7.083 1.528 6 A_DC6:DG5_B A 6 ? B 5 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.023 -0.198 0.170 1.016 -10.573 1.195 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.190 -0.153 0.215 11.572 -5.975 -1.226 8 A_DT8:DA3_B A 8 ? B 3 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.202 -0.148 -0.102 15.358 -19.815 -2.119 9 A_DC9:DG2_B A 9 ? B 2 ? 19 1 1 A DT 10 1_555 B DA 1 1_555 -0.064 -0.132 0.029 9.176 -24.130 -0.405 10 A_DT10:DA1_B A 10 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.419 -0.696 3.491 1.925 7.890 36.465 -2.175 0.921 3.250 12.419 -3.030 37.329 1 AA_DA1DG2:DC9DT10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 -0.018 -0.476 3.233 0.435 1.890 33.209 -1.143 0.103 3.201 3.303 -0.760 33.264 2 AA_DG2DA3:DT8DC9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 0.468 -1.004 3.351 3.885 -1.460 31.674 -1.550 -0.118 3.424 -2.660 -7.079 31.938 3 AA_DA3DG4:DC7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 1.334 -1.453 3.107 0.036 3.799 28.267 -3.749 -2.700 2.893 7.734 -0.074 28.516 4 AA_DG4DG5:DC6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.280 -2.023 3.502 1.137 -5.524 33.915 -2.456 -0.275 3.782 -9.389 -1.933 34.367 5 AA_DG5DC6:DG5DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DC 6 1_555 B DG 5 1_555 A DC 7 1_555 B DG 4 1_555 -1.028 -2.266 3.260 -1.888 3.953 23.464 -6.710 1.899 2.916 9.612 4.591 23.864 6 AA_DC6DC7:DG4DG5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 -1.310 -0.559 3.328 -2.244 6.191 30.669 -2.218 1.995 3.241 11.538 4.182 31.351 7 AA_DC7DT8:DA3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.234 -0.523 3.186 -2.656 -0.138 35.387 -0.839 0.003 3.197 -0.227 4.362 35.484 8 AA_DT8DC9:DG2DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DC 9 1_555 B DG 2 1_555 A DT 10 1_555 B DA 1 1_555 0.297 -0.680 3.384 -0.364 5.799 34.866 -1.992 -0.544 3.229 9.595 0.602 35.332 9 AA_DC9DT10:DA1DG2_BB A 9 ? B 2 ? A 10 ? B 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01CA243529 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5JVW _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9MP1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010618 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010618 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010618 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NA O P ZN # loop_ #