HEADER VIRUS 17-JAN-25 9MWZ TITLE CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D68 USA/IL/14-18952 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VIRAL PROTEIN 2; COMPND 7 CHAIN: B; COMPND 8 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 9 OTHER_DETAILS: RESIDUES 1-11 DELETED; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: VIRAL PROTEIN 3; COMPND 12 CHAIN: C; COMPND 13 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: VIRAL PROTEIN 4; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: P1A,VIRION PROTEIN 4; COMPND 18 OTHER_DETAILS: RESIDUES 1-27 AND 58-68 DELETED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 3 ORGANISM_TAXID: 42789; SOURCE 4 STRAIN: USA/IL/14-18952; SOURCE 5 CELL_LINE: RD; SOURCE 6 ATCC: CCL-136; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 9 ORGANISM_TAXID: 42789; SOURCE 10 STRAIN: USA/IL/14-18952; SOURCE 11 CELL_LINE: RD; SOURCE 12 ATCC: CCL-136; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 15 ORGANISM_TAXID: 42789; SOURCE 16 STRAIN: USA/IL/14-18952; SOURCE 17 CELL_LINE: RD; SOURCE 18 ATCC: CCL-136; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: ENTEROVIRUS D68; SOURCE 21 ORGANISM_TAXID: 42789; SOURCE 22 STRAIN: USA/IL/14-18952; SOURCE 23 CELL_LINE: RD; SOURCE 24 ATCC: CCL-136 KEYWDS VIRUS, ENTEROVIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR L.XU,G.PINTILIE,L.VARANESE,J.E.CARETTE,W.CHIU REVDAT 4 11-JUN-25 9MWZ 1 JRNL REVDAT 3 09-APR-25 9MWZ 1 JRNL REVDAT 2 02-APR-25 9MWZ 1 JRNL REVDAT 1 26-MAR-25 9MWZ 0 JRNL AUTH L.VARANESE,L.XU,C.E.PETERS,G.PINTILIE,D.S.ROBERTS,S.RAJ, JRNL AUTH 2 M.LIU,Y.S.OOI,J.DIEP,W.QIAO,C.M.RICHARDS,J.CALLAWAY, JRNL AUTH 3 C.R.BERTOZZI,S.JABS,E.DE VRIES,F.J.M.VAN KUPPEVELD, JRNL AUTH 4 C.M.NAGAMINE,W.CHIU,J.E.CARETTE JRNL TITL MFSD6 IS AN ENTRY RECEPTOR FOR ENTEROVIRUS D68. JRNL REF NATURE V. 641 1268 2025 JRNL REFN ESSN 1476-4687 JRNL PMID 40132641 JRNL DOI 10.1038/S41586-025-08908-0 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 UCSF CHIMERAX, ISOLDE, RELION, REMARK 3 CRYOSPARC, RELION, CRYOSPARC, RELION, REMARK 3 CRYOSPARC, ISOLDE REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL RIGID FITTING WAS DONE USING CHIMERA REMARK 3 AND THEN ISOLDE WAS USED FOR FLEXIBLE FITTING. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.000 REMARK 3 NUMBER OF PARTICLES : 12930 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9MWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291964. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROVIRUS D68 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.09 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : FREEZING CARRIED OUT WITH 4 S REMARK 245 BLOT TIME, 1 S WAIT TIME. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : ENTEROVIRUS D68 PROPAGATED AND REMARK 245 PURIFIED FROM INFECTION OF RD CELLS REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10400 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT2 2 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT3 2 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT1 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 3 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT1 4 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT2 4 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT3 4 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT2 5 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT3 5 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT1 6 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT1 9 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 9 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT3 9 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT2 10 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT3 10 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT1 11 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT2 11 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT3 11 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT1 12 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT2 12 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT3 12 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT1 13 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT2 13 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT3 13 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT1 14 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT2 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 14 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT1 16 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT2 16 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT3 16 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT1 17 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT3 17 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT1 18 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT2 18 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT3 18 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT1 19 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT2 19 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT3 19 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT3 21 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT1 22 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT2 22 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT3 22 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT1 23 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 23 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT1 24 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT2 24 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT3 24 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT1 25 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT2 25 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT3 25 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT1 26 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT2 26 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT3 26 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT1 27 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 27 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT1 28 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT2 28 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT3 28 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT1 29 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT2 29 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT3 29 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT1 30 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT2 30 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT3 30 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT1 31 -0.500000 0.309017 -0.809017 534.96000 REMARK 350 BIOMT2 31 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 31 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 432.79173 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT1 33 0.809017 -0.500000 0.309017 102.16827 REMARK 350 BIOMT2 33 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT3 33 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT1 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.500000 0.309017 267.48000 REMARK 350 BIOMT2 35 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT3 35 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT1 36 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT2 36 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT3 36 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT2 38 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT1 40 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT2 40 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT3 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT2 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT1 42 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT2 42 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT3 42 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT1 44 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT2 44 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT3 44 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT1 45 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT2 45 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT1 47 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT2 47 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT1 48 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT2 48 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT3 48 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT1 49 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT2 49 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 49 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT1 51 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 51 -0.809017 -0.500000 0.309017 534.96000 REMARK 350 BIOMT3 51 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 52 -0.309017 0.809017 -0.500000 267.48000 REMARK 350 BIOMT2 52 -0.809017 -0.500000 -0.309017 700.27173 REMARK 350 BIOMT3 52 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT1 53 0.500000 0.309017 -0.809017 267.48000 REMARK 350 BIOMT2 53 -0.309017 -0.809017 -0.500000 700.27173 REMARK 350 BIOMT3 53 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT1 54 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 534.96000 REMARK 350 BIOMT3 54 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT1 55 0.500000 0.309017 0.809017 -165.31173 REMARK 350 BIOMT2 55 -0.309017 -0.809017 0.500000 432.79173 REMARK 350 BIOMT3 55 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT1 56 0.809017 -0.500000 -0.309017 267.48000 REMARK 350 BIOMT2 56 -0.500000 -0.309017 -0.809017 700.27173 REMARK 350 BIOMT3 56 0.309017 0.809017 -0.500000 102.16827 REMARK 350 BIOMT1 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 57 0.309017 -0.809017 -0.500000 534.96000 REMARK 350 BIOMT3 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 0.809017 102.16827 REMARK 350 BIOMT2 58 0.309017 -0.809017 0.500000 267.48000 REMARK 350 BIOMT3 58 0.809017 0.500000 0.309017 -165.31173 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 432.79173 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 267.48000 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 -165.31173 REMARK 350 BIOMT1 60 0.000000 0.000000 -1.000000 534.96000 REMARK 350 BIOMT2 60 -1.000000 0.000000 0.000000 534.96000 REMARK 350 BIOMT3 60 0.000000 1.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1065 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1114 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1181 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B2062 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B2181 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG C3041 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C3095 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C3104 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG C3225 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1018 86.44 -154.22 REMARK 500 GLU A1108 0.96 -68.13 REMARK 500 ALA A1250 82.16 53.00 REMARK 500 LYS A1268 -41.03 -148.28 REMARK 500 ALA A1279 106.03 -160.09 REMARK 500 GLU B2027 58.17 -141.09 REMARK 500 ASN B2030 -156.60 55.99 REMARK 500 VAL B2048 -58.76 -130.76 REMARK 500 GLU B2057 -118.08 52.65 REMARK 500 THR B2165 -130.41 -86.37 REMARK 500 ASN C3056 48.38 -89.09 REMARK 500 PHE C3178 48.63 -79.01 REMARK 500 ASN C3180 44.33 -82.03 REMARK 500 THR C3198 -107.95 -125.41 REMARK 500 LEU C3226 79.64 63.97 REMARK 500 ASP D4048 79.41 -151.36 REMARK 500 PRO D4055 39.86 -79.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B2243 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-48705 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D68 USA/IL/14-18952 REMARK 900 RELATED ID: EMD-48713 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D68 USA/IL/14-18952 IN REMARK 900 COMPLEX WITH MFSD6(L3)-FC REMARK 900 RELATED ID: 9MXC RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ENTEROVIRUS D68 USA/IL/14-18952 IN REMARK 900 COMPLEX WITH MFSD6(L3)-FC DBREF1 9MWZ A 1001 1297 UNP A0A1I9KHM1_HED68 DBREF2 9MWZ A A0A1I9KHM1 565 861 DBREF1 9MWZ B 2012 2248 UNP A0A1P7ZRE5_HED68 DBREF2 9MWZ B A0A1P7ZRE5 81 317 DBREF1 9MWZ C 3001 3247 UNP A0A097BW17_HED68 DBREF2 9MWZ C A0A097BW17 318 564 DBREF 9MWZ D 4028 4057 UNP Q68T42 POLG_HED68 29 58 SEQADV 9MWZ GLY A 1271 UNP A0A1I9KHM GLU 835 CONFLICT SEQRES 1 A 297 ILE GLU SER ILE ILE LYS THR ALA THR ASP THR VAL LYS SEQRES 2 A 297 SER GLU ILE ASN ALA GLU LEU GLY VAL VAL PRO SER LEU SEQRES 3 A 297 ASN ALA VAL GLU THR GLY ALA THR SER ASN THR GLU PRO SEQRES 4 A 297 GLU GLU ALA ILE GLN THR ARG THR VAL ILE ASN GLN HIS SEQRES 5 A 297 GLY VAL SER GLU THR LEU VAL GLU ASN PHE LEU SER ARG SEQRES 6 A 297 ALA ALA LEU VAL SER LYS ARG SER PHE GLU TYR LYS ASP SEQRES 7 A 297 HIS THR SER SER ALA ALA GLN THR ASP LYS ASN PHE PHE SEQRES 8 A 297 LYS TRP THR ILE ASN THR ARG SER PHE VAL GLN LEU ARG SEQRES 9 A 297 ARG LYS LEU GLU LEU PHE THR TYR LEU ARG PHE ASP ALA SEQRES 10 A 297 GLU ILE THR ILE LEU THR THR VAL ALA VAL ASN GLY SER SEQRES 11 A 297 SER ASN ASN THR TYR VAL GLY LEU PRO ASP LEU THR LEU SEQRES 12 A 297 GLN ALA MET PHE VAL PRO THR GLY ALA LEU THR PRO GLU SEQRES 13 A 297 LYS GLN ASP SER PHE HIS TRP GLN SER GLY SER ASN ALA SEQRES 14 A 297 SER VAL PHE PHE LYS ILE SER ASP PRO PRO ALA ARG MET SEQRES 15 A 297 THR ILE PRO PHE MET CYS ILE ASN SER ALA TYR SER VAL SEQRES 16 A 297 PHE TYR ASP GLY PHE ALA GLY PHE GLU LYS SER GLY LEU SEQRES 17 A 297 TYR GLY ILE ASN PRO ALA ASP THR ILE GLY ASN LEU CYS SEQRES 18 A 297 VAL ARG ILE VAL ASN GLU HIS GLN PRO VAL GLY PHE THR SEQRES 19 A 297 VAL THR VAL ARG VAL TYR MET LYS PRO LYS HIS ILE LYS SEQRES 20 A 297 ALA TRP ALA PRO ARG PRO PRO ARG THR LEU PRO TYR MET SEQRES 21 A 297 SER ILE ALA ASN ALA ASN TYR LYS GLY LYS GLY ARG ALA SEQRES 22 A 297 PRO ASN ALA LEU ASN ALA ILE ILE GLY ASN ARG ASP SER SEQRES 23 A 297 VAL LYS THR MET PRO HIS ASN ILE VAL THR THR SEQRES 1 B 237 ARG VAL LEU GLN LEU LYS LEU GLY ASN SER ALA ILE VAL SEQRES 2 B 237 THR GLN GLU ALA ALA ASN TYR CYS CYS ALA TYR GLY GLU SEQRES 3 B 237 TRP PRO ASN TYR LEU PRO ASP HIS GLU ALA VAL ALA ILE SEQRES 4 B 237 ASP LYS PRO THR GLN PRO GLU THR ALA THR ASP ARG PHE SEQRES 5 B 237 TYR THR LEU ARG SER VAL LYS TRP GLU ALA GLY SER THR SEQRES 6 B 237 GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU ASN ASN ILE SEQRES 7 B 237 GLY MET PHE GLY GLN ASN VAL GLN HIS HIS TYR LEU TYR SEQRES 8 B 237 ARG SER GLY PHE LEU ILE HIS VAL GLN CYS ASN ALA THR SEQRES 9 B 237 LYS PHE HIS GLN GLY ALA LEU LEU VAL VAL ALA ILE PRO SEQRES 10 B 237 GLU HIS GLN ARG GLY ALA HIS ASN THR ASN THR SER PRO SEQRES 11 B 237 GLY PHE ASP ASP ILE MET LYS GLY GLU GLU GLY GLY THR SEQRES 12 B 237 PHE ASN HIS PRO TYR VAL LEU ASP ASP GLY THR SER LEU SEQRES 13 B 237 ALA CYS ALA THR ILE PHE PRO HIS GLN TRP ILE ASN LEU SEQRES 14 B 237 ARG THR ASN ASN SER ALA THR ILE VAL LEU PRO TRP MET SEQRES 15 B 237 ASN ALA ALA PRO MET ASP PHE PRO LEU ARG HIS ASN GLN SEQRES 16 B 237 TRP THR LEU ALA ILE ILE PRO VAL VAL PRO LEU GLY THR SEQRES 17 B 237 ARG THR MET SER SER MET VAL PRO ILE THR VAL SER ILE SEQRES 18 B 237 ALA PRO MET CYS CYS GLU PHE ASN GLY LEU ARG HIS ALA SEQRES 19 B 237 ILE THR GLN SEQRES 1 C 247 GLY VAL PRO THR TYR LEU LEU PRO GLY SER GLY GLN PHE SEQRES 2 C 247 LEU THR THR ASP ASP HIS SER SER ALA PRO VAL LEU PRO SEQRES 3 C 247 CYS PHE ASN PRO THR PRO GLU MET HIS ILE PRO GLY GLN SEQRES 4 C 247 VAL ARG ASN MET LEU GLU VAL VAL GLN VAL GLU SER MET SEQRES 5 C 247 MET GLU ILE ASN ASN THR GLU SER ALA VAL GLY MET GLU SEQRES 6 C 247 ARG LEU LYS VAL ASP ILE SER ALA LEU THR ASP VAL ASP SEQRES 7 C 247 GLN LEU LEU PHE ASN ILE PRO LEU ASP ILE GLN LEU ASP SEQRES 8 C 247 GLY PRO LEU ARG ASN THR LEU VAL GLY ASN ILE SER ARG SEQRES 9 C 247 TYR TYR THR HIS TRP SER GLY SER LEU GLU MET THR PHE SEQRES 10 C 247 MET PHE CYS GLY SER PHE MET ALA THR GLY LYS LEU ILE SEQRES 11 C 247 LEU CYS TYR THR PRO PRO GLY GLY SER CYS PRO THR THR SEQRES 12 C 247 ARG GLU THR ALA MET LEU GLY THR HIS VAL VAL TRP ASP SEQRES 13 C 247 PHE GLY LEU GLN SER SER VAL THR LEU ILE ILE PRO TRP SEQRES 14 C 247 ILE SER GLY SER HIS TYR ARG MET PHE ASN ASN ASP ALA SEQRES 15 C 247 LYS SER THR ASN ALA ASN VAL GLY TYR VAL THR CYS PHE SEQRES 16 C 247 MET GLN THR ASN LEU ILE VAL PRO SER GLU SER SER ASP SEQRES 17 C 247 THR CYS SER LEU ILE GLY PHE ILE ALA ALA LYS ASP ASP SEQRES 18 C 247 PHE SER LEU ARG LEU MET ARG ASP SER PRO ASP ILE GLY SEQRES 19 C 247 GLN LEU ASP HIS LEU HIS ALA ALA GLU ALA ALA TYR GLN SEQRES 1 D 30 GLN ILE ASN PHE TYR LYS ASP SER TYR ALA ALA SER ALA SEQRES 2 D 30 SER LYS GLN ASP PHE SER GLN ASP PRO SER LYS PHE THR SEQRES 3 D 30 GLU PRO VAL VAL FORMUL 5 HOH *46(H2 O) HELIX 1 AA1 ALA A 1028 GLY A 1032 5 5 HELIX 2 AA2 GLU A 1038 ILE A 1043 1 6 HELIX 3 AA3 VAL A 1054 THR A 1057 5 4 HELIX 4 AA4 LEU A 1058 SER A 1064 1 7 HELIX 5 AA5 PHE A 1100 GLU A 1108 1 9 HELIX 6 AA6 SER A 1160 SER A 1165 5 6 HELIX 7 AA7 ASN A 1212 THR A 1216 5 5 HELIX 8 AA8 TYR B 2035 GLU B 2037 5 3 HELIX 9 AA9 PRO B 2056 THR B 2060 5 5 HELIX 10 AB1 PRO B 2083 ASN B 2087 5 5 HELIX 11 AB2 ILE B 2089 HIS B 2098 1 10 HELIX 12 AB3 GLY B 2142 MET B 2147 1 6 HELIX 13 AB4 LYS B 2148 GLY B 2152 5 5 HELIX 14 AB5 HIS B 2157 LEU B 2161 5 5 HELIX 15 AB6 CYS B 2169 PHE B 2173 5 5 HELIX 16 AB7 MET C 3043 GLN C 3048 1 6 HELIX 17 AB8 VAL C 3062 LYS C 3068 5 7 HELIX 18 AB9 THR C 3097 ARG C 3104 1 8 HELIX 19 AC1 THR C 3143 MET C 3148 1 6 HELIX 20 AC2 ALA C 3242 GLN C 3247 5 6 HELIX 21 AC3 ASP D 4034 ALA D 4038 5 5 HELIX 22 AC4 PRO D 4049 GLU D 4054 1 6 SHEET 1 AA1 2 SER A1003 ILE A1004 0 SHEET 2 AA1 2 SER D4046 GLN D4047 -1 O GLN D4047 N SER A1003 SHEET 1 AA2 5 LEU A1026 ASN A1027 0 SHEET 2 AA2 5 SER C3162 ILE C3167 -1 O SER C3162 N ASN A1027 SHEET 3 AA2 5 LEU C3113 PHE C3119 -1 N MET C3115 O LEU C3165 SHEET 4 AA2 5 THR C3209 ALA C3218 -1 O PHE C3215 N THR C3116 SHEET 5 AA2 5 SER C3051 MET C3052 -1 N SER C3051 O ILE C3216 SHEET 1 AA3 5 LEU A1026 ASN A1027 0 SHEET 2 AA3 5 SER C3162 ILE C3167 -1 O SER C3162 N ASN A1027 SHEET 3 AA3 5 LEU C3113 PHE C3119 -1 N MET C3115 O LEU C3165 SHEET 4 AA3 5 THR C3209 ALA C3218 -1 O PHE C3215 N THR C3116 SHEET 5 AA3 5 VAL C3069 SER C3072 -1 N ILE C3071 O CYS C3210 SHEET 1 AA4 4 ALA A1067 TYR A1076 0 SHEET 2 AA4 4 PHE A1233 PRO A1251 -1 O VAL A1235 N PHE A1074 SHEET 3 AA4 4 PHE A1110 VAL A1127 -1 N LEU A1122 O ARG A1238 SHEET 4 AA4 4 TYR A1193 SER A1194 -1 O TYR A1193 N LEU A1113 SHEET 1 AA5 4 ALA A1180 ILE A1184 0 SHEET 2 AA5 4 PHE A1110 VAL A1127 -1 N ALA A1117 O ILE A1184 SHEET 3 AA5 4 PHE A1233 PRO A1251 -1 O ARG A1238 N LEU A1122 SHEET 4 AA5 4 GLN C3039 VAL C3040 -1 O VAL C3040 N ALA A1248 SHEET 1 AA6 4 PHE A1090 THR A1094 0 SHEET 2 AA6 4 ASN A1219 ILE A1224 -1 O LEU A1220 N TRP A1093 SHEET 3 AA6 4 THR A1142 VAL A1148 -1 N VAL A1148 O ASN A1219 SHEET 4 AA6 4 SER A1170 LYS A1174 -1 O PHE A1173 N LEU A1143 SHEET 1 AA7 2 LEU B2014 LEU B2018 0 SHEET 2 AA7 2 SER B2021 THR B2025 -1 O ILE B2023 N LEU B2016 SHEET 1 AA8 5 CYS B2032 CYS B2033 0 SHEET 2 AA8 5 SER B2185 LEU B2190 1 O VAL B2189 N CYS B2032 SHEET 3 AA8 5 HIS B2099 GLN B2111 -1 N PHE B2106 O LEU B2190 SHEET 4 AA8 5 VAL B2226 LEU B2242 -1 O MET B2235 N GLY B2105 SHEET 5 AA8 5 TYR B2064 THR B2065 -1 N TYR B2064 O ILE B2232 SHEET 1 AA9 5 CYS B2032 CYS B2033 0 SHEET 2 AA9 5 SER B2185 LEU B2190 1 O VAL B2189 N CYS B2032 SHEET 3 AA9 5 HIS B2099 GLN B2111 -1 N PHE B2106 O LEU B2190 SHEET 4 AA9 5 VAL B2226 LEU B2242 -1 O MET B2235 N GLY B2105 SHEET 5 AA9 5 VAL B2069 TRP B2071 -1 N VAL B2069 O ILE B2228 SHEET 1 AB1 5 GLY B2153 THR B2154 0 SHEET 2 AB1 5 TRP B2078 LEU B2082 -1 N TRP B2079 O GLY B2153 SHEET 3 AB1 5 TRP B2207 GLY B2218 -1 O TRP B2207 N LEU B2082 SHEET 4 AB1 5 GLN B2119 PRO B2128 -1 N ILE B2127 O THR B2208 SHEET 5 AB1 5 HIS B2175 ASN B2179 -1 O GLN B2176 N VAL B2124 SHEET 1 AB2 4 LEU C3080 PRO C3085 0 SHEET 2 AB2 4 TYR C3191 MET C3196 -1 O CYS C3194 N LEU C3081 SHEET 3 AB2 4 LYS C3128 THR C3134 -1 N CYS C3132 O THR C3193 SHEET 4 AB2 4 THR C3151 ASP C3156 -1 O THR C3151 N TYR C3133 SHEET 1 AB3 3 ARG C3176 MET C3177 0 SHEET 2 AB3 3 HIS C3108 SER C3110 -1 N TRP C3109 O ARG C3176 SHEET 3 AB3 3 SER C3223 ARG C3225 -1 O ARG C3225 N HIS C3108 CISPEP 1 ALA A 1273 PRO A 1274 0 1.01 CISPEP 2 LEU B 2082 PRO B 2083 0 9.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 363 0 0 22 48 0 0 6 6366 4 0 64 END