HEADER SIGNALING PROTEIN 17-JAN-25 9MX2 TITLE HUMAN G PROTEIN-COUPLED RECEPTOR KINASE 5-D311N IN COMPLEX WITH TITLE 2 SANGIVAMYCIN SOAKED IN PH 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G PROTEIN-COUPLED RECEPTOR KINASE 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G PROTEIN-COUPLED RECEPTOR KINASE GRK5; COMPND 5 EC: 2.7.11.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRK5, GPRK5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GPCR, GRK, G PROTEIN-COUPLED RECEPTOR, G PROTEIN-COUPLED RECEPTOR KEYWDS 2 KINASE, GPCR SIGNALING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,J.J.G.TESMER REVDAT 1 26-NOV-25 9MX2 0 JRNL AUTH Y.CHEN,J.J.G.TESMER JRNL TITL STRUCTURES OF G PROTEIN-COUPLED RECEPTOR KINASE 5 IN JRNL TITL 2 MULTIPLE CONFORMATIONS REVEALS MECHANISM OF ACTIVATION AND JRNL TITL 3 INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.346 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9500 - 6.6500 0.99 1416 159 0.2055 0.2907 REMARK 3 2 6.6500 - 5.2900 0.99 1344 149 0.3220 0.3441 REMARK 3 3 5.2900 - 4.6200 1.00 1317 146 0.2955 0.3535 REMARK 3 4 4.6200 - 4.2000 1.00 1307 146 0.3083 0.3981 REMARK 3 5 4.2000 - 3.9000 0.97 1269 142 0.3902 0.4527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.681 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.684 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 131.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4490 REMARK 3 ANGLE : 1.027 6042 REMARK 3 CHIRALITY : 0.041 638 REMARK 3 PLANARITY : 0.018 786 REMARK 3 DIHEDRAL : 16.749 1734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9MX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1000291987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920120 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83520 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.760 REMARK 200 RESOLUTION RANGE LOW (A) : 34.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200 MM POTASSIUM CITRATE REMARK 280 TRIBASIC PH 8.5, SOAKED IN THE SAME SOLUTION AT PH 6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.00250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.15450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.15450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.50125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.15450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.15450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.50375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.15450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.15450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.50125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.15450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.15450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.50375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.00250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 PRO A 543 REMARK 465 GLU A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 LYS A 547 REMARK 465 LYS A 548 REMARK 465 GLY A 549 REMARK 465 LEU A 550 REMARK 465 LEU A 551 REMARK 465 GLN A 552 REMARK 465 ARG A 553 REMARK 465 LEU A 554 REMARK 465 PHE A 555 REMARK 465 LYS A 556 REMARK 465 ARG A 557 REMARK 465 GLN A 558 REMARK 465 HIS A 559 REMARK 465 GLN A 560 REMARK 465 ASN A 561 REMARK 465 ASN A 562 REMARK 465 SER A 563 REMARK 465 LYS A 564 REMARK 465 SER A 565 REMARK 465 SER A 566 REMARK 465 PRO A 567 REMARK 465 SER A 568 REMARK 465 SER A 569 REMARK 465 LYS A 570 REMARK 465 THR A 571 REMARK 465 SER A 572 REMARK 465 PHE A 573 REMARK 465 ASN A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 ILE A 577 REMARK 465 ASN A 578 REMARK 465 SER A 579 REMARK 465 ASN A 580 REMARK 465 HIS A 581 REMARK 465 VAL A 582 REMARK 465 SER A 583 REMARK 465 SER A 584 REMARK 465 ASN A 585 REMARK 465 SER A 586 REMARK 465 THR A 587 REMARK 465 GLY A 588 REMARK 465 SER A 589 REMARK 465 SER A 590 REMARK 465 VAL A 591 REMARK 465 ASP A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 HIS A 597 REMARK 465 HIS A 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 100 H LYS A 103 1.49 REMARK 500 O CYS A 54 H LYS A 59 1.53 REMARK 500 HH TYR A 251 OE1 GLU A 514 1.57 REMARK 500 OH TYR A 251 OE1 GLU A 514 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 449 HH12 ARG A 449 7555 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 449 CG ARG A 449 CD -0.262 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 201 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 343 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 449 CA - CB - CG ANGL. DEV. = -23.2 DEGREES REMARK 500 ARG A 449 CG - CD - NE ANGL. DEV. = -25.5 DEGREES REMARK 500 ARG A 449 CD - NE - CZ ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 449 NH1 - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 449 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 41.62 -100.15 REMARK 500 ASP A 58 -67.09 -152.04 REMARK 500 GLN A 135 -75.42 -65.00 REMARK 500 TYR A 189 -161.19 -121.10 REMARK 500 ASP A 329 70.75 57.12 REMARK 500 LEU A 424 48.48 -99.06 REMARK 500 LYS A 443 -7.46 -59.59 REMARK 500 HIS A 445 130.56 -32.66 REMARK 500 PHE A 448 46.56 -81.72 REMARK 500 ASN A 450 28.18 46.65 REMARK 500 ARG A 470 32.65 -89.37 REMARK 500 THR A 485 115.63 -11.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 388 0.11 SIDE CHAIN REMARK 500 ARG A 444 0.07 SIDE CHAIN REMARK 500 ARG A 449 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 602 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 274 O REMARK 620 2 MET A 278 O 75.5 REMARK 620 3 ASN A 280 O 109.2 62.0 REMARK 620 4 GLY A 282 O 103.7 121.8 64.1 REMARK 620 N 1 2 3 DBREF 9MX2 A 1 590 UNP P34947 GRK5_HUMAN 1 590 SEQADV 9MX2 ACE A 0 UNP P34947 ACETYLATION SEQADV 9MX2 ASN A 311 UNP P34947 ASP 311 ENGINEERED MUTATION SEQADV 9MX2 VAL A 591 UNP P34947 EXPRESSION TAG SEQADV 9MX2 ASP A 592 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 593 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 594 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 595 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 596 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 597 UNP P34947 EXPRESSION TAG SEQADV 9MX2 HIS A 598 UNP P34947 EXPRESSION TAG SEQRES 1 A 599 ACE MET GLU LEU GLU ASN ILE VAL ALA ASN THR VAL LEU SEQRES 2 A 599 LEU LYS ALA ARG GLU GLY GLY GLY GLY LYS ARG LYS GLY SEQRES 3 A 599 LYS SER LYS LYS TRP LYS GLU ILE LEU LYS PHE PRO HIS SEQRES 4 A 599 ILE SER GLN CYS GLU ASP LEU ARG ARG THR ILE ASP ARG SEQRES 5 A 599 ASP TYR CYS SER LEU CYS ASP LYS GLN PRO ILE GLY ARG SEQRES 6 A 599 LEU LEU PHE ARG GLN PHE CYS GLU THR ARG PRO GLY LEU SEQRES 7 A 599 GLU CYS TYR ILE GLN PHE LEU ASP SER VAL ALA GLU TYR SEQRES 8 A 599 GLU VAL THR PRO ASP GLU LYS LEU GLY GLU LYS GLY LYS SEQRES 9 A 599 GLU ILE MET THR LYS TYR LEU THR PRO LYS SER PRO VAL SEQRES 10 A 599 PHE ILE ALA GLN VAL GLY GLN ASP LEU VAL SER GLN THR SEQRES 11 A 599 GLU GLU LYS LEU LEU GLN LYS PRO CYS LYS GLU LEU PHE SEQRES 12 A 599 SER ALA CYS ALA GLN SER VAL HIS GLU TYR LEU ARG GLY SEQRES 13 A 599 GLU PRO PHE HIS GLU TYR LEU ASP SER MET PHE PHE ASP SEQRES 14 A 599 ARG PHE LEU GLN TRP LYS TRP LEU GLU ARG GLN PRO VAL SEQRES 15 A 599 THR LYS ASN THR PHE ARG GLN TYR ARG VAL LEU GLY LYS SEQRES 16 A 599 GLY GLY PHE GLY GLU VAL CYS ALA CYS GLN VAL ARG ALA SEQRES 17 A 599 THR GLY LYS MET TYR ALA CYS LYS ARG LEU GLU LYS LYS SEQRES 18 A 599 ARG ILE LYS LYS ARG LYS GLY GLU SER MET ALA LEU ASN SEQRES 19 A 599 GLU LYS GLN ILE LEU GLU LYS VAL ASN SER GLN PHE VAL SEQRES 20 A 599 VAL ASN LEU ALA TYR ALA TYR GLU THR LYS ASP ALA LEU SEQRES 21 A 599 CYS LEU VAL LEU THR ILE MET ASN GLY GLY ASP LEU LYS SEQRES 22 A 599 PHE HIS ILE TYR ASN MET GLY ASN PRO GLY PHE GLU GLU SEQRES 23 A 599 GLU ARG ALA LEU PHE TYR ALA ALA GLU ILE LEU CYS GLY SEQRES 24 A 599 LEU GLU ASP LEU HIS ARG GLU ASN THR VAL TYR ARG ASN SEQRES 25 A 599 LEU LYS PRO GLU ASN ILE LEU LEU ASP ASP TYR GLY HIS SEQRES 26 A 599 ILE ARG ILE SER ASP LEU GLY LEU ALA VAL LYS ILE PRO SEQRES 27 A 599 GLU GLY ASP LEU ILE ARG GLY ARG VAL GLY THR VAL GLY SEQRES 28 A 599 TYR MET ALA PRO GLU VAL LEU ASN ASN GLN ARG TYR GLY SEQRES 29 A 599 LEU SER PRO ASP TYR TRP GLY LEU GLY CYS LEU ILE TYR SEQRES 30 A 599 GLU MET ILE GLU GLY GLN SER PRO PHE ARG GLY ARG LYS SEQRES 31 A 599 GLU LYS VAL LYS ARG GLU GLU VAL ASP ARG ARG VAL LEU SEQRES 32 A 599 GLU THR GLU GLU VAL TYR SER HIS LYS PHE SER GLU GLU SEQRES 33 A 599 ALA LYS SER ILE CYS LYS MET LEU LEU THR LYS ASP ALA SEQRES 34 A 599 LYS GLN ARG LEU GLY CYS GLN GLU GLU GLY ALA ALA GLU SEQRES 35 A 599 VAL LYS ARG HIS PRO PHE PHE ARG ASN MET ASN PHE LYS SEQRES 36 A 599 ARG LEU GLU ALA GLY MET LEU ASP PRO PRO PHE VAL PRO SEQRES 37 A 599 ASP PRO ARG ALA VAL TYR CYS LYS ASP VAL LEU ASP ILE SEQRES 38 A 599 GLU GLN PHE SER THR VAL LYS GLY VAL ASN LEU ASP HIS SEQRES 39 A 599 THR ASP ASP ASP PHE TYR SER LYS PHE SER THR GLY SER SEQRES 40 A 599 VAL SER ILE PRO TRP GLN ASN GLU MET ILE GLU THR GLU SEQRES 41 A 599 CYS PHE LYS GLU LEU ASN VAL PHE GLY PRO ASN GLY THR SEQRES 42 A 599 LEU PRO PRO ASP LEU ASN ARG ASN HIS PRO PRO GLU PRO SEQRES 43 A 599 PRO LYS LYS GLY LEU LEU GLN ARG LEU PHE LYS ARG GLN SEQRES 44 A 599 HIS GLN ASN ASN SER LYS SER SER PRO SER SER LYS THR SEQRES 45 A 599 SER PHE ASN HIS HIS ILE ASN SER ASN HIS VAL SER SER SEQRES 46 A 599 ASN SER THR GLY SER SER VAL ASP HIS HIS HIS HIS HIS SEQRES 47 A 599 HIS HET ACE A 0 6 HET SGV A 601 37 HET K A 602 1 HETNAM ACE ACETYL GROUP HETNAM SGV SANGIVAMYCIN HETNAM K POTASSIUM ION HETSYN SGV 4-AMINO-7-BETA-D-RIBOFURANOSYL-7H-PYRROLO[2,3- HETSYN 2 SGV D]PYRIMIDINE-5-CARBOXAMIDE FORMUL 1 ACE C2 H4 O FORMUL 2 SGV C12 H15 N5 O5 FORMUL 3 K K 1+ HELIX 1 AA1 GLU A 2 GLU A 17 1 16 HELIX 2 AA2 LYS A 22 LYS A 26 5 5 HELIX 3 AA3 LYS A 29 LEU A 34 1 6 HELIX 4 AA4 HIS A 38 GLN A 41 5 4 HELIX 5 AA5 CYS A 42 ILE A 49 1 8 HELIX 6 AA6 ASP A 52 ASP A 58 1 7 HELIX 7 AA7 GLN A 60 GLU A 72 1 13 HELIX 8 AA8 ARG A 74 GLU A 91 1 18 HELIX 9 AA9 LYS A 97 LEU A 110 1 14 HELIX 10 AB1 GLY A 122 LYS A 136 1 15 HELIX 11 AB2 PHE A 142 ARG A 154 1 13 HELIX 12 AB3 GLY A 155 SER A 164 1 10 HELIX 13 AB4 SER A 164 GLN A 179 1 16 HELIX 14 AB5 THR A 182 ASN A 184 5 3 HELIX 15 AB6 LYS A 219 LYS A 226 1 8 HELIX 16 AB7 GLY A 227 VAL A 241 1 15 HELIX 17 AB8 ASP A 270 ASN A 277 1 8 HELIX 18 AB9 GLU A 284 GLU A 305 1 22 HELIX 19 AC1 LYS A 313 GLU A 315 5 3 HELIX 20 AC2 ASP A 329 ALA A 333 5 5 HELIX 21 AC3 ALA A 353 ASN A 358 1 6 HELIX 22 AC4 LEU A 364 GLY A 381 1 18 HELIX 23 AC5 LYS A 393 GLU A 403 1 11 HELIX 24 AC6 SER A 413 LEU A 424 1 12 HELIX 25 AC7 ASP A 427 ARG A 431 5 5 HELIX 26 AC8 GLY A 438 HIS A 445 1 8 HELIX 27 AC9 PRO A 446 ARG A 449 5 4 HELIX 28 AD1 ASN A 452 GLY A 459 1 8 HELIX 29 AD2 ASP A 476 ILE A 480 5 5 HELIX 30 AD3 ASP A 492 THR A 494 5 3 HELIX 31 AD4 ASP A 495 SER A 503 1 9 HELIX 32 AD5 VAL A 507 THR A 518 1 12 HELIX 33 AD6 GLU A 519 ASN A 525 1 7 HELIX 34 AD7 GLY A 528 THR A 532 5 5 HELIX 35 AD8 PRO A 534 ASN A 538 5 5 SHEET 1 AA1 6 PHE A 186 GLY A 195 0 SHEET 2 AA1 6 GLY A 198 VAL A 205 -1 O VAL A 200 N LEU A 192 SHEET 3 AA1 6 MET A 211 GLU A 218 -1 O ARG A 216 N GLU A 199 SHEET 4 AA1 6 ALA A 258 LEU A 263 -1 O LEU A 263 N ALA A 213 SHEET 5 AA1 6 LEU A 249 GLU A 254 -1 N TYR A 253 O CYS A 260 SHEET 6 AA1 6 GLY A 505 SER A 506 -1 O GLY A 505 N ALA A 252 SHEET 1 AA2 2 ILE A 317 LEU A 319 0 SHEET 2 AA2 2 ILE A 325 ILE A 327 -1 O ARG A 326 N LEU A 318 SSBOND 1 CYS A 201 CYS A 214 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 214 1555 1555 2.07 LINK C ACE A 0 N MET A 1 1555 1555 1.35 LINK O HIS A 274 K K A 602 1555 1555 3.18 LINK O MET A 278 K K A 602 1555 1555 3.39 LINK O ASN A 280 K K A 602 1555 1555 2.86 LINK O GLY A 282 K K A 602 1555 1555 2.68 CRYST1 140.309 140.309 78.005 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012820 0.00000 CONECT 1 2 3 7 CONECT 2 1 CONECT 3 1 4 5 6 CONECT 4 3 CONECT 5 3 CONECT 6 3 CONECT 7 1 CONECT 3270 3460 CONECT 3291 3460 CONECT 3460 3270 3291 CONECT 4461 8781 CONECT 4532 8781 CONECT 4556 8781 CONECT 4584 8781 CONECT 8744 8745 8749 CONECT 8745 8744 8746 8766 CONECT 8746 8745 8747 CONECT 8747 8746 8748 8753 CONECT 8748 8747 8749 8751 CONECT 8749 8744 8748 8750 CONECT 8750 8749 8767 8768 CONECT 8751 8748 8752 8755 CONECT 8752 8751 8753 8769 CONECT 8753 8747 8752 8754 CONECT 8754 8753 8758 8763 8770 CONECT 8755 8751 8756 8757 CONECT 8756 8755 8771 8772 CONECT 8757 8755 CONECT 8758 8754 8759 8760 8773 CONECT 8759 8758 8774 CONECT 8760 8758 8761 8762 8775 CONECT 8761 8760 8776 CONECT 8762 8760 8763 8764 8777 CONECT 8763 8754 8762 CONECT 8764 8762 8765 8778 8779 CONECT 8765 8764 8780 CONECT 8766 8745 CONECT 8767 8750 CONECT 8768 8750 CONECT 8769 8752 CONECT 8770 8754 CONECT 8771 8756 CONECT 8772 8756 CONECT 8773 8758 CONECT 8774 8759 CONECT 8775 8760 CONECT 8776 8761 CONECT 8777 8762 CONECT 8778 8764 CONECT 8779 8764 CONECT 8780 8765 CONECT 8781 4461 4532 4556 4584 MASTER 411 0 3 35 8 0 0 6 4398 1 52 47 END